Rw2G043950

Clathrin coat assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0014561
Physical Location & Seq
Reverse (-)
70488773 .. 70491481
2709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G043950.1

Sequence Viewer

Length: 2709 bp
ATGCCAAGCAAGTTAAAGAAGGCAATCGGGGCAGTGAAAGACCAGACGAGCATAAGCCTAGCCAAGGTCTCCAATACCTCCAACCTCGCCGGCCTCGAAGTTACCATCCTCAAGGCCACCTCCCACGACGTCGTTCCGATCGACGACAAGTACGTCCGTGAGATCCTCTCCCTCATCTCCGCCTCCAAATCCAACGCCGCCACCTGCGCCCAAGCCATCGCCAAACGCATCGGCAAGACCCGCAACTGGATCGTTGCCATCAAGTCCCTCATGCTCGTCCTCCGAATCTTCCAGGACGGCGACCCCTATTTCCCCATTGAAGTCCTCCACGCCATGAAACGCGGCGCCAAGATCCTTAACCTCTCCAATTTTCGTGATGACTCGACCTCGTGTCCCTGGGACTACACCGCCTTCGTCCGCAACTTCGCTCTCTACCTTGAAGAAAGGCTCGACTGCTTCCTCACCGGAAAGCTCCAGCGGCGTTTCACCTACCAGCGAGATCAGGATTGCATTATCATCAACAACACCCGTAACCGCCGACGAGGCAATAATAATGAACCGGTGGTTCGGGACATGAAGCCGGTGATGCTGCTGGACCGGATTCAATTCTGGCAGAAGCTGCTGGATCGAGCCATTCCCTTAATCCCCTCCGGTGCCGCCAAAACGAACCGTTTAATCCTCATTTCCCTCTACGCAATCGTCCAGGAGACCTACGATCTATACAGAGACATTTCGGACGGGCTGGCCTTGCTTTTAGATAGCTTTTTTCATCTCCAATACCATTCATGTCTAAGTGCTTTTCATGCATGCGTAAAAGCCTCGAAGCAATTCGAAGAGCTTTCTACTTTTTATGGAACTTGCAAGGCGTTAGGTGTTGGGAGGACCTCTGAGTATCCAAGCGTGCAGAAAATTTCTGAGGAGCTGATCGAGACATTGCAGGAGTTTGTGAAAGACCAAGCTTCATTTCCAGGTCGATCGCCGCCGCAGTATATGAATCAGAATGTTAAAGATAAAGGGGCGGCGTCCAGCCCGGACCAATTTGAGTCTGCTAATTCGGAGCCGTTCGAGGGTGCATCGGAGAGAGGCTCAGCTTTTGGTTCGGCTTGTACGTCGTTATCGGATTTGATGAGTGTTGGGGGTATAGAAAATGGGGCTAGCCCTTCGTGGTCGGCCGAGCAAGATTTTCTTACCTCCGATGAGCAATTGTCCGAGAAGACCCTGTCTCCGTTTCAGTCACCATTACCGGAATTCATGGTTGGTAGTAATGATAAATCATCGAGCCAATCTTTGCCTCAGATTGATCTTTTTGAGGTCTTTCCACCGCAGCAAACAGATCAGGTTCAACAAGCTAATCAACAAGGTGAAAAACCTGCATGGGAACTTGTTCTTTTTGAGTCTGCAAATCAAATTGGTGCAATGGAAACATCATCGATTGCTTCGCCTCCTCCCAACCTGTTTACTTCTCCTTCTCCTAACCTGTCTCCTAATCTGTTGGAGTCATCGTCCAGCCCGGACTTGGACTATTTCTTTCAGAATTCTTTGACGAGCAATGCGTTACACCAAAACAATCCATTTCTTCAAGACAGTGTACAAGTTGAGGGCTTTGCAATTCCCACTTCCAATGAGACAAGTAGTAACGCTGGCTTAGAAAATTTGGACTATTTGTTTTCGTTCCCTTCCACATCTCAGCCATTGGCGCCACCAACATTTGGTGTGCGGAGTTCCAATGGGAGCACAGTGGCTCCAACATTTGTGCCTGACAGTTCAGAACAAAGCACAATGTTACCAACATTTTCTTCACATAATTCAAATGGGAACACAATGGCACCAACATTCTTGGCCAATAATCCAAAACAAGGCACAATGTCTTCTACATTTTCTGCACAGAACTCAAATCAGAGAAATGTAGCTCCAACGTACTTGGCCCAGAGTACAAAACAAAGCACGATGTCACCAAGGTTTTCTTCACAGAACTCAAATGAGAGGGCGGTGGCTCTAACCTTTTTTACGGCGGATACAATAGATAGCACAGTGGTACCAACAAATCCAAATGAGACTGAAATTGGACCAACATTTTCAGCTCAGAGTGGGGAAGGAAGCTCAATGTCACCACCCCTTTGTGCGCAGAGTACAAATAATAGCATAACAGCACCAACATTTCAATCAGATTTTCCGAGGGATAGGACTTTGGCACTTCCATCTTGTGCAGAAAATTTGAAAGAGACTGAAATCGCACCATCATTTTCTGCTCAAAGTCCTGAAGGAAGCTCATTTTCACCATCCTTTTGTGCGCAGAATACAAATAATAGCATAACAGCACCAACATTTCATGCAGAATTTCCAAAGGATAAGACTTTGGCCCTTTCAATTTATGCAGAAAATTCAAGAGAGAGCCGATTGTCGCAAACGTTTGGGGAGCTGACTCCTAACAATGGGAGTATAGTAGCACCAACCTTCAGTTCAGAGGAACCTAATGAGTTCATGGCCGTGCCAACTTTCTCGGCAAAGAGCAGTACTAATGGCAACGAGACACCAAGGTTTGGTTCGCCATTTGCTATCCAAATTGATGACCCGTTCGGACCCTTCTTTGGCGTGACAAGTACAAGGGAAACAATGTGTAATGGAACAGTGAATCAAGAAACTGTGTTGCATCAACAAAGACAGTGGTTGGAGCAACAAAACAAGATTATTGCTAAGCATTTGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

902

Amino Acids

98.82

Weight (kDa)

5.05

Isoelectric Point (pI)

56.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANTH PF07651 32 - 318 9e-78 ANTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014561)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05020
fragaria_vesca FvH4_6g42130 FvH4_6g42160 FvH4_6g42170
malus_domestica MD09G1114300.v1.1 MD17G1106000.v1.1
prunus_persica Prupe.3G210200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0158041
rosa_laevigata RLG00000021052
rosa_multiflora Rmu_sc0000419.1_g000017
rosa_roxburghii Rroxscaffold_2G00091720
rosa_rugosa Rorug02G0465400
rosa_samantha Rh2AG531400 Rh2BG545900 Rh2CG515700 Rh2DG554000
rosa_wichuraiana Rw2G043950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 212
AasI GACNNNNNNGTC 1 cut(s) 152
AatII GACGTC 1 cut(s) 132
Acc16I TGCGCA 2 cut(s) 2124, 2292
Acc36I ACCTGC 2 cut(s) 212, 1378
Acc65I GGTACC 1 cut(s) 2035
AccB1I GGYRCC 5 cut(s) 344, 653, 1696, 1825, 2035
AccB7I CCANNNNNTGG 2 cut(s) 1709, 2540
AccII CGCG 1 cut(s) 342
AclI AACGTT 1 cut(s) 2408
AclWI GGATC 4 cut(s) 157, 257, 346, 633
AcoI YGGCCR 3 cut(s) 1170, 1839, 2484
AcsI RAATTY 7 cut(s) 909, 1247, 1534, 1651, 2212, 2336, 2380
AcuI CTGAAG 2 cut(s) 2280, 2440
AcyI GRCGYC 4 cut(s) 129, 345, 1022, 1697
AfaI GTAC 9 cut(s) 152, 1108, 1590, 1919, 1933, 2037, 2131, 2515, 2602
AfiI CCNNNNNNNGG 9 cut(s) 64, 246, 1067, 1516, 1709, 1856, 2432, 2540, 2588
AgeI ACCGGT 1 cut(s) 559
AhdI GACNNNNNGTC 1 cut(s) 390
AjnI CCWGG 4 cut(s) 291, 395, 702, 967
Alw21I GWGCWC 1 cut(s) 1736
AlwI GGATC 4 cut(s) 157, 257, 346, 633
AlwNI CAGNNNCTG 1 cut(s) 619
AoxI GGCC 8 cut(s) 91, 114, 744, 1170, 1839, 1923, 2358, 2484
ApeKI GCWGC 3 cut(s) 589, 619, 1324
ApoI RAATTY 7 cut(s) 909, 1247, 1534, 1651, 2212, 2336, 2380
AsiGI ACCGGT 1 cut(s) 559
Asp700I GAANNNNTTC 2 cut(s) 827, 1383
Asp718I GGTACC 1 cut(s) 2035
AspLEI GCGC 5 cut(s) 209, 347, 1699, 2125, 2293
AspS9I GGNCC 7 cut(s) 595, 882, 1033, 1924, 2066, 2359, 2579
AsuC2I CCSGG 2 cut(s) 1031, 1511
AsuHPI GGTGA 8 cut(s) 454, 478, 595, 1227, 1373, 1944, 2100, 2268
AsuII TTCGAA 1 cut(s) 831
AsuNHI GCTAGC 1 cut(s) 1154
AvaII GGWCC 5 cut(s) 595, 882, 1033, 2066, 2579
BaeI ACNNNNGTAYC 2 cut(s) 2019, 2052
BalI TGGCCA 1 cut(s) 1841
BanI GGYRCC 5 cut(s) 344, 653, 1696, 1825, 2035
BauI CACGAG 1 cut(s) 388
BbsI GAAGAC 2 cut(s) 1220, 1860
Bbv12I GWGCWC 1 cut(s) 1736
BbvI GCAGC 3 cut(s) 576, 606, 1336
BccI CCATC 6 cut(s) 113, 224, 266, 2206, 2245, 2287
BceAI ACGGC 4 cut(s) 313, 1045, 2025, 2471
BcgI CGANNNNNNTGC 2 cut(s) 232, 266
BciT130I CCWGG 4 cut(s) 293, 397, 704, 969
BciVI GTATCC 2 cut(s) 903, 2008
BcnI CCSGG 2 cut(s) 1031, 1511
BfaI CTAG 2 cut(s) 59, 1155
BfoI RGCGCY 2 cut(s) 348, 1700
BfuAI ACCTGC 2 cut(s) 212, 1378
BfuI GTATCC 2 cut(s) 903, 2008
BglI GCCNNNNNGGC 1 cut(s) 543
BlpI GCTNAGC 2 cut(s) 1087, 2694
BmcAI AGTACT 1 cut(s) 2515
Bme1390I CCNGG 6 cut(s) 293, 397, 704, 969, 1031, 1511
Bme18I GGWCC 5 cut(s) 595, 882, 1033, 2066, 2579
BmeRI GACNNNNNGTC 1 cut(s) 390
BmgT120I GGNCC 7 cut(s) 595, 882, 1033, 1924, 2066, 2359, 2579
BmiI GGNNCC 9 cut(s) 346, 655, 1059, 1698, 1743, 1827, 2037, 2469, 2581
BmrFI CCNGG 6 cut(s) 293, 397, 704, 969, 1031, 1511
BmsI GCATC 4 cut(s) 237, 576, 1082, 2659
BmtI GCTAGC 1 cut(s) 1158
BpiI GAAGAC 2 cut(s) 1220, 1860
BplI GAGNNNNNCTC 4 cut(s) 152, 184, 1070, 1102
BpmI CTGGAG 1 cut(s) 458
Bpu1102I GCTNAGC 2 cut(s) 1087, 2694
Bpu14I TTCGAA 1 cut(s) 831
BpuEI CTTGAG 1 cut(s) 95
BpuMI CCSGG 2 cut(s) 1031, 1511
Bsa29I ATCGAT 1 cut(s) 1430
BsaHI GRCGYC 4 cut(s) 129, 345, 1022, 1697
BsaI GGTCTC 2 cut(s) 73, 701
BsaJI CCNNGG 6 cut(s) 63, 395, 396, 1955, 2174, 2534
BsaWI WCCGGW 5 cut(s) 464, 559, 597, 650, 1243
BsaXI ACNNNNNCTCC 6 cut(s) 1207, 1237, 1487, 1517, 1726, 1756
Bsc4I CCNNNNNNNGG 9 cut(s) 64, 246, 1067, 1516, 1709, 1856, 2432, 2540, 2588
Bse118I RCCGGY 3 cut(s) 89, 559, 580
Bse1I ACTGG 1 cut(s) 251
Bse3DI GCAATG 3 cut(s) 932, 1422, 1555
BseBI CCWGG 4 cut(s) 293, 397, 704, 969
BseCI ATCGAT 1 cut(s) 1430
BseDI CCNNGG 6 cut(s) 63, 395, 396, 1955, 2174, 2534
BseGI GGATG 2 cut(s) 105, 2279
BseLI CCNNNNNNNGG 9 cut(s) 64, 246, 1067, 1516, 1709, 1856, 2432, 2540, 2588
BseMI GCAATG 3 cut(s) 932, 1422, 1555
BseMII CTCAG 6 cut(s) 879, 906, 1101, 1307, 1700, 2096
BseNI ACTGG 1 cut(s) 251
BseRI GAGGAG 2 cut(s) 932, 1434
BseX3I CGGCCG 1 cut(s) 1170
BseXI GCAGC 3 cut(s) 576, 606, 1336
BsgI GTGCAG 3 cut(s) 923, 1866, 2226
Bsh1236I CGCG 1 cut(s) 342
Bsh1285I CGRYCG 3 cut(s) 141, 977, 1173
BshFI GGCC 8 cut(s) 93, 116, 746, 1172, 1841, 1925, 2360, 2486
BshNI GGYRCC 5 cut(s) 344, 653, 1696, 1825, 2035
BshTI ACCGGT 1 cut(s) 559
BshVI ATCGAT 1 cut(s) 1430
BsiEI CGRYCG 3 cut(s) 141, 977, 1173
BsiHKAI GWGCWC 1 cut(s) 1736
BsiSI CCGG 9 cut(s) 90, 465, 560, 581, 598, 651, 1031, 1244, 1511
BslFI GGGAC 4 cut(s) 250, 378, 413, 584
BslI CCNNNNNNNGG 9 cut(s) 64, 246, 1067, 1516, 1709, 1856, 2432, 2540, 2588
BsmFI GGGAC 4 cut(s) 250, 378, 413, 584
BsnI GGCC 8 cut(s) 93, 116, 746, 1172, 1841, 1925, 2360, 2486
Bso31I GGTCTC 2 cut(s) 73, 701
Bsp119I TTCGAA 1 cut(s) 831
Bsp1286I GDGCHC 1 cut(s) 1736
Bsp1407I TGTACA 1 cut(s) 1588
Bsp1720I GCTNAGC 2 cut(s) 1087, 2694
BspANI GGCC 8 cut(s) 93, 116, 746, 1172, 1841, 1925, 2360, 2486
BspCNI CTCAG 6 cut(s) 880, 907, 1100, 1306, 1699, 2095
BspDI ATCGAT 1 cut(s) 1430
BspFNI CGCG 1 cut(s) 342
BspLI GGNNCC 9 cut(s) 346, 655, 1059, 1698, 1743, 1827, 2037, 2469, 2581
BspMI ACCTGC 2 cut(s) 212, 1378
BspOI GCTAGC 1 cut(s) 1158
BspPI GGATC 4 cut(s) 157, 257, 346, 633
BspQI GCTCTTC 1 cut(s) 828
BspT104I TTCGAA 1 cut(s) 831
BspT107I GGYRCC 5 cut(s) 344, 653, 1696, 1825, 2035
BspTNI GGTCTC 2 cut(s) 73, 701
BsrDI GCAATG 3 cut(s) 932, 1422, 1555
BsrFI RCCGGY 3 cut(s) 89, 559, 580
BsrGI TGTACA 1 cut(s) 1588
BsrI ACTGG 1 cut(s) 251
BssAI RCCGGY 3 cut(s) 89, 559, 580
BssECI CCNNGG 6 cut(s) 63, 395, 396, 1955, 2174, 2534
BssNI GRCGYC 4 cut(s) 129, 345, 1022, 1697
BssSI CACGAG 1 cut(s) 388
BssT1I CCWWGG 3 cut(s) 63, 1955, 2534
Bst2BI CACGAG 1 cut(s) 388
Bst2UI CCWGG 4 cut(s) 293, 397, 704, 969
Bst4CI ACNGT 8 cut(s) 671, 1586, 1738, 1763, 2032, 2629, 2644, 2664
Bst6I CTCTTC 1 cut(s) 828
BstACI GRCGYC 4 cut(s) 129, 345, 1022, 1697
BstAPI GCANNNNNTGC 1 cut(s) 619
BstAUI TGTACA 1 cut(s) 1588
BstBI TTCGAA 1 cut(s) 831
BstC8I GCNNGC 6 cut(s) 91, 744, 808, 902, 1156, 1642
BstDEI CTNAG 9 cut(s) 791, 888, 915, 1087, 1293, 1645, 1686, 2082, 2694
BstENI CCTNNNNNAGG 1 cut(s) 62
BstF5I GGATG 2 cut(s) 105, 2279
BstFNI CGCG 1 cut(s) 342
BstH2I RGCGCY 2 cut(s) 348, 1700
BstHHI GCGC 5 cut(s) 209, 347, 1699, 2125, 2293
BstMCI CGRYCG 3 cut(s) 141, 977, 1173
BstNI CCWGG 4 cut(s) 293, 397, 704, 969
BstNSI RCATGY 1 cut(s) 810
BstSCI CCNGG 6 cut(s) 291, 395, 702, 967, 1029, 1509
BstUI CGCG 1 cut(s) 342
BstV1I GCAGC 3 cut(s) 576, 606, 1336
BstV2I GAAGAC 2 cut(s) 1220, 1860
BstX2I RGATCY 2 cut(s) 162, 351
BstYI RGATCY 2 cut(s) 162, 351
BstZI CGGCCG 1 cut(s) 1170
Bsu15I ATCGAT 1 cut(s) 1430
BsuI GTATCC 2 cut(s) 903, 2008
BsuRI GGCC 8 cut(s) 93, 116, 746, 1172, 1841, 1925, 2360, 2486
BsuTUI ATCGAT 1 cut(s) 1430
BtgZI GCGATG 1 cut(s) 202
BtsCI GGATG 2 cut(s) 105, 2279
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 6 cut(s) 39, 1591, 1743, 2037, 2634, 2669
BveI ACCTGC 2 cut(s) 212, 1378
Cac8I GCNNGC 6 cut(s) 91, 744, 808, 902, 1156, 1642
CaiI CAGNNNCTG 1 cut(s) 619
CfoI GCGC 5 cut(s) 209, 347, 1699, 2125, 2293
Cfr10I RCCGGY 3 cut(s) 89, 559, 580
Cfr13I GGNCC 7 cut(s) 595, 882, 1033, 1924, 2066, 2359, 2579
ClaI ATCGAT 1 cut(s) 1430
CseI GACGC 1 cut(s) 1011
Csp6I GTAC 9 cut(s) 151, 1107, 1589, 1918, 1932, 2036, 2130, 2514, 2601
CspAI ACCGGT 1 cut(s) 559
CspCI CAANNNNNGTGG 2 cut(s) 2645, 2680
CviQI GTAC 9 cut(s) 151, 1107, 1589, 1918, 1932, 2036, 2130, 2514, 2601
DdeI CTNAG 9 cut(s) 791, 888, 915, 1087, 1293, 1645, 1686, 2082, 2694
DinI GGCGCC 2 cut(s) 346, 1698
DrdI GACNNNNNNGTC 1 cut(s) 152
DriI GACNNNNNGTC 1 cut(s) 390
DseDI GACNNNNNNGTC 1 cut(s) 152
EaeI YGGCCR 3 cut(s) 1170, 1839, 2484
EagI CGGCCG 1 cut(s) 1170
Eam1104I CTCTTC 1 cut(s) 828
Eam1105I GACNNNNNGTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 828
EciI GGCGGA 2 cut(s) 169, 2027
EclXI CGGCCG 1 cut(s) 1170
Eco130I CCWWGG 3 cut(s) 63, 1955, 2534
Eco31I GGTCTC 2 cut(s) 73, 701
Eco47I GGWCC 5 cut(s) 595, 882, 1033, 2066, 2579
Eco52I CGGCCG 1 cut(s) 1170
Eco57I CTGAAG 2 cut(s) 2280, 2440
EcoNI CCTNNNNNAGG 1 cut(s) 62
EcoO109I RGGNCCY 1 cut(s) 882
EcoRI GAATTC 2 cut(s) 1247, 1534
EcoRII CCWGG 4 cut(s) 291, 395, 702, 967
EcoT14I CCWWGG 3 cut(s) 63, 1955, 2534
EcoT22I ATGCAT 1 cut(s) 808
EgeI GGCGCC 2 cut(s) 346, 1698
EheI GGCGCC 2 cut(s) 346, 1698
ErhI CCWWGG 3 cut(s) 63, 1955, 2534
FalI AAGNNNNNCTT 4 cut(s) 1170, 1202, 1948, 1980
FaqI GGGAC 4 cut(s) 250, 378, 413, 584
FauI CCCGC 1 cut(s) 248
FokI GGATG 2 cut(s) 92, 2266
FspBI CTAG 2 cut(s) 59, 1155
FspI TGCGCA 2 cut(s) 2124, 2292
GlaI GCGC 5 cut(s) 208, 346, 1698, 2124, 2292
GsuI CTGGAG 1 cut(s) 458
HaeII RGCGCY 2 cut(s) 348, 1700
HaeIII GGCC 8 cut(s) 93, 116, 746, 1172, 1841, 1925, 2360, 2486
HapII CCGG 9 cut(s) 90, 465, 560, 581, 598, 651, 1031, 1244, 1511
HgaI GACGC 1 cut(s) 1011
HhaI GCGC 5 cut(s) 209, 347, 1699, 2125, 2293
Hin1I GRCGYC 4 cut(s) 129, 345, 1022, 1697
Hin6I GCGC 5 cut(s) 207, 345, 1697, 2123, 2291
HinP1I GCGC 5 cut(s) 207, 345, 1697, 2123, 2291
HindIII AAGCTT 1 cut(s) 957
HinfI GANTC 9 cut(s) 285, 380, 601, 994, 1043, 1394, 1496, 2422, 2632
HpaII CCGG 9 cut(s) 90, 465, 560, 581, 598, 651, 1031, 1244, 1511
HphI GGTGA 8 cut(s) 454, 478, 595, 1227, 1373, 1944, 2100, 2268
Hpy166II GTNNAC 2 cut(s) 1458, 1589
Hpy188III TCNNGA 8 cut(s) 374, 503, 569, 928, 1580, 2258, 2385, 2636
Hpy8I GTNNAC 2 cut(s) 1458, 1589
Hpy99I CGWCG 5 cut(s) 131, 134, 146, 543, 1114
HpyAV CCTTC 9 cut(s) 13, 421, 1170, 1476, 1686, 2087, 2255, 2464, 2593
HpyCH4III ACNGT 8 cut(s) 671, 1586, 1738, 1763, 2032, 2629, 2644, 2664
HpyCH4IV ACGT 5 cut(s) 129, 153, 1109, 1916, 2408
HpyF3I CTNAG 9 cut(s) 791, 888, 915, 1087, 1293, 1645, 1686, 2082, 2694
HpySE526I ACGT 5 cut(s) 129, 153, 1109, 1916, 2408
Hsp92I GRCGYC 4 cut(s) 129, 345, 1022, 1697
HspAI GCGC 5 cut(s) 207, 345, 1697, 2123, 2291
KasI GGCGCC 2 cut(s) 344, 1696
KpnI GGTACC 1 cut(s) 2039
KroI GCCGGC 1 cut(s) 89
KroNI GCCGGC 1 cut(s) 91
LguI GCTCTTC 1 cut(s) 828
LmnI GCTCC 8 cut(s) 477, 919, 1057, 1731, 1747, 1915, 2416, 2671
Lsp1109I GCAGC 3 cut(s) 576, 606, 1336
LweI GCATC 4 cut(s) 237, 576, 1082, 2659
MaeI CTAG 2 cut(s) 59, 1155
MaeII ACGT 5 cut(s) 129, 153, 1109, 1916, 2408
MaeIII GTNAC 9 cut(s) 100, 530, 1233, 1554, 1634, 1782, 1950, 2106, 2593
MboII GAAGA 8 cut(s) 280, 452, 845, 1225, 1568, 1788, 1860, 1956
MfeI CAATTG 1 cut(s) 1202
MflI RGATCY 2 cut(s) 162, 351
MhlI GDGCHC 1 cut(s) 1736
MlsI TGGCCA 1 cut(s) 1841
MluNI TGGCCA 1 cut(s) 1841
Mly113I GGCGCC 2 cut(s) 345, 1697
MlyI GAGTC 5 cut(s) 374, 1052, 1403, 1505, 2416
MmeI TCCRAC 6 cut(s) 105, 216, 1473, 1769, 1937, 2649
Mox20I TGGCCA 1 cut(s) 1841
Mph1103I ATGCAT 1 cut(s) 808
MroNI GCCGGC 1 cut(s) 89
MroXI GAANNNNTTC 2 cut(s) 827, 1383
MscI TGGCCA 1 cut(s) 1841
MseI TTAA 5 cut(s) 14, 357, 641, 674, 1005
MslI CAYNNNNRTG 1 cut(s) 2486
Msp20I TGGCCA 1 cut(s) 1841
MspA1I CMGCKG 1 cut(s) 478
MspI CCGG 9 cut(s) 90, 465, 560, 581, 598, 651, 1031, 1244, 1511
MspR9I CCNGG 6 cut(s) 293, 397, 704, 969, 1031, 1511
MunI CAATTG 1 cut(s) 1202
MvaI CCWGG 4 cut(s) 293, 397, 704, 969
MvnI CGCG 1 cut(s) 342
NaeI GCCGGC 1 cut(s) 91
NarI GGCGCC 2 cut(s) 345, 1697
NciI CCSGG 2 cut(s) 1031, 1511
NgoMIV GCCGGC 1 cut(s) 89
NheI GCTAGC 1 cut(s) 1154
NlaIV GGNNCC 9 cut(s) 346, 655, 1059, 1698, 1743, 1827, 2037, 2469, 2581
NmeAIII GCCGAG 2 cut(s) 1198, 2480
NmuCI GTSAC 4 cut(s) 1233, 1950, 2106, 2593
NsbI TGCGCA 2 cut(s) 2124, 2292
NsiI ATGCAT 1 cut(s) 808
NspI RCATGY 1 cut(s) 810
NspV TTCGAA 1 cut(s) 831
PaeI GCATGC 1 cut(s) 810
PaqCI CACCTGC 1 cut(s) 212
PasI CCCWGGG 1 cut(s) 396
PciSI GCTCTTC 1 cut(s) 828
PcsI WCGNNNNNNNCGW 5 cut(s) 93, 138, 150, 1106, 1550
PdiI GCCGGC 1 cut(s) 91
PdmI GAANNNNTTC 2 cut(s) 827, 1383
PfeI GAWTC 4 cut(s) 285, 601, 994, 2632
PflFI GACNNNGTC 1 cut(s) 1219
PflMI CCANNNNNTGG 2 cut(s) 1709, 2540
PfoI TCCNGGA 2 cut(s) 291, 702
PinAI ACCGGT 1 cut(s) 559
Ple19I CGATCG 2 cut(s) 141, 977
PleI GAGTC 5 cut(s) 374, 1051, 1402, 1504, 2416
PluTI GGCGCC 2 cut(s) 348, 1700
PpsI GAGTC 5 cut(s) 374, 1051, 1402, 1504, 2416
PpuMI RGGWCCY 1 cut(s) 882
Psp1406I AACGTT 1 cut(s) 2408
Psp5II RGGWCCY 1 cut(s) 882
Psp6I CCWGG 4 cut(s) 291, 395, 702, 967
PspGI CCWGG 4 cut(s) 291, 395, 702, 967
PspN4I GGNNCC 9 cut(s) 346, 655, 1059, 1698, 1743, 1827, 2037, 2469, 2581
PspPI GGNCC 7 cut(s) 595, 882, 1033, 1924, 2066, 2359, 2579
PspPPI RGGWCCY 1 cut(s) 882
PstNI CAGNNNCTG 1 cut(s) 619
PsuI RGATCY 2 cut(s) 162, 351
PsyI GACNNNGTC 1 cut(s) 1219
PvuI CGATCG 2 cut(s) 141, 977
RsaI GTAC 9 cut(s) 152, 1108, 1590, 1919, 1933, 2037, 2131, 2515, 2602
RsaNI GTAC 9 cut(s) 151, 1107, 1589, 1918, 1932, 2036, 2130, 2514, 2601
RseI CAYNNNNRTG 1 cut(s) 2486
SapI GCTCTTC 1 cut(s) 828
SaqAI TTAA 5 cut(s) 14, 357, 641, 674, 1005
Sau96I GGNCC 7 cut(s) 595, 882, 1033, 1924, 2066, 2359, 2579
ScaI AGTACT 1 cut(s) 2515
SchI GAGTC 5 cut(s) 374, 1052, 1403, 1505, 2416
ScrFI CCNGG 6 cut(s) 293, 397, 704, 969, 1031, 1511
SduI GDGCHC 1 cut(s) 1736
SfaNI GCATC 4 cut(s) 237, 576, 1082, 2659
SfoI GGCGCC 2 cut(s) 346, 1698
SfuI TTCGAA 1 cut(s) 831
SinI GGWCC 5 cut(s) 595, 882, 1033, 2066, 2579
SmiMI CAYNNNNRTG 1 cut(s) 2486
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
SphI GCATGC 1 cut(s) 810
SspDI GGCGCC 2 cut(s) 344, 1696
SspMI CTAG 2 cut(s) 59, 1155
StyD4I CCNGG 6 cut(s) 291, 395, 702, 967, 1029, 1509
StyI CCWWGG 3 cut(s) 63, 1955, 2534
TaaI ACNGT 8 cut(s) 671, 1586, 1738, 1763, 2032, 2629, 2644, 2664
TaiI ACGT 5 cut(s) 132, 156, 1112, 1919, 2411
TatI WGTACW 5 cut(s) 1588, 1931, 2129, 2513, 2600
TauI GCSGC 7 cut(s) 200, 345, 481, 659, 982, 985, 1022
TfiI GAWTC 4 cut(s) 285, 601, 994, 2632
Tru1I TTAA 5 cut(s) 14, 357, 641, 674, 1005
Tru9I TTAA 5 cut(s) 14, 357, 641, 674, 1005
TscAI CASTG 6 cut(s) 39, 1591, 1743, 2037, 2634, 2669
TseFI GTSAC 4 cut(s) 1233, 1950, 2106, 2593
TseI GCWGC 3 cut(s) 589, 619, 1324
Tsp45I GTSAC 4 cut(s) 1233, 1950, 2106, 2593
TspGWI ACGGA 2 cut(s) 146, 1215
TspRI CASTG 6 cut(s) 39, 1591, 1743, 2037, 2634, 2669
Tth111I GACNNNGTC 1 cut(s) 1219
Van91I CCANNNNNTGG 2 cut(s) 1709, 2540
VpaK11BI GGWCC 5 cut(s) 595, 882, 1033, 2066, 2579
XagI CCTNNNNNAGG 1 cut(s) 62
XapI RAATTY 7 cut(s) 909, 1247, 1534, 1651, 2212, 2336, 2380
XceI RCATGY 1 cut(s) 810
XcmI CCANNNNNNNNNTGG 1 cut(s) 1513
XmnI GAANNNNTTC 2 cut(s) 827, 1383
XspI CTAG 2 cut(s) 59, 1155
ZraI GACGTC 1 cut(s) 130
ZrmI AGTACT 1 cut(s) 2515
Zsp2I ATGCAT 1 cut(s) 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.