FvH4_6g42160

Clathrin coat assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014561
Physical Location & Seq
Reverse (-)
32969675 .. 32970967
1293 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g42160.t1

Sequence Viewer

Length: 1062 bp
ATGTTACTAGACCGCATACAATTCTGGCAGAAACTGCTGGATCGAGCCATTGCCACAATTCCCACCGGTGCTGCCAAAACGAACCGTTTAATCCTCATTTCCCTCCACGCAATCGTCCAAGAGACGTACGATCTATACAGAGACATTTCCGACGGGCTGGCGCTGCTTTTAGATAGCTTTTTTCATCTCCAATACCAATCATGCCTAAGTGCTTTTCATGCATGCGTAAAAGCCTCGAAGCAATTCGAAGAGCTTTCTAGCTTTTACGAAACATGCAAGGCGTTAGGGGTTGGGAGGACCTCTGAGTATCCAAGCGTGCAGAAAATCTCTGAGGAGCTGATCGAGACGTTGCAGGAGTTTGTGAAAGACCAAGCTTCGTTTCCAGGTCGATCCCCGCCATGCCATTTGAATCAGAATCGTAAAGATAAAGGGACGGCGACCAGCCTTGAACAACAATTTGAGTTTGCTGATTCGGAGCCGCACGAGAGTACTGCATCGGATTTTGGTTCAGCTTGTACGTCGTTATCAGATTTAGCGAGTGTTGGCGGCATAGAAAATGGGGCTAGCCCATCAAGGTCGGCCGAGCAAGATTTCTTAACCTCCGATGAGCAATTGTCCGAGAAGACTCTATCTCCGTTACAGTCACCGTTACCGGAGTTCATGGTTGGTAGTAATGAAACTAATGATAAAGCACCGAGCCAAACTTCGTCGCCGGTTGATCTTTTGGACTTGTTTCAACCGCAACAAACAGATCATGTTCAACAAGCTAATCAAGAAGGTGAAAAACCTCAATGGGAACTTGTTCTATTTGAGTCTGCAAATCAAAGTGGTGCAACTGAAACATCACCGATTACTTCTCCTCCTCCCAACCTGTTTTCTTCTCTTTCTCCTAACATGTCTCCTAATCTGTTGGAGCCATCGTCCAGCCCGGACTTGGATTATTTCTTTCAGAATTCTTCGACAAGCAATGCAGTACATATAAACAATCCATTTCTTCAAGACATTTTACAAGTTGAGGGCTTTGCAATTCCCGACTCGTTATTTCTAATGTTGGCCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

354

Amino Acids

38.83

Weight (kDa)

4.41

Isoelectric Point (pI)

65.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANTH PF07651 2 - 123 2.5e-33 ANTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014561)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05020
fragaria_vesca FvH4_6g42130 FvH4_6g42160 FvH4_6g42170
malus_domestica MD09G1114300.v1.1 MD17G1106000.v1.1
prunus_persica Prupe.3G210200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0158041
rosa_laevigata RLG00000021052
rosa_multiflora Rmu_sc0000419.1_g000017
rosa_roxburghii Rroxscaffold_2G00091720
rosa_rugosa Rorug02G0465400
rosa_samantha Rh2AG531400 Rh2BG545900 Rh2CG515700 Rh2DG554000
rosa_wichuraiana Rw2G043950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 13, 395, 479, 546, 740
AclWI GGATC 2 cut(s) 48, 384
AcoI YGGCCR 2 cut(s) 579, 1053
AcsI RAATTY 1 cut(s) 952
AfaI GTAC 4 cut(s) 128, 490, 517, 975
AfiI CCNNNNNNNGG 1 cut(s) 934
AflIII ACRYGT 1 cut(s) 894
AgeI ACCGGT 1 cut(s) 65
AgsI TTSAA 5 cut(s) 409, 449, 737, 761, 998
AjnI CCWGG 1 cut(s) 382
AjuI GAANNNNNNNTTGG 2 cut(s) 363, 395
AluBI AGCT 7 cut(s) 177, 253, 261, 337, 374, 512, 767
AluI AGCT 7 cut(s) 177, 253, 261, 337, 374, 512, 767
Alw26I GTCTC 4 cut(s) 116, 135, 338, 903
AlwI GGATC 2 cut(s) 48, 384
AlwNI CAGNNNCTG 1 cut(s) 34
AoxI GGCC 2 cut(s) 579, 1053
ApeKI GCWGC 2 cut(s) 71, 163
ApoI RAATTY 1 cut(s) 952
AsiGI ACCGGT 1 cut(s) 65
Asp700I GAANNNNTTC 2 cut(s) 242, 801
AspLEI GCGC 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 297
AsuC2I CCSGG 1 cut(s) 929
AsuHPI GGTGA 3 cut(s) 636, 791, 837
AsuII TTCGAA 1 cut(s) 246
AsuNHI GCTAGC 1 cut(s) 563
AvaII GGWCC 1 cut(s) 297
BalI TGGCCA 1 cut(s) 1055
BauI CACGAG 1 cut(s) 482
BbsI GAAGAC 1 cut(s) 629
BbvI GCAGC 2 cut(s) 58, 150
BccI CCATC 2 cut(s) 577, 925
BceAI ACGGC 1 cut(s) 450
BcgI CGANNNNNNTGC 2 cut(s) 473, 507
BciT130I CCWGG 1 cut(s) 384
BciVI GTATCC 1 cut(s) 318
BcnI CCSGG 1 cut(s) 929
BcoDI GTCTC 4 cut(s) 116, 135, 338, 903
BfaI CTAG 3 cut(s) 8, 258, 564
BfoI RGCGCY 1 cut(s) 164
BfuI GTATCC 1 cut(s) 318
BisI GCNGC 4 cut(s) 72, 164, 479, 547
BlsI GCNGC 4 cut(s) 73, 165, 480, 548
BmcAI AGTACT 1 cut(s) 490
Bme1390I CCNGG 2 cut(s) 384, 929
Bme18I GGWCC 1 cut(s) 297
BmgT120I GGNCC 1 cut(s) 297
BmiI GGNNCC 2 cut(s) 477, 915
BmrFI CCNGG 2 cut(s) 384, 929
BmsI GCATC 1 cut(s) 503
BmtI GCTAGC 1 cut(s) 567
BpiI GAAGAC 1 cut(s) 629
Bpu14I TTCGAA 1 cut(s) 246
BpuMI CCSGG 1 cut(s) 929
BsaWI WCCGGW 2 cut(s) 65, 652
BsaXI ACNNNNNCTCC 6 cut(s) 616, 646, 844, 874, 905, 935
Bsc4I CCNNNNNNNGG 1 cut(s) 934
Bse118I RCCGGY 2 cut(s) 65, 712
Bse1I ACTGG 1 cut(s) 1056
Bse3DI GCAATG 2 cut(s) 48, 973
BseBI CCWGG 1 cut(s) 384
BseLI CCNNNNNNNGG 1 cut(s) 934
BseMI GCAATG 2 cut(s) 48, 973
BseMII CTCAG 2 cut(s) 294, 321
BseNI ACTGG 1 cut(s) 1056
BseRI GAGGAG 3 cut(s) 347, 849, 852
BseX3I CGGCCG 1 cut(s) 579
BseXI GCAGC 2 cut(s) 58, 150
BsgI GTGCAG 1 cut(s) 338
Bsh1285I CGRYCG 1 cut(s) 582
BshFI GGCC 2 cut(s) 581, 1055
BshTI ACCGGT 1 cut(s) 65
BsiEI CGRYCG 1 cut(s) 582
BsiSI CCGG 4 cut(s) 66, 653, 713, 929
BsiWI CGTACG 1 cut(s) 126
BslFI GGGAC 1 cut(s) 445
BslI CCNNNNNNNGG 1 cut(s) 934
BsmAI GTCTC 4 cut(s) 116, 135, 338, 903
BsmBI CGTCTC 2 cut(s) 116, 338
BsmFI GGGAC 1 cut(s) 445
BsnI GGCC 2 cut(s) 581, 1055
Bsp119I TTCGAA 1 cut(s) 246
Bsp143I GATC 6 cut(s) 40, 130, 339, 389, 718, 751
BspACI CCGC 5 cut(s) 13, 395, 479, 546, 740
BspANI GGCC 2 cut(s) 581, 1055
BspCNI CTCAG 2 cut(s) 295, 322
BspLI GGNNCC 2 cut(s) 477, 915
BspOI GCTAGC 1 cut(s) 567
BspPI GGATC 2 cut(s) 48, 384
BspQI GCTCTTC 1 cut(s) 243
BspT104I TTCGAA 1 cut(s) 246
BsrDI GCAATG 2 cut(s) 48, 973
BsrFI RCCGGY 2 cut(s) 65, 712
BsrI ACTGG 1 cut(s) 1056
BssAI RCCGGY 2 cut(s) 65, 712
BssMI GATC 6 cut(s) 40, 130, 339, 389, 718, 751
BssSI CACGAG 1 cut(s) 482
Bst2BI CACGAG 1 cut(s) 482
Bst2UI CCWGG 1 cut(s) 384
Bst4CI ACNGT 3 cut(s) 86, 642, 648
Bst6I CTCTTC 1 cut(s) 243
BstAPI GCANNNNNTGC 1 cut(s) 34
BstBI TTCGAA 1 cut(s) 246
BstC8I GCNNGC 4 cut(s) 159, 223, 317, 565
BstDEI CTNAG 3 cut(s) 206, 303, 330
BstH2I RGCGCY 1 cut(s) 164
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 6 cut(s) 43, 133, 342, 392, 721, 754
BstMAI GTCTC 4 cut(s) 116, 135, 338, 903
BstMBI GATC 6 cut(s) 40, 130, 339, 389, 718, 751
BstMCI CGRYCG 1 cut(s) 582
BstMWI GCNNNNNNNGC 3 cut(s) 34, 163, 218
BstNI CCWGG 1 cut(s) 384
BstNSI RCATGY 3 cut(s) 225, 276, 898
BstSCI CCNGG 2 cut(s) 382, 927
BstV1I GCAGC 2 cut(s) 58, 150
BstV2I GAAGAC 1 cut(s) 629
BstZI CGGCCG 1 cut(s) 579
BsuI GTATCC 1 cut(s) 318
BsuRI GGCC 2 cut(s) 581, 1055
Cac8I GCNNGC 4 cut(s) 159, 223, 317, 565
CaiI CAGNNNCTG 1 cut(s) 34
CfoI GCGC 1 cut(s) 163
Cfr10I RCCGGY 2 cut(s) 65, 712
Cfr13I GGNCC 1 cut(s) 297
Csp6I GTAC 4 cut(s) 127, 489, 516, 974
CspAI ACCGGT 1 cut(s) 65
CviAII CATG 8 cut(s) 201, 218, 222, 273, 399, 661, 755, 895
CviQI GTAC 4 cut(s) 127, 489, 516, 974
DdeI CTNAG 3 cut(s) 206, 303, 330
DpnI GATC 6 cut(s) 42, 132, 341, 391, 720, 753
DpnII GATC 6 cut(s) 40, 130, 339, 389, 718, 751
EaeI YGGCCR 2 cut(s) 579, 1053
EagI CGGCCG 1 cut(s) 579
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
EclXI CGGCCG 1 cut(s) 579
Eco47I GGWCC 1 cut(s) 297
Eco52I CGGCCG 1 cut(s) 579
EcoO109I RGGNCCY 1 cut(s) 297
EcoRI GAATTC 1 cut(s) 952
EcoRII CCWGG 1 cut(s) 382
EcoT22I ATGCAT 1 cut(s) 223
Esp3I CGTCTC 2 cut(s) 116, 338
FaeI CATG 8 cut(s) 204, 221, 225, 276, 402, 664, 758, 898
FaqI GGGAC 1 cut(s) 445
FatI CATG 8 cut(s) 200, 217, 221, 272, 398, 660, 754, 894
FauI CCCGC 1 cut(s) 402
Fnu4HI GCNGC 4 cut(s) 72, 164, 479, 547
Fsp4HI GCNGC 4 cut(s) 72, 164, 479, 547
FspBI CTAG 3 cut(s) 8, 258, 564
GlaI GCGC 1 cut(s) 162
GluI GCNGC 4 cut(s) 72, 164, 479, 547
HaeII RGCGCY 1 cut(s) 164
HaeIII GGCC 2 cut(s) 581, 1055
HapII CCGG 4 cut(s) 66, 653, 713, 929
HhaI GCGC 1 cut(s) 163
Hin1II CATG 8 cut(s) 204, 221, 225, 276, 402, 664, 758, 898
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HindIII AAGCTT 1 cut(s) 372
HinfI GANTC 6 cut(s) 409, 415, 470, 625, 812, 1034
HpaII CCGG 4 cut(s) 66, 653, 713, 929
HphI GGTGA 3 cut(s) 636, 791, 837
Hpy188III TCNNGA 4 cut(s) 343, 773, 998, 1031
Hpy99I CGWCG 3 cut(s) 155, 523, 712
HpyAV CCTTC 1 cut(s) 770
HpyCH4III ACNGT 3 cut(s) 86, 642, 648
HpyCH4IV ACGT 3 cut(s) 125, 347, 518
HpyCH4V TGCA 9 cut(s) 221, 276, 319, 352, 494, 818, 833, 971, 1025
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 163, 218
HpyF3I CTNAG 3 cut(s) 206, 303, 330
HpySE526I ACGT 3 cut(s) 125, 347, 518
Hsp92II CATG 8 cut(s) 204, 221, 225, 276, 402, 664, 758, 898
HspAI GCGC 1 cut(s) 161
Kzo9I GATC 6 cut(s) 40, 130, 339, 389, 718, 751
LguI GCTCTTC 1 cut(s) 243
LmnI GCTCC 3 cut(s) 334, 475, 913
Lsp1109I GCAGC 2 cut(s) 58, 150
LweI GCATC 1 cut(s) 503
MaeI CTAG 3 cut(s) 8, 258, 564
MaeII ACGT 3 cut(s) 125, 347, 518
MaeIII GTNAC 4 cut(s) 3, 636, 642, 648
MalI GATC 6 cut(s) 42, 132, 341, 391, 720, 753
MboI GATC 6 cut(s) 40, 130, 339, 389, 718, 751
MboII GAAGA 5 cut(s) 260, 634, 870, 948, 986
MfeI CAATTG 1 cut(s) 611
MlsI TGGCCA 1 cut(s) 1055
MluCI AATT 7 cut(s) 20, 57, 242, 455, 611, 952, 1026
MluNI TGGCCA 1 cut(s) 1055
MlyI GAGTC 3 cut(s) 619, 821, 1028
MmeI TCCRAC 2 cut(s) 174, 891
Mox20I TGGCCA 1 cut(s) 1055
Mph1103I ATGCAT 1 cut(s) 223
MroXI GAANNNNTTC 2 cut(s) 242, 801
MscI TGGCCA 1 cut(s) 1055
MseI TTAA 2 cut(s) 89, 596
Msp20I TGGCCA 1 cut(s) 1055
MspI CCGG 4 cut(s) 66, 653, 713, 929
MspR9I CCNGG 2 cut(s) 384, 929
MunI CAATTG 1 cut(s) 611
MvaI CCWGG 1 cut(s) 384
MwoI GCNNNNNNNGC 3 cut(s) 34, 163, 218
NciI CCSGG 1 cut(s) 929
NdeII GATC 6 cut(s) 40, 130, 339, 389, 718, 751
NheI GCTAGC 1 cut(s) 563
NlaIII CATG 8 cut(s) 204, 221, 225, 276, 402, 664, 758, 898
NlaIV GGNNCC 2 cut(s) 477, 915
NmeAIII GCCGAG 1 cut(s) 607
NmuCI GTSAC 1 cut(s) 642
NsiI ATGCAT 1 cut(s) 223
NspI RCATGY 3 cut(s) 225, 276, 898
NspV TTCGAA 1 cut(s) 246
PaeI GCATGC 1 cut(s) 225
PciI ACATGT 1 cut(s) 894
PciSI GCTCTTC 1 cut(s) 243
PdmI GAANNNNTTC 2 cut(s) 242, 801
PfeI GAWTC 3 cut(s) 409, 415, 470
Pfl23II CGTACG 1 cut(s) 126
PinAI ACCGGT 1 cut(s) 65
PkrI GCNGC 4 cut(s) 73, 165, 480, 548
PleI GAGTC 3 cut(s) 619, 820, 1028
PpsI GAGTC 3 cut(s) 619, 820, 1028
PpuMI RGGWCCY 1 cut(s) 297
PscI ACATGT 1 cut(s) 894
Psp5II RGGWCCY 1 cut(s) 297
Psp6I CCWGG 1 cut(s) 382
PspGI CCWGG 1 cut(s) 382
PspLI CGTACG 1 cut(s) 126
PspN4I GGNNCC 2 cut(s) 477, 915
PspPI GGNCC 1 cut(s) 297
PspPPI RGGWCCY 1 cut(s) 297
PstNI CAGNNNCTG 1 cut(s) 34
RsaI GTAC 4 cut(s) 128, 490, 517, 975
RsaNI GTAC 4 cut(s) 127, 489, 516, 974
SapI GCTCTTC 1 cut(s) 243
SaqAI TTAA 2 cut(s) 89, 596
SatI GCNGC 4 cut(s) 72, 164, 479, 547
Sau3AI GATC 6 cut(s) 40, 130, 339, 389, 718, 751
Sau96I GGNCC 1 cut(s) 297
ScaI AGTACT 1 cut(s) 490
SchI GAGTC 3 cut(s) 619, 821, 1028
ScrFI CCNGG 2 cut(s) 384, 929
SfaNI GCATC 1 cut(s) 503
SfuI TTCGAA 1 cut(s) 246
SgrAI CRCCGGYG 1 cut(s) 65
SinI GGWCC 1 cut(s) 297
SphI GCATGC 1 cut(s) 225
Sse9I AATT 7 cut(s) 20, 57, 242, 455, 611, 952, 1026
SsiI CCGC 5 cut(s) 13, 395, 479, 546, 740
SspMI CTAG 3 cut(s) 8, 258, 564
StyD4I CCNGG 2 cut(s) 382, 927
TaaI ACNGT 3 cut(s) 86, 642, 648
TaiI ACGT 3 cut(s) 128, 350, 521
TaqI TCGA 6 cut(s) 43, 236, 246, 342, 388, 959
TasI AATT 7 cut(s) 20, 57, 242, 455, 611, 952, 1026
TatI WGTACW 2 cut(s) 488, 973
TauI GCSGC 2 cut(s) 481, 549
TfiI GAWTC 3 cut(s) 409, 415, 470
Tru1I TTAA 2 cut(s) 89, 596
Tru9I TTAA 2 cut(s) 89, 596
TseFI GTSAC 1 cut(s) 642
TseI GCWGC 2 cut(s) 71, 163
Tsp45I GTSAC 1 cut(s) 642
TspDTI ATGAA 4 cut(s) 173, 206, 649, 690
TspGWI ACGGA 1 cut(s) 624
VpaK11BI GGWCC 1 cut(s) 297
XapI RAATTY 1 cut(s) 952
XceI RCATGY 3 cut(s) 225, 276, 898
XcmI CCANNNNNNNNNTGG 1 cut(s) 931
XmnI GAANNNNTTC 2 cut(s) 242, 801
XspI CTAG 3 cut(s) 8, 258, 564
ZrmI AGTACT 1 cut(s) 490
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.