Rorug02G0465400

Clathrin coat assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014561
Physical Location & Seq
Forward (+)
59660451 .. 59662491
2041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0465400.1

Sequence Viewer

Length: 1512 bp
ATGTGTAGCGCACATTCATACACACAAGATAAGATGAGTTCCAAGGAAGTAGCTAAAAGGCCTCATGCAGTATGCGTTCCACTGCCGTTTCAAAGCCATATCAAGGCAATGCTCAAACTAGCAAAACTCCTCCACCACAGAGGTCTTCATATAACCTTTGTCAACACAGTGTTCAACCACAAACGCTTTCTTCAATCTCTAGGACCTAACTCCCTTGATGGCTTGCCTGATTTTCGGTTCGAAACCATTCCAGATGGCCTTCCAAGTTCAGATGAAGATGTGACGCAAGACGTCCATTTGCTTTGTGGTGCTGTCAGGAAAAATTTGTTAGCTCCATTTCAAGACCTCCTCATGAAACTCAATGAAGCTGCAATTACTTCCCACAGTACTAATCCTCCAGTGACTCGGATAGTAGCAGACGGTTGGAATTCCTTTGTCTTCACAGCAGCAGAAACAAATCGAATCCCTGTTACACTCTTCTTTACTGTTGCTGCAAGCAGCTTCATGGGATTTGCACAATATCCCACTTTGATGGAAAAAGGATTAGCACCACTCAAAGACGAGAGCTGTTTCACAAACGGGTATTTGGACAAGGTCATAGATTGGATTCCAGGACTGAAAGATATCCGGTTAAGGGATCTCCCGACCAACTTTCAAGTCACAAATCCTGATGACGCCATTTGGAACCTCTGCTTGGAAGCAATTGAAGGAGTTCATAAAGCTGAAGCTGTTGTTCTTCATACTTTTGATGCATTGGAGCATCATGTTTTGGAATCTCTCTCGTCGATGCTTCATCCACATGTTTCTGCCATTGGCCCTCTCCAATTACTCATTAATCAGATACCAGAACACCCTTTGAACCCTATGGGTTACAGTCTATGGAAAGAAGAAACCGAGTGCCTCCAATGGCTCAACTCCAAGGCGCCAAGTACGGTTGTTTATGTGAACTTTGGCAGTATAACGATCACGACATTGAACAATCTTGTAGAGTTTGCTTGGGGACTTGCAAATACCAAGCTTCCATTCTTTTGGGTAATTAGACCTGATTTAGTTGCTGGTGAATCGGCTATTTTGCCACCAGAGTTTGTGGCTGAAACCAAACAAAGAGGTCTAATAGCAAGTTGGTGCCCACAAGAGCTAGTGCTTAACCACCCAGCAGTTGGAGGGTTTTTAACACACAGCGGGTGGAATTCAATGATTGAGAGTGTGACCGCAGGAGTGCCGATGCTGTGCTGGCCAGTCTTTGGGGACCAACAAACAAATACCTGGTCTGCTTGCAATGAATGGGGAATTGGCATTGAGATCGCCGGTAAGGAAGTGAAGAGAGACGAAATAGAGAAGCTTGTTAAACAGATGATGGAGGGCGAGAAGGGTAAACATATGAGAAATAAAGTGATGGAATGGAAGCTACTTGCAGAAGAATCAACCACTCCACATGGTTCTTCATCCACAAACTTGGATAAATTGTTTCATGTTGTTCTAAATGTTCCTTCCCATATAGGGCATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

503

Amino Acids

56.07

Weight (kDa)

5.95

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 299 - 459 2.3e-24 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014561)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05020
fragaria_vesca FvH4_6g42130 FvH4_6g42160 FvH4_6g42170
malus_domestica MD09G1114300.v1.1 MD17G1106000.v1.1
prunus_persica Prupe.3G210200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0158041
rosa_laevigata RLG00000021052
rosa_multiflora Rmu_sc0000419.1_g000017
rosa_roxburghii Rroxscaffold_2G00091720
rosa_rugosa Rorug02G0465400
rosa_samantha Rh2AG531400 Rh2BG545900 Rh2CG515700 Rh2DG554000
rosa_wichuraiana Rw2G043950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 294
AccB1I GGYRCC 2 cut(s) 922, 1125
AccB7I CCANNNNNTGG 2 cut(s) 1160, 1244
AciI CCGC 2 cut(s) 1182, 1212
AclWI GGATC 1 cut(s) 645
AcoI YGGCCR 1 cut(s) 1235
AcsI RAATTY 3 cut(s) 322, 427, 1189
AcuI CTGAAG 1 cut(s) 744
AcyI GRCGYC 3 cut(s) 291, 675, 923
AfaI GTAC 2 cut(s) 388, 931
AfiI CCNNNNNNNGG 6 cut(s) 103, 634, 694, 1160, 1244, 1500
AflIII ACRYGT 1 cut(s) 799
AgsI TTSAA 9 cut(s) 92, 175, 194, 341, 656, 707, 859, 976, 1194
AjnI CCWGG 2 cut(s) 610, 1265
AjuI GAANNNNNNNTTGG 6 cut(s) 677, 709, 1007, 1039, 1275, 1307
Alw26I GTCTC 1 cut(s) 1320
AlwI GGATC 1 cut(s) 645
AoxI GGCC 4 cut(s) 59, 256, 814, 1235
ApeKI GCWGC 4 cut(s) 368, 446, 491, 498
ApoI RAATTY 3 cut(s) 322, 427, 1189
ArsI GACNNNNNNTTYG 2 cut(s) 1253, 1285
AseI ATTAAT 1 cut(s) 834
Asp700I GAANNNNTTC 2 cut(s) 246, 711
AspLEI GCGC 2 cut(s) 11, 925
AspS9I GGNCC 3 cut(s) 203, 815, 1249
AsuHPI GGTGA 1 cut(s) 1070
AsuII TTCGAA 1 cut(s) 240
AvaII GGWCC 2 cut(s) 203, 1249
BaeGI GKGCMC 1 cut(s) 1130
BalI TGGCCA 1 cut(s) 1237
BanI GGYRCC 2 cut(s) 922, 1125
BbsI GAAGAC 2 cut(s) 137, 430
BbvI GCAGC 4 cut(s) 355, 458, 478, 510
BccI CCATC 5 cut(s) 212, 248, 526, 1351, 1390
BceAI ACGGC 1 cut(s) 70
BcgI CGANNNNNNTGC 2 cut(s) 1285, 1319
BciT130I CCWGG 2 cut(s) 612, 1267
BcoDI GTCTC 1 cut(s) 1320
BfaI CTAG 3 cut(s) 119, 200, 1139
BfoI RGCGCY 1 cut(s) 926
BisI GCNGC 4 cut(s) 369, 447, 492, 499
BlsI GCNGC 4 cut(s) 370, 448, 493, 500
BmcAI AGTACT 1 cut(s) 388
Bme1390I CCNGG 2 cut(s) 612, 1267
Bme18I GGWCC 2 cut(s) 203, 1249
BmgT120I GGNCC 3 cut(s) 203, 815, 1249
BmiI GGNNCC 4 cut(s) 686, 924, 1127, 1250
BmrFI CCNGG 2 cut(s) 612, 1267
BmsI GCATC 4 cut(s) 739, 769, 777, 1215
BpiI GAAGAC 2 cut(s) 137, 430
BpmI CTGGAG 1 cut(s) 381
Bpu14I TTCGAA 1 cut(s) 240
BsaHI GRCGYC 3 cut(s) 291, 675, 923
BsaJI CCNNGG 2 cut(s) 42, 918
BsaWI WCCGGW 1 cut(s) 627
BsaXI ACNNNNNCTCC 2 cut(s) 379, 409
Bsc4I CCNNNNNNNGG 6 cut(s) 103, 634, 694, 1160, 1244, 1500
Bse118I RCCGGY 1 cut(s) 1307
Bse1I ACTGG 2 cut(s) 398, 1238
Bse3DI GCAATG 2 cut(s) 114, 1285
BseBI CCWGG 2 cut(s) 612, 1267
BseDI CCNNGG 2 cut(s) 42, 918
BseGI GGATG 2 cut(s) 793, 1445
BseLI CCNNNNNNNGG 6 cut(s) 103, 634, 694, 1160, 1244, 1500
BseMI GCAATG 2 cut(s) 114, 1285
BseNI ACTGG 2 cut(s) 398, 1238
BseRI GAGGAG 2 cut(s) 119, 338
BseSI GKGCMC 1 cut(s) 1130
BseXI GCAGC 4 cut(s) 355, 458, 478, 510
BseYI CCCAGC 1 cut(s) 1153
BshFI GGCC 4 cut(s) 61, 258, 816, 1237
BshNI GGYRCC 2 cut(s) 922, 1125
BsiSI CCGG 2 cut(s) 628, 1308
BslFI GGGAC 2 cut(s) 1014, 1262
BslI CCNNNNNNNGG 6 cut(s) 103, 634, 694, 1160, 1244, 1500
BsmAI GTCTC 1 cut(s) 1320
BsmBI CGTCTC 1 cut(s) 1320
BsmFI GGGAC 2 cut(s) 1014, 1262
BsnI GGCC 4 cut(s) 61, 258, 816, 1237
Bsp119I TTCGAA 1 cut(s) 240
Bsp1286I GDGCHC 1 cut(s) 1130
Bsp143I GATC 3 cut(s) 637, 963, 1302
BspACI CCGC 2 cut(s) 1182, 1212
BspANI GGCC 4 cut(s) 61, 258, 816, 1237
BspHI TCATGA 1 cut(s) 351
BspLI GGNNCC 4 cut(s) 686, 924, 1127, 1250
BspPI GGATC 1 cut(s) 645
BspT104I TTCGAA 1 cut(s) 240
BspT107I GGYRCC 2 cut(s) 922, 1125
BsrDI GCAATG 2 cut(s) 114, 1285
BsrFI RCCGGY 1 cut(s) 1307
BsrI ACTGG 2 cut(s) 398, 1238
BssAI RCCGGY 1 cut(s) 1307
BssECI CCNNGG 2 cut(s) 42, 918
BssMI GATC 3 cut(s) 637, 963, 1302
BssNI GRCGYC 3 cut(s) 291, 675, 923
BssT1I CCWWGG 2 cut(s) 42, 918
Bst2UI CCWGG 2 cut(s) 612, 1267
Bst4CI ACNGT 6 cut(s) 169, 386, 422, 487, 875, 934
Bst6I CTCTTC 2 cut(s) 482, 1316
BstACI GRCGYC 3 cut(s) 291, 675, 923
BstBI TTCGAA 1 cut(s) 240
BstC8I GCNNGC 4 cut(s) 224, 496, 1235, 1276
BstF5I GGATG 2 cut(s) 793, 1445
BstH2I RGCGCY 1 cut(s) 926
BstHHI GCGC 2 cut(s) 11, 925
BstKTI GATC 3 cut(s) 640, 966, 1305
BstMAI GTCTC 1 cut(s) 1320
BstMBI GATC 3 cut(s) 637, 963, 1302
BstMWI GCNNNNNNNGC 1 cut(s) 1234
BstNI CCWGG 2 cut(s) 612, 1267
BstNSI RCATGY 1 cut(s) 803
BstSCI CCNGG 2 cut(s) 610, 1265
BstSLI GKGCMC 1 cut(s) 1130
BstV1I GCAGC 4 cut(s) 355, 458, 478, 510
BstV2I GAAGAC 2 cut(s) 137, 430
BstX2I RGATCY 1 cut(s) 637
BstXI CCANNNNNNTGG 3 cut(s) 532, 1029, 1456
BstYI RGATCY 1 cut(s) 637
BsuRI GGCC 4 cut(s) 61, 258, 816, 1237
BtsCI GGATG 2 cut(s) 793, 1445
BtsI GCAGTG 1 cut(s) 80
BtsIMutI CAGTG 3 cut(s) 80, 174, 405
Cac8I GCNNGC 4 cut(s) 224, 496, 1235, 1276
CciI TCATGA 1 cut(s) 351
CfoI GCGC 2 cut(s) 11, 925
Cfr10I RCCGGY 1 cut(s) 1307
Cfr13I GGNCC 3 cut(s) 203, 815, 1249
CseI GACGC 2 cut(s) 292, 683
CsiI ACCWGGT 1 cut(s) 1265
Csp6I GTAC 2 cut(s) 387, 930
CviAII CATG 7 cut(s) 65, 352, 505, 764, 800, 1436, 1472
CviQI GTAC 2 cut(s) 387, 930
DinI GGCGCC 1 cut(s) 924
DpnI GATC 3 cut(s) 639, 965, 1304
DpnII GATC 3 cut(s) 637, 963, 1302
EaeI YGGCCR 1 cut(s) 1235
Eam1104I CTCTTC 2 cut(s) 482, 1316
EarI CTCTTC 2 cut(s) 482, 1316
Eco130I CCWWGG 2 cut(s) 42, 918
Eco147I AGGCCT 1 cut(s) 61
Eco32I GATATC 1 cut(s) 625
Eco47I GGWCC 2 cut(s) 203, 1249
Eco57I CTGAAG 1 cut(s) 744
EcoO109I RGGNCCY 1 cut(s) 203
EcoRI GAATTC 2 cut(s) 427, 1189
EcoRII CCWGG 2 cut(s) 610, 1265
EcoRV GATATC 1 cut(s) 625
EcoT14I CCWWGG 2 cut(s) 42, 918
EcoT22I ATGCAT 1 cut(s) 754
EgeI GGCGCC 1 cut(s) 924
EheI GGCGCC 1 cut(s) 924
ErhI CCWWGG 2 cut(s) 42, 918
Esp3I CGTCTC 1 cut(s) 1320
FaeI CATG 7 cut(s) 68, 355, 508, 767, 803, 1439, 1475
FaqI GGGAC 2 cut(s) 1014, 1262
FatI CATG 7 cut(s) 64, 351, 504, 763, 799, 1435, 1471
FauI CCCGC 1 cut(s) 1175
FauNDI CATATG 1 cut(s) 1380
Fnu4HI GCNGC 4 cut(s) 369, 447, 492, 499
FokI GGATG 2 cut(s) 780, 1432
Fsp4HI GCNGC 4 cut(s) 369, 447, 492, 499
FspBI CTAG 3 cut(s) 119, 200, 1139
GlaI GCGC 2 cut(s) 10, 924
GluI GCNGC 4 cut(s) 369, 447, 492, 499
GsaI CCCAGC 1 cut(s) 1157
GsuI CTGGAG 1 cut(s) 381
HaeII RGCGCY 1 cut(s) 926
HaeIII GGCC 4 cut(s) 61, 258, 816, 1237
HapII CCGG 2 cut(s) 628, 1308
HgaI GACGC 2 cut(s) 292, 683
HhaI GCGC 2 cut(s) 11, 925
Hin1I GRCGYC 3 cut(s) 291, 675, 923
Hin1II CATG 7 cut(s) 68, 355, 508, 767, 803, 1439, 1475
Hin6I GCGC 2 cut(s) 9, 923
HinP1I GCGC 2 cut(s) 9, 923
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HindIII AAGCTT 2 cut(s) 1016, 1340
HinfI GANTC 6 cut(s) 403, 462, 607, 773, 1061, 1421
HpaII CCGG 2 cut(s) 628, 1308
HphI GGTGA 1 cut(s) 1070
Hpy166II GTNNAC 3 cut(s) 163, 946, 1376
Hpy188I TCNGA 3 cut(s) 271, 408, 840
Hpy188III TCNNGA 7 cut(s) 251, 316, 341, 352, 643, 668, 967
Hpy8I GTNNAC 3 cut(s) 163, 946, 1376
Hpy99I CGWCG 1 cut(s) 787
HpyAV CCTTC 4 cut(s) 269, 701, 1363, 1500
HpyCH4III ACNGT 6 cut(s) 169, 386, 422, 487, 875, 934
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 8 cut(s) 68, 371, 494, 515, 752, 1007, 1278, 1415
HpyF10VI GCNNNNNNNGC 1 cut(s) 1234
HpySE526I ACGT 1 cut(s) 291
Hsp92I GRCGYC 3 cut(s) 291, 675, 923
Hsp92II CATG 7 cut(s) 68, 355, 508, 767, 803, 1439, 1475
HspAI GCGC 2 cut(s) 9, 923
KasI GGCGCC 1 cut(s) 922
Kzo9I GATC 3 cut(s) 637, 963, 1302
LmnI GCTCC 2 cut(s) 337, 757
Lsp1109I GCAGC 4 cut(s) 355, 458, 478, 510
LweI GCATC 4 cut(s) 739, 769, 777, 1215
MabI ACCWGGT 1 cut(s) 1265
MaeI CTAG 3 cut(s) 119, 200, 1139
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 6 cut(s) 280, 400, 469, 658, 869, 1207
MalI GATC 3 cut(s) 639, 965, 1304
MboI GATC 3 cut(s) 637, 963, 1302
MfeI CAATTG 1 cut(s) 702
MflI RGATCY 1 cut(s) 637
MhlI GDGCHC 1 cut(s) 1130
MlsI TGGCCA 1 cut(s) 1237
MluCI AATT 9 cut(s) 322, 372, 427, 702, 824, 1035, 1189, 1290, 1463
MluNI TGGCCA 1 cut(s) 1237
Mly113I GGCGCC 1 cut(s) 923
MlyI GAGTC 1 cut(s) 397
MmeI TCCRAC 2 cut(s) 404, 1141
Mox20I TGGCCA 1 cut(s) 1237
Mph1103I ATGCAT 1 cut(s) 754
MroXI GAANNNNTTC 2 cut(s) 246, 711
MscI TGGCCA 1 cut(s) 1237
MseI TTAA 5 cut(s) 632, 834, 1146, 1172, 1347
MslI CAYNNNNRTG 2 cut(s) 530, 798
Msp20I TGGCCA 1 cut(s) 1237
MspA1I CMGCKG 1 cut(s) 1182
MspI CCGG 2 cut(s) 628, 1308
MspR9I CCNGG 2 cut(s) 612, 1267
MunI CAATTG 1 cut(s) 702
MvaI CCWGG 2 cut(s) 612, 1267
MwoI GCNNNNNNNGC 1 cut(s) 1234
NarI GGCGCC 1 cut(s) 923
NdeI CATATG 1 cut(s) 1380
NdeII GATC 3 cut(s) 637, 963, 1302
NlaIII CATG 7 cut(s) 68, 355, 508, 767, 803, 1439, 1475
NlaIV GGNNCC 4 cut(s) 686, 924, 1127, 1250
NmuCI GTSAC 4 cut(s) 280, 400, 658, 1207
NsiI ATGCAT 1 cut(s) 754
NspI RCATGY 1 cut(s) 803
NspV TTCGAA 1 cut(s) 240
PagI TCATGA 1 cut(s) 351
PceI AGGCCT 1 cut(s) 61
PciI ACATGT 1 cut(s) 799
PdmI GAANNNNTTC 2 cut(s) 246, 711
PfeI GAWTC 5 cut(s) 462, 607, 773, 1061, 1421
PflFI GACNNNGTC 1 cut(s) 593
PflMI CCANNNNNTGG 2 cut(s) 1160, 1244
PfoI TCCNGGA 1 cut(s) 610
PkrI GCNGC 4 cut(s) 370, 448, 493, 500
PleI GAGTC 1 cut(s) 397
PluTI GGCGCC 1 cut(s) 926
PpsI GAGTC 1 cut(s) 397
PpuMI RGGWCCY 1 cut(s) 203
PscI ACATGT 1 cut(s) 799
PshBI ATTAAT 1 cut(s) 834
Psp5II RGGWCCY 1 cut(s) 203
Psp6I CCWGG 2 cut(s) 610, 1265
PspFI CCCAGC 1 cut(s) 1153
PspGI CCWGG 2 cut(s) 610, 1265
PspN4I GGNNCC 4 cut(s) 686, 924, 1127, 1250
PspPI GGNCC 3 cut(s) 203, 815, 1249
PspPPI RGGWCCY 1 cut(s) 203
PsuI RGATCY 1 cut(s) 637
PsyI GACNNNGTC 1 cut(s) 593
RsaI GTAC 2 cut(s) 388, 931
RsaNI GTAC 2 cut(s) 387, 930
RseI CAYNNNNRTG 2 cut(s) 530, 798
SaqAI TTAA 5 cut(s) 632, 834, 1146, 1172, 1347
SatI GCNGC 4 cut(s) 369, 447, 492, 499
Sau3AI GATC 3 cut(s) 637, 963, 1302
Sau96I GGNCC 3 cut(s) 203, 815, 1249
ScaI AGTACT 1 cut(s) 388
SchI GAGTC 1 cut(s) 397
ScrFI CCNGG 2 cut(s) 612, 1267
SduI GDGCHC 1 cut(s) 1130
SexAI ACCWGGT 1 cut(s) 1265
SfaNI GCATC 4 cut(s) 739, 769, 777, 1215
SfoI GGCGCC 1 cut(s) 924
SfuI TTCGAA 1 cut(s) 240
SinI GGWCC 2 cut(s) 203, 1249
SmiMI CAYNNNNRTG 2 cut(s) 530, 798
Sse9I AATT 9 cut(s) 322, 372, 427, 702, 824, 1035, 1189, 1290, 1463
SseBI AGGCCT 1 cut(s) 61
SsiI CCGC 2 cut(s) 1182, 1212
SspDI GGCGCC 1 cut(s) 922
SspMI CTAG 3 cut(s) 119, 200, 1139
StuI AGGCCT 1 cut(s) 61
StyD4I CCNGG 2 cut(s) 610, 1265
StyI CCWWGG 2 cut(s) 42, 918
TaaI ACNGT 6 cut(s) 169, 386, 422, 487, 875, 934
TaiI ACGT 1 cut(s) 294
TaqI TCGA 3 cut(s) 240, 460, 785
TasI AATT 9 cut(s) 322, 372, 427, 702, 824, 1035, 1189, 1290, 1463
TatI WGTACW 1 cut(s) 386
TfiI GAWTC 5 cut(s) 462, 607, 773, 1061, 1421
Tru1I TTAA 5 cut(s) 632, 834, 1146, 1172, 1347
Tru9I TTAA 5 cut(s) 632, 834, 1146, 1172, 1347
TscAI CASTG 3 cut(s) 87, 174, 405
TseFI GTSAC 4 cut(s) 280, 400, 658, 1207
TseI GCWGC 4 cut(s) 368, 446, 491, 498
Tsp45I GTSAC 4 cut(s) 280, 400, 658, 1207
TspRI CASTG 3 cut(s) 87, 174, 405
Tth111I GACNNNGTC 1 cut(s) 593
Van91I CCANNNNNTGG 2 cut(s) 1160, 1244
VpaK11BI GGWCC 2 cut(s) 203, 1249
VspI ATTAAT 1 cut(s) 834
XapI RAATTY 3 cut(s) 322, 427, 1189
XceI RCATGY 1 cut(s) 803
XcmI CCANNNNNNNNNTGG 2 cut(s) 302, 1157
XmnI GAANNNNTTC 2 cut(s) 246, 711
XspI CTAG 3 cut(s) 119, 200, 1139
ZraI GACGTC 1 cut(s) 292
ZrmI AGTACT 1 cut(s) 388
Zsp2I ATGCAT 1 cut(s) 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.