FvH4_6g42170

Clathrin coat assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014561
Physical Location & Seq
Reverse (-)
32971063 .. 32971554
492 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g42170.t1

Sequence Viewer

Length: 492 bp
ATGCCAAGCAAGTTAAAGAAGGCAATCGGGGCAGTGAAAGACCAGACGAGCATAAGCCTAGCCAAGGTCTCCAACGCCTCCACCTCCGCCAACCTCGAAGTCACCATCCTCAAGGCCACCTCCCACGACGTCGTTCCCATCGACGACAAGTACGTCCATGAGATCCTCACCCTCATCTCCTCCTCCAAGTCCAACGCCGCCGCCTGCGCCCAAGCCATCGCCAAACGCATCGGCAAGACTCGCAACTGGATCGTCGCCCTCAAGTCCCTCATGCTCGTCCTCCGTATCTTCCAGGACGGCGACCCCTTCTTCCCCATTGAGGTCCTCCACGCCACGAAACGTGGCGCCAAGATACTCAACCTCTCAAACTTTAAAGACGAATCCACCTCATGTCCCTGGGACTACACCTCCTTCGTCCGTAACTTTGCTCTCTACCTTGACGAGAGGCTCGACTGCTTCCTCACCGGAAAGCTCCAGCGGCGTTTCACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

164

Amino Acids

18.12

Weight (kDa)

9.54

Isoelectric Point (pI)

34.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANTH PF07651 32 - 159 2.2e-39 ANTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014561)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05020
fragaria_vesca FvH4_6g42130 FvH4_6g42160 FvH4_6g42170
malus_domestica MD09G1114300.v1.1 MD17G1106000.v1.1
prunus_persica Prupe.3G210200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0158041
rosa_laevigata RLG00000021052
rosa_multiflora Rmu_sc0000419.1_g000017
rosa_roxburghii Rroxscaffold_2G00091720
rosa_rugosa Rorug02G0465400
rosa_samantha Rh2AG531400 Rh2BG545900 Rh2CG515700 Rh2DG554000
rosa_wichuraiana Rw2G043950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 152
AatII GACGTC 1 cut(s) 132
AccB1I GGYRCC 1 cut(s) 344
AciI CCGC 4 cut(s) 87, 198, 201, 478
AclWI GGATC 2 cut(s) 157, 257
AcyI GRCGYC 2 cut(s) 129, 345
AfaI GTAC 1 cut(s) 152
AfiI CCNNNNNNNGG 2 cut(s) 64, 319
AjnI CCWGG 2 cut(s) 291, 395
AluBI AGCT 1 cut(s) 472
AluI AGCT 1 cut(s) 472
Alw26I GTCTC 1 cut(s) 73
AlwI GGATC 2 cut(s) 157, 257
AoxI GGCC 1 cut(s) 114
AspLEI GCGC 2 cut(s) 209, 347
AspS9I GGNCC 1 cut(s) 322
AsuHPI GGTGA 4 cut(s) 94, 160, 454, 478
AvaII GGWCC 1 cut(s) 322
BanI GGYRCC 1 cut(s) 344
BccI CCATC 3 cut(s) 113, 146, 224
BceAI ACGGC 1 cut(s) 313
BcgI CGANNNNNNTGC 2 cut(s) 232, 266
BciT130I CCWGG 2 cut(s) 293, 397
BcoDI GTCTC 1 cut(s) 73
BfaI CTAG 2 cut(s) 59, 490
BfoI RGCGCY 1 cut(s) 348
BisI GCNGC 3 cut(s) 198, 201, 479
BlsI GCNGC 3 cut(s) 199, 202, 480
Bme1390I CCNGG 2 cut(s) 293, 397
Bme18I GGWCC 1 cut(s) 322
BmgT120I GGNCC 1 cut(s) 322
BmiI GGNNCC 1 cut(s) 346
BmrFI CCNGG 2 cut(s) 293, 397
BmsI GCATC 1 cut(s) 237
BpmI CTGGAG 1 cut(s) 458
BpuEI CTTGAG 2 cut(s) 95, 245
BsaHI GRCGYC 2 cut(s) 129, 345
BsaI GGTCTC 1 cut(s) 73
BsaJI CCNNGG 3 cut(s) 63, 395, 396
BsaWI WCCGGW 1 cut(s) 464
BsaXI ACNNNNNCTCC 2 cut(s) 392, 422
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 319
Bse1I ACTGG 1 cut(s) 251
BseBI CCWGG 2 cut(s) 293, 397
BseDI CCNNGG 3 cut(s) 63, 395, 396
BseGI GGATG 1 cut(s) 105
BseLI CCNNNNNNNGG 2 cut(s) 64, 319
BseNI ACTGG 1 cut(s) 251
BseRI GAGGAG 2 cut(s) 169, 172
BshFI GGCC 1 cut(s) 116
BshNI GGYRCC 1 cut(s) 344
BsiSI CCGG 1 cut(s) 465
BslFI GGGAC 3 cut(s) 250, 378, 413
BslI CCNNNNNNNGG 2 cut(s) 64, 319
BsmAI GTCTC 1 cut(s) 73
BsmFI GGGAC 3 cut(s) 250, 378, 413
BsnI GGCC 1 cut(s) 116
Bso31I GGTCTC 1 cut(s) 73
Bsp143I GATC 2 cut(s) 162, 249
BspACI CCGC 4 cut(s) 87, 198, 201, 478
BspANI GGCC 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 346
BspPI GGATC 2 cut(s) 157, 257
BspT107I GGYRCC 1 cut(s) 344
BspTNI GGTCTC 1 cut(s) 73
BsrI ACTGG 1 cut(s) 251
BssECI CCNNGG 3 cut(s) 63, 395, 396
BssMI GATC 2 cut(s) 162, 249
BssNI GRCGYC 2 cut(s) 129, 345
BssT1I CCWWGG 1 cut(s) 63
Bst2UI CCWGG 2 cut(s) 293, 397
BstACI GRCGYC 2 cut(s) 129, 345
BstC8I GCNNGC 1 cut(s) 205
BstENI CCTNNNNNAGG 1 cut(s) 62
BstF5I GGATG 1 cut(s) 105
BstH2I RGCGCY 1 cut(s) 348
BstHHI GCGC 2 cut(s) 209, 347
BstKTI GATC 2 cut(s) 165, 252
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 2 cut(s) 162, 249
BstMWI GCNNNNNNNGC 4 cut(s) 29, 206, 240, 478
BstNI CCWGG 2 cut(s) 293, 397
BstSCI CCNGG 2 cut(s) 291, 395
BstX2I RGATCY 1 cut(s) 162
BstYI RGATCY 1 cut(s) 162
BsuRI GGCC 1 cut(s) 116
BtgZI GCGATG 1 cut(s) 202
BtsCI GGATG 1 cut(s) 105
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 205
CfoI GCGC 2 cut(s) 209, 347
Cfr13I GGNCC 1 cut(s) 322
Csp6I GTAC 1 cut(s) 151
CviAII CATG 3 cut(s) 158, 271, 390
CviJI RGCY 6 cut(s) 57, 62, 116, 215, 448, 472
CviKI_1 RGCY 6 cut(s) 57, 62, 116, 215, 448, 472
CviQI GTAC 1 cut(s) 151
DinI GGCGCC 1 cut(s) 346
DpnI GATC 2 cut(s) 164, 251
DpnII GATC 2 cut(s) 162, 249
DraI TTTAAA 1 cut(s) 373
DrdI GACNNNNNNGTC 1 cut(s) 152
DseDI GACNNNNNNGTC 1 cut(s) 152
EciI GGCGGA 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 63
Eco31I GGTCTC 1 cut(s) 73
Eco47I GGWCC 1 cut(s) 322
EcoNI CCTNNNNNAGG 1 cut(s) 62
EcoO109I RGGNCCY 1 cut(s) 322
EcoRII CCWGG 2 cut(s) 291, 395
EcoT14I CCWWGG 1 cut(s) 63
EgeI GGCGCC 1 cut(s) 346
EheI GGCGCC 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 3 cut(s) 161, 274, 393
FaiI YATR 4 cut(s) 53, 159, 272, 391
FaqI GGGAC 3 cut(s) 250, 378, 413
FatI CATG 3 cut(s) 157, 270, 389
Fnu4HI GCNGC 3 cut(s) 198, 201, 479
FokI GGATG 1 cut(s) 92
Fsp4HI GCNGC 3 cut(s) 198, 201, 479
FspBI CTAG 2 cut(s) 59, 490
GlaI GCGC 2 cut(s) 208, 346
GluI GCNGC 3 cut(s) 198, 201, 479
GsuI CTGGAG 1 cut(s) 458
HaeII RGCGCY 1 cut(s) 348
HaeIII GGCC 1 cut(s) 116
HapII CCGG 1 cut(s) 465
HhaI GCGC 2 cut(s) 209, 347
Hin1I GRCGYC 2 cut(s) 129, 345
Hin1II CATG 3 cut(s) 161, 274, 393
Hin6I GCGC 2 cut(s) 207, 345
HinP1I GCGC 2 cut(s) 207, 345
HinfI GANTC 2 cut(s) 238, 380
HpaII CCGG 1 cut(s) 465
HphI GGTGA 4 cut(s) 94, 160, 454, 478
Hpy99I CGWCG 4 cut(s) 131, 134, 146, 257
HpyAV CCTTC 3 cut(s) 13, 316, 421
HpyCH4IV ACGT 3 cut(s) 129, 153, 340
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 206, 240, 478
HpySE526I ACGT 3 cut(s) 129, 153, 340
Hsp92I GRCGYC 2 cut(s) 129, 345
Hsp92II CATG 3 cut(s) 161, 274, 393
HspAI GCGC 2 cut(s) 207, 345
KasI GGCGCC 1 cut(s) 344
Kzo9I GATC 2 cut(s) 162, 249
LmnI GCTCC 1 cut(s) 477
LpnPI CCDG 9 cut(s) 56, 217, 232, 278, 305, 382, 409, 478, 488
LweI GCATC 1 cut(s) 237
MaeI CTAG 2 cut(s) 59, 490
MaeII ACGT 3 cut(s) 129, 153, 340
MaeIII GTNAC 2 cut(s) 100, 419
MalI GATC 2 cut(s) 164, 251
MboI GATC 2 cut(s) 162, 249
MboII GAAGA 2 cut(s) 280, 301
MflI RGATCY 1 cut(s) 162
Mly113I GGCGCC 1 cut(s) 345
MlyI GAGTC 1 cut(s) 232
MmeI TCCRAC 2 cut(s) 96, 216
MseI TTAA 2 cut(s) 14, 372
MspA1I CMGCKG 1 cut(s) 478
MspI CCGG 1 cut(s) 465
MspR9I CCNGG 2 cut(s) 293, 397
MvaI CCWGG 2 cut(s) 293, 397
MwoI GCNNNNNNNGC 4 cut(s) 29, 206, 240, 478
NarI GGCGCC 1 cut(s) 345
NdeII GATC 2 cut(s) 162, 249
NlaIII CATG 3 cut(s) 161, 274, 393
NlaIV GGNNCC 1 cut(s) 346
NmuCI GTSAC 1 cut(s) 100
PasI CCCWGGG 1 cut(s) 396
PcsI WCGNNNNNNNCGW 3 cut(s) 138, 150, 447
PfeI GAWTC 1 cut(s) 380
PfoI TCCNGGA 1 cut(s) 291
PkrI GCNGC 3 cut(s) 199, 202, 480
PleI GAGTC 1 cut(s) 232
PluTI GGCGCC 1 cut(s) 348
PpsI GAGTC 1 cut(s) 232
PpuMI RGGWCCY 1 cut(s) 322
Psp5II RGGWCCY 1 cut(s) 322
Psp6I CCWGG 2 cut(s) 291, 395
PspGI CCWGG 2 cut(s) 291, 395
PspN4I GGNNCC 1 cut(s) 346
PspPI GGNCC 1 cut(s) 322
PspPPI RGGWCCY 1 cut(s) 322
PsuI RGATCY 1 cut(s) 162
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
SaqAI TTAA 2 cut(s) 14, 372
SatI GCNGC 3 cut(s) 198, 201, 479
Sau3AI GATC 2 cut(s) 162, 249
Sau96I GGNCC 1 cut(s) 322
SchI GAGTC 1 cut(s) 232
ScrFI CCNGG 2 cut(s) 293, 397
SfaNI GCATC 1 cut(s) 237
SfoI GGCGCC 1 cut(s) 346
SinI GGWCC 1 cut(s) 322
SmlI CTYRAG 2 cut(s) 110, 260
SmoI CTYRAG 2 cut(s) 110, 260
SsiI CCGC 4 cut(s) 87, 198, 201, 478
SspDI GGCGCC 1 cut(s) 344
SspMI CTAG 2 cut(s) 59, 490
StyD4I CCNGG 2 cut(s) 291, 395
StyI CCWWGG 1 cut(s) 63
TaiI ACGT 3 cut(s) 132, 156, 343
TaqI TCGA 3 cut(s) 96, 141, 450
TauI GCSGC 3 cut(s) 200, 203, 481
TfiI GAWTC 1 cut(s) 380
Tru1I TTAA 2 cut(s) 14, 372
Tru9I TTAA 2 cut(s) 14, 372
TscAI CASTG 1 cut(s) 39
TseFI GTSAC 1 cut(s) 100
Tsp45I GTSAC 1 cut(s) 100
TspGWI ACGGA 2 cut(s) 272, 407
TspRI CASTG 1 cut(s) 39
VpaK11BI GGWCC 1 cut(s) 322
XagI CCTNNNNNAGG 1 cut(s) 62
XspI CTAG 2 cut(s) 59, 490
ZraI GACGTC 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.