MD17G1106000.v1.1

Clathrin coat assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0014561
Physical Location & Seq
Forward (+)
9032032 .. 9034590
2559 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1106000.v1.1.491

Sequence Viewer

Length: 2559 bp
ATGCCAAGCAAGCTAAAGAAGGCAATTGGGGCAGTGAAGGACCAAACGAGCATAAGCCTAGCCAAGGTCTACAACAACAACTCGGCCAACCTCGAAGTCACGGTCCTCAAAGCCACGTCCCACGACGTCGTCCCCGTCGAAGACAAATACATCCAAGAAATTCTCACGCTCATTACGTCCAACAAGTCGTACGCATCCTCCTGCGCCCAAGCCATCGCCAAGCGCATCGGCAAAACCCGCAACTGGATCGTCGCGCTCAAATCCCTCATGCTCGTCCTCCGCATCTTCCAGGACGGCGACCCCTATTTTCCAATCGAAGTCCTCCACGCCATGAAGCGCGGCGCCAAAATCCTCAACCTCTCCAACTTCCGCGACGACTCCAACTCTTGCCCGTGGGACTACACCGCCTTCGTCCGCACCTTCGCTCTCTACCTCGACGAGCGGCTGGACTGCTTCCTCACCGGGAAGCTCCAGCGGCGGTTCACCTACCAGCGCGACCAGGAATTCAATAACAACCGGAGGAGCCGCCAGTCGAACGAACCTGTCGTCCGCAACATGAAGCCGGCGGTGCTGCTTGATCGAATCCACTACTGGCAGAAACTGCTCGACAGAGCGATCGCCACGACGCCAACGGGGGCTGCCAAAACGAATCGGTTGGTGTTGATCTCGCTCTACGCGATCGTTCAAGAGACGTATGATCTGTACCGGGACATATCCGACGGCTTAGCTCTGCTTCTAGACAGCTTCTTCCATCTGCAATACCAGTCGTGCGTGAACGCCTTTCACGCCTGCGTGAAAGCCTCGAAGCAATTTGAGGAGCTCGCGTCGTTCTACGCACTCTGTAAGAGCTTGGGGGTCGGGCGGACCTCGGAATATCCGAGCGTGCAGAAAATTTCGGAGGAGCTTCTGGAGACGCTACAGGAGTTTCTGAAGGACCAGGCTTCGTTTCCGGGTCGGTCGCCGCCTAGTCATTTGCAGATTGGTTCGGATCAAATGGCAGCGGAGGAGGGTAGGGATAAAGGGTTGAGCTTTGAACGGAATGAATTCACTTCTTCTGAGCAATTCGAGGCGTCGGAGAGAGGTTCTGCTTTTGGTTCGGCTTGTACTTCGTTGGAGGATTTGATGAGTGTTGCTTACCAAAACGGGAATGTAAGCCCGTCTTGGTCGGCGGAGCAAGAGTTTTATAACTCCGAGGAACAGCCGAATAAGACCCCGGAGAATGAATCCATCGGACGGGCAAATAGGAATGGATCCACCCAATCCTTGACGGCTGAGGTTGATCGACCTCAGCCAGCGAGTTTTGAGTTTGGTCTTTTTTCTTTTGACGACTGGTCGCCGCAACCGGATCAAACAAAGAAACAAGAAAAAATAGTAGAAGAAATATTCGGAGTCGGAAATCAAGAGGGTTCGGAACAAGGATGGGAGCTTGTTCTGTTCCAGTCTGCAAGTAATCAACCGCCATTGCAAACATCATCGCCGCCACCAGCTTCTGCTAATAATCTGTTTGATTCATCAAACTTTGACAGTTTATTTCAGCAATCTTCAGTGCCCCAACACCAATACAATCCGTTTCTTCAAGACACAATACCAATCGAGAGCTTCGCAACCTCTTCAAGTTCGAATACCGCCAACAGCAATGGCTTTGGAAATTTCGGAGACGATTTCTTTTCTTTCCCTACTACATCTCAAACACCGGCACCAACATTTTGCATGCAGAATTCAAATGGTGGCACAATAGCGCCAACGTTTCGCACGCAAAATACAAATAATACAACGACGGTATCGACATTGCACGCGCATACTACAAATAATACCACAATGGCACCGCCATTTGGCGCGCCAAGTCCAAAAGGGAGCACAATTTCACCAACATTGTGGTCACAGCACACCAGTAAAAGCACAATGACACCAACATTTGGCGAGCCAAGTCCAGAAGGGAGCACAATTTCACCAACATTGTGGTCACAGCACACCAACGAAAGCACAATGGCACCAACATTTGGCGCGTGGAGCATGAATGAGTCCACAACAGCGCCAACATTTTGTGCTCAGAGTTCCGTAGAGTTGGCAGTGGCCCCTGCTAGCAAGCGGAGTATAAATGACACAAAAACAGCACCGCCGGTTTGTGCTCAGAGTCCAGAAGAGAAAACAGCGGCAACACCAATATTTTGGGCACGGGATACAAATGAGGGCACATATGCACCAACATTTTGTGCAGTGACTCATTATAACAAGAGTGTAGCACCAACATTTCGTGCTGAAAATCGTAATGACATTACTGTGACACCTACATTTCGTGCTGAAAATCGTAATGACACAATTGTGGCACCTACATTTTGTACAAACGATGCTAATGAGTTTCTGGCTGCACCAACTTTCCGTGCGCGAAGTGAAAACGGGTGGGGTACTACAGAAAATGACCCATTTGCAACGTTCTCAAACGTTAGAAGTAGTAGTGAACCTATATGTAACGGATTGATGAATCATGAAAGTCTGTTGCATCAACAGAGACTATGGTTGGAACAGCAAAACAAGATTATTGCTAAACACATGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

853

Amino Acids

94.47

Weight (kDa)

5.44

Isoelectric Point (pI)

58.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANTH PF07651 31 - 312 1.3e-80 ANTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014561)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05020
fragaria_vesca FvH4_6g42130 FvH4_6g42160 FvH4_6g42170
malus_domestica MD09G1114300.v1.1 MD17G1106000.v1.1
prunus_persica Prupe.3G210200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0158041
rosa_laevigata RLG00000021052
rosa_multiflora Rmu_sc0000419.1_g000017
rosa_roxburghii Rroxscaffold_2G00091720
rosa_rugosa Rorug02G0465400
rosa_samantha Rh2AG531400 Rh2BG545900 Rh2CG515700 Rh2DG554000
rosa_wichuraiana Rw2G043950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1185, 2229
AatII GACGTC 1 cut(s) 129
AccB1I GGYRCC 5 cut(s) 341, 1696, 1822, 1990, 2326
AccB7I CCANNNNNTGG 2 cut(s) 1916, 2000
AccBSI CCGCTC 1 cut(s) 442
AccI GTMKAC 1 cut(s) 69
AclI AACGTT 3 cut(s) 1745, 2432, 2442
AclWI GGATC 5 cut(s) 254, 996, 1245, 1258, 1353
AcoI YGGCCR 1 cut(s) 84
AcsI RAATTY 6 cut(s) 159, 503, 891, 1043, 1648, 1717
AcuI CTGAAG 2 cut(s) 950, 1527
AcyI GRCGYC 4 cut(s) 126, 342, 626, 1070
AfaI GTAC 5 cut(s) 191, 704, 1105, 2341, 2407
AfiI CCNNNNNNNGG 6 cut(s) 64, 243, 1233, 1832, 1916, 2000
AflIII ACRYGT 1 cut(s) 2550
AgsI TTSAA 6 cut(s) 508, 686, 1034, 1577, 1614, 1722
AhdI GACNNNNNGTC 1 cut(s) 1330
AjiI CACGTC 1 cut(s) 117
AjnI CCWGG 3 cut(s) 288, 498, 936
AleI CACNNNNGTG 1 cut(s) 2321
AloI GAACNNNNNNTCC 2 cut(s) 531, 563
Alw21I GWGCWC 5 cut(s) 822, 1859, 1943, 2050, 2131
Alw26I GTCTC 4 cut(s) 683, 905, 1650, 2503
AlwI GGATC 5 cut(s) 254, 996, 1245, 1258, 1353
AlwNI CAGNNNCTG 2 cut(s) 601, 1490
AoxI GGCC 2 cut(s) 84, 2073
ApeKI GCWGC 4 cut(s) 571, 638, 998, 2366
ApoI RAATTY 6 cut(s) 159, 503, 891, 1043, 1648, 1717
ArsI GACNNNNNNTTYG 4 cut(s) 87, 119, 531, 563
AscI GGCGCGCC 1 cut(s) 1836
AsiSI GCGATCGC 1 cut(s) 618
Asp700I GAANNNNTTC 1 cut(s) 1043
AspS9I GGNCC 5 cut(s) 40, 103, 864, 934, 2074
AsuC2I CCSGG 4 cut(s) 463, 707, 951, 1214
AsuHPI GGTGA 4 cut(s) 451, 475, 1857, 1941
AsuII TTCGAA 1 cut(s) 1619
AsuNHI GCTAGC 1 cut(s) 2081
AvaII GGWCC 4 cut(s) 40, 103, 864, 934
BaeGI GKGCMC 3 cut(s) 1551, 2176, 2195
BaeI ACNNNNGTAYC 2 cut(s) 1764, 1797
BamHI GGATCC 1 cut(s) 1250
BanI GGYRCC 5 cut(s) 341, 1696, 1822, 1990, 2326
BanII GRGCYC 1 cut(s) 822
BbsI GAAGAC 1 cut(s) 147
Bbv12I GWGCWC 5 cut(s) 822, 1859, 1943, 2050, 2131
BbvCI CCTCAGC 2 cut(s) 1272, 1287
BbvI GCAGC 4 cut(s) 558, 625, 1010, 2353
BccI CCATC 4 cut(s) 221, 759, 1235, 1413
BceAI ACGGC 3 cut(s) 310, 736, 1284
BcgI CGANNNNNNTGC 2 cut(s) 229, 263
BciT130I CCWGG 3 cut(s) 290, 500, 938
BciVI GTATCC 1 cut(s) 2173
BcnI CCSGG 4 cut(s) 463, 707, 951, 1214
BcoDI GTCTC 4 cut(s) 683, 905, 1650, 2503
BfaI CTAG 4 cut(s) 59, 737, 966, 2082
BfmI CTRYAG 2 cut(s) 917, 2409
BfoI RGCGCY 3 cut(s) 345, 1742, 2036
BfuI GTATCC 1 cut(s) 2173
BlpI GCTNAGC 1 cut(s) 724
Bme1390I CCNGG 7 cut(s) 290, 463, 500, 707, 938, 951, 1214
Bme18I GGWCC 4 cut(s) 40, 103, 864, 934
BmeRI GACNNNNNGTC 1 cut(s) 1330
BmgBI CACGTC 1 cut(s) 117
BmgT120I GGNCC 5 cut(s) 40, 103, 864, 934, 2074
BmiI GGNNCC 8 cut(s) 343, 524, 1252, 1698, 1824, 1992, 2076, 2328
BmrFI CCNGG 7 cut(s) 290, 463, 500, 707, 938, 951, 1214
BmsI GCATC 5 cut(s) 203, 234, 291, 2338, 2509
BmtI GCTAGC 1 cut(s) 2085
BpiI GAAGAC 1 cut(s) 147
BpmI CTGGAG 2 cut(s) 455, 929
Bpu10I CCTNAGC 2 cut(s) 1272, 1287
Bpu1102I GCTNAGC 1 cut(s) 724
Bpu14I TTCGAA 1 cut(s) 1619
BpuMI CCSGG 4 cut(s) 463, 707, 951, 1214
BsaHI GRCGYC 4 cut(s) 126, 342, 626, 1070
BsaJI CCNNGG 5 cut(s) 63, 392, 867, 1191, 1212
BsaWI WCCGGW 2 cut(s) 516, 1342
BsaXI ACNNNNNCTCC 6 cut(s) 182, 212, 809, 839, 1163, 1193
Bsc4I CCNNNNNNNGG 6 cut(s) 64, 243, 1233, 1832, 1916, 2000
Bse118I RCCGGY 3 cut(s) 562, 1693, 2119
Bse1I ACTGG 7 cut(s) 248, 529, 596, 763, 1334, 1438, 1890
Bse3DI GCAATG 3 cut(s) 1460, 1642, 1787
BseBI CCWGG 3 cut(s) 290, 500, 938
BseDI CCNNGG 5 cut(s) 63, 392, 867, 1191, 1212
BseGI GGATG 3 cut(s) 150, 194, 1424
BseLI CCNNNNNNNGG 6 cut(s) 64, 243, 1233, 1832, 1916, 2000
BseMI GCAATG 3 cut(s) 1460, 1642, 1787
BseMII CTCAG 5 cut(s) 1047, 1263, 1301, 2063, 2144
BseNI ACTGG 7 cut(s) 248, 529, 596, 763, 1334, 1438, 1890
BsePI GCGCGC 1 cut(s) 1836
BseRI GAGGAG 4 cut(s) 535, 830, 914, 1019
BseSI GKGCMC 3 cut(s) 1551, 2176, 2195
BseXI GCAGC 4 cut(s) 558, 625, 1010, 2353
BsgI GTGCAG 3 cut(s) 905, 2235, 2352
Bsh1285I CGRYCG 3 cut(s) 618, 681, 959
BshFI GGCC 2 cut(s) 86, 2075
BshNI GGYRCC 5 cut(s) 341, 1696, 1822, 1990, 2326
BsiEI CGRYCG 3 cut(s) 618, 681, 959
BsiHKAI GWGCWC 5 cut(s) 822, 1859, 1943, 2050, 2131
BsiSI CCGG 9 cut(s) 462, 517, 563, 706, 950, 1214, 1343, 1694, 2120
BsiWI CGTACG 1 cut(s) 189
BslFI GGGAC 4 cut(s) 103, 116, 410, 722
BslI CCNNNNNNNGG 6 cut(s) 64, 243, 1233, 1832, 1916, 2000
BsmAI GTCTC 4 cut(s) 683, 905, 1650, 2503
BsmBI CGTCTC 3 cut(s) 683, 905, 1650
BsmFI GGGAC 4 cut(s) 103, 116, 410, 722
BsnI GGCC 2 cut(s) 86, 2075
Bsp119I TTCGAA 1 cut(s) 1619
Bsp1286I GDGCHC 8 cut(s) 822, 1551, 1859, 1943, 2050, 2131, 2176, 2195
Bsp1407I TGTACA 1 cut(s) 2339
Bsp1720I GCTNAGC 1 cut(s) 724
BspANI GGCC 2 cut(s) 86, 2075
BspCNI CTCAG 5 cut(s) 1048, 1264, 1300, 2062, 2143
BspHI TCATGA 1 cut(s) 2485
BspLI GGNNCC 8 cut(s) 343, 524, 1252, 1698, 1824, 1992, 2076, 2328
BspOI GCTAGC 1 cut(s) 2085
BspPI GGATC 5 cut(s) 254, 996, 1245, 1258, 1353
BspT104I TTCGAA 1 cut(s) 1619
BspT107I GGYRCC 5 cut(s) 341, 1696, 1822, 1990, 2326
BsrBI CCGCTC 1 cut(s) 442
BsrDI GCAATG 3 cut(s) 1460, 1642, 1787
BsrFI RCCGGY 3 cut(s) 562, 1693, 2119
BsrGI TGTACA 1 cut(s) 2339
BsrI ACTGG 7 cut(s) 248, 529, 596, 763, 1334, 1438, 1890
BssAI RCCGGY 3 cut(s) 562, 1693, 2119
BssECI CCNNGG 5 cut(s) 63, 392, 867, 1191, 1212
BssHII GCGCGC 1 cut(s) 1836
BssNI GRCGYC 4 cut(s) 126, 342, 626, 1070
BssT1I CCWWGG 1 cut(s) 63
Bst2UI CCWGG 3 cut(s) 290, 500, 938
Bst4CI ACNGT 4 cut(s) 103, 1526, 1780, 2281
Bst6I CTCTTC 2 cut(s) 1615, 2136
BstACI GRCGYC 4 cut(s) 126, 342, 626, 1070
BstAPI GCANNNNNTGC 1 cut(s) 601
BstAUI TGTACA 1 cut(s) 2339
BstBI TTCGAA 1 cut(s) 1619
BstDEI CTNAG 6 cut(s) 724, 1056, 1272, 1287, 2049, 2130
BstDSI CCRYGG 1 cut(s) 392
BstENI CCTNNNNNAGG 1 cut(s) 62
BstF5I GGATG 3 cut(s) 150, 194, 1424
BstH2I RGCGCY 3 cut(s) 345, 1742, 2036
BstMAI GTCTC 4 cut(s) 683, 905, 1650, 2503
BstMCI CGRYCG 3 cut(s) 618, 681, 959
BstMWI GCNNNNNNNGC 8 cut(s) 10, 29, 237, 475, 568, 601, 785, 2010
BstNI CCWGG 3 cut(s) 290, 500, 938
BstNSI RCATGY 2 cut(s) 1714, 2554
BstSCI CCNGG 7 cut(s) 288, 461, 498, 705, 936, 949, 1212
BstSFI CTRYAG 2 cut(s) 917, 2409
BstSLI GKGCMC 3 cut(s) 1551, 2176, 2195
BstV1I GCAGC 4 cut(s) 558, 625, 1010, 2353
BstV2I GAAGAC 1 cut(s) 147
BstX2I RGATCY 1 cut(s) 1250
BstXI CCANNNNNNTGG 3 cut(s) 1875, 1959, 2169
BstYI RGATCY 1 cut(s) 1250
BsuI GTATCC 1 cut(s) 2173
BsuRI GGCC 2 cut(s) 86, 2075
BtgI CCRYGG 1 cut(s) 392
BtgZI GCGATG 2 cut(s) 199, 1458
BtrI CACGTC 1 cut(s) 117
BtsCI GGATG 3 cut(s) 150, 194, 1424
BtsI GCAGTG 3 cut(s) 39, 2076, 2223
BtsIMutI CAGTG 4 cut(s) 39, 1551, 2076, 2223
CaiI CAGNNNCTG 2 cut(s) 601, 1490
CciI TCATGA 1 cut(s) 2485
Cfr10I RCCGGY 3 cut(s) 562, 1693, 2119
Cfr13I GGNCC 5 cut(s) 40, 103, 864, 934, 2074
CseI GACGC 4 cut(s) 634, 813, 922, 1059
Csp6I GTAC 5 cut(s) 190, 703, 1104, 2340, 2406
CviAII CATG 7 cut(s) 268, 331, 556, 1711, 2014, 2486, 2551
CviQI GTAC 5 cut(s) 190, 703, 1104, 2340, 2406
DdeI CTNAG 6 cut(s) 724, 1056, 1272, 1287, 2049, 2130
DinI GGCGCC 1 cut(s) 343
DriI GACNNNNNGTC 1 cut(s) 1330
EaeI YGGCCR 1 cut(s) 84
Eam1104I CTCTTC 2 cut(s) 1615, 2136
Eam1105I GACNNNNNGTC 1 cut(s) 1330
EarI CTCTTC 2 cut(s) 1615, 2136
EciI GGCGGA 2 cut(s) 877, 1184
Ecl136II GAGCTC 1 cut(s) 820
Eco130I CCWWGG 1 cut(s) 63
Eco24I GRGCYC 1 cut(s) 822
Eco47I GGWCC 4 cut(s) 40, 103, 864, 934
Eco53kI GAGCTC 1 cut(s) 820
Eco57I CTGAAG 2 cut(s) 950, 1527
EcoICRI GAGCTC 1 cut(s) 820
EcoNI CCTNNNNNAGG 1 cut(s) 62
EcoRI GAATTC 3 cut(s) 503, 1043, 1717
EcoRII CCWGG 3 cut(s) 288, 498, 936
EcoT14I CCWWGG 1 cut(s) 63
EcoT38I GRGCYC 1 cut(s) 822
EgeI GGCGCC 1 cut(s) 343
EheI GGCGCC 1 cut(s) 343
ErhI CCWWGG 1 cut(s) 63
Esp3I CGTCTC 3 cut(s) 683, 905, 1650
FaeI CATG 7 cut(s) 271, 334, 559, 1714, 2017, 2489, 2554
FalI AAGNNNNNCTT 2 cut(s) 1144, 1176
FaqI GGGAC 4 cut(s) 103, 116, 410, 722
FatI CATG 7 cut(s) 267, 330, 555, 1710, 2013, 2485, 2550
FauI CCCGC 1 cut(s) 245
FauNDI CATATG 1 cut(s) 2197
FblI GTMKAC 1 cut(s) 69
FokI GGATG 3 cut(s) 137, 181, 1431
FriOI GRGCYC 1 cut(s) 822
FspBI CTAG 4 cut(s) 59, 737, 966, 2082
GsuI CTGGAG 2 cut(s) 455, 929
HaeII RGCGCY 3 cut(s) 345, 1742, 2036
HaeIII GGCC 2 cut(s) 86, 2075
HapII CCGG 9 cut(s) 462, 517, 563, 706, 950, 1214, 1343, 1694, 2120
HgaI GACGC 4 cut(s) 634, 813, 922, 1059
Hin1I GRCGYC 4 cut(s) 126, 342, 626, 1070
Hin1II CATG 7 cut(s) 271, 334, 559, 1714, 2017, 2489, 2554
HpaII CCGG 9 cut(s) 462, 517, 563, 706, 950, 1214, 1343, 1694, 2120
HphI GGTGA 4 cut(s) 451, 475, 1857, 1941
Hpy166II GTNNAC 5 cut(s) 70, 483, 775, 2025, 2459
Hpy8I GTNNAC 5 cut(s) 70, 483, 775, 2025, 2459
HpyAV CCTTC 6 cut(s) 13, 31, 418, 430, 925, 1928
HpyCH4III ACNGT 4 cut(s) 103, 1526, 1780, 2281
HpyCH4IV ACGT 7 cut(s) 116, 126, 176, 692, 1745, 2432, 2442
HpyF10VI GCNNNNNNNGC 8 cut(s) 10, 29, 237, 475, 568, 601, 785, 2010
HpyF3I CTNAG 6 cut(s) 724, 1056, 1272, 1287, 2049, 2130
HpySE526I ACGT 7 cut(s) 116, 126, 176, 692, 1745, 2432, 2442
Hsp92I GRCGYC 4 cut(s) 126, 342, 626, 1070
Hsp92II CATG 7 cut(s) 271, 334, 559, 1714, 2017, 2489, 2554
KasI GGCGCC 1 cut(s) 341
KroI GCCGGC 1 cut(s) 562
KroNI GCCGGC 1 cut(s) 564
LmnI GCTCC 9 cut(s) 474, 522, 817, 901, 1171, 1423, 1854, 1938, 2010
Lsp1109I GCAGC 4 cut(s) 558, 625, 1010, 2353
LweI GCATC 5 cut(s) 203, 234, 291, 2338, 2509
MaeI CTAG 4 cut(s) 59, 737, 966, 2082
MaeII ACGT 7 cut(s) 116, 126, 176, 692, 1745, 2432, 2442
MaeIII GTNAC 6 cut(s) 97, 1878, 1962, 2218, 2281, 2468
MbiI CCGCTC 1 cut(s) 442
MboII GAAGA 9 cut(s) 152, 277, 739, 1044, 1388, 1533, 1565, 1602, 2153
MfeI CAATTG 2 cut(s) 24, 2319
MflI RGATCY 1 cut(s) 1250
MhlI GDGCHC 8 cut(s) 822, 1551, 1859, 1943, 2050, 2131, 2176, 2195
Mly113I GGCGCC 1 cut(s) 342
MlyI GAGTC 5 cut(s) 371, 1398, 2030, 2143, 2215
MmeI TCCRAC 8 cut(s) 204, 387, 405, 741, 1053, 1092, 1372, 2499
MroNI GCCGGC 1 cut(s) 562
MroXI GAANNNNTTC 1 cut(s) 1043
MslI CAYNNNNRTG 2 cut(s) 2279, 2321
MspA1I CMGCKG 3 cut(s) 475, 1001, 2153
MspI CCGG 9 cut(s) 462, 517, 563, 706, 950, 1214, 1343, 1694, 2120
MspR9I CCNGG 7 cut(s) 290, 463, 500, 707, 938, 951, 1214
MteI GCGCNGCGC 1 cut(s) 340
MunI CAATTG 2 cut(s) 24, 2319
MvaI CCWGG 3 cut(s) 290, 500, 938
MwoI GCNNNNNNNGC 8 cut(s) 10, 29, 237, 475, 568, 601, 785, 2010
NaeI GCCGGC 1 cut(s) 564
NarI GGCGCC 1 cut(s) 342
NciI CCSGG 4 cut(s) 463, 707, 951, 1214
NdeI CATATG 1 cut(s) 2197
NgoMIV GCCGGC 1 cut(s) 562
NheI GCTAGC 1 cut(s) 2081
NlaIII CATG 7 cut(s) 271, 334, 559, 1714, 2017, 2489, 2554
NlaIV GGNNCC 8 cut(s) 343, 524, 1252, 1698, 1824, 1992, 2076, 2328
NmeAIII GCCGAG 1 cut(s) 62
NmuCI GTSAC 5 cut(s) 97, 1878, 1962, 2218, 2281
NspI RCATGY 2 cut(s) 1714, 2554
NspV TTCGAA 1 cut(s) 1619
OliI CACNNNNGTG 1 cut(s) 2321
PaeI GCATGC 1 cut(s) 1714
PagI TCATGA 1 cut(s) 2485
PalAI GGCGCGCC 1 cut(s) 1836
PauI GCGCGC 1 cut(s) 1836
PciI ACATGT 1 cut(s) 2550
PcsI WCGNNNNNNNCGW 7 cut(s) 132, 135, 173, 543, 674, 875, 1781
PdiI GCCGGC 1 cut(s) 564
PdmI GAANNNNTTC 1 cut(s) 1043
PfeI GAWTC 5 cut(s) 582, 649, 1223, 1508, 2482
Pfl23II CGTACG 1 cut(s) 189
PflFI GACNNNGTC 1 cut(s) 128
PflMI CCANNNNNTGG 2 cut(s) 1916, 2000
PfoI TCCNGGA 1 cut(s) 288
Ple19I CGATCG 2 cut(s) 618, 681
PleI GAGTC 5 cut(s) 371, 1397, 2029, 2142, 2215
PluTI GGCGCC 1 cut(s) 345
PpsI GAGTC 5 cut(s) 371, 1397, 2029, 2142, 2215
PscI ACATGT 1 cut(s) 2550
PsiI TTATAA 2 cut(s) 1185, 2229
Psp124BI GAGCTC 1 cut(s) 822
Psp1406I AACGTT 3 cut(s) 1745, 2432, 2442
Psp6I CCWGG 3 cut(s) 288, 498, 936
PspGI CCWGG 3 cut(s) 288, 498, 936
PspLI CGTACG 1 cut(s) 189
PspN4I GGNNCC 8 cut(s) 343, 524, 1252, 1698, 1824, 1992, 2076, 2328
PspPI GGNCC 5 cut(s) 40, 103, 864, 934, 2074
PstNI CAGNNNCTG 2 cut(s) 601, 1490
PsuI RGATCY 1 cut(s) 1250
PsyI GACNNNGTC 1 cut(s) 128
PteI GCGCGC 1 cut(s) 1836
PvuI CGATCG 2 cut(s) 618, 681
RgaI GCGATCGC 1 cut(s) 618
RsaI GTAC 5 cut(s) 191, 704, 1105, 2341, 2407
RsaNI GTAC 5 cut(s) 190, 703, 1104, 2340, 2406
RseI CAYNNNNRTG 2 cut(s) 2279, 2321
SacI GAGCTC 1 cut(s) 822
Sau96I GGNCC 5 cut(s) 40, 103, 864, 934, 2074
SchI GAGTC 5 cut(s) 371, 1398, 2030, 2143, 2215
ScrFI CCNGG 7 cut(s) 290, 463, 500, 707, 938, 951, 1214
SduI GDGCHC 8 cut(s) 822, 1551, 1859, 1943, 2050, 2131, 2176, 2195
SfaAI GCGATCGC 1 cut(s) 618
SfaNI GCATC 5 cut(s) 203, 234, 291, 2338, 2509
SfcI CTRYAG 2 cut(s) 917, 2409
SfoI GGCGCC 1 cut(s) 343
SfuI TTCGAA 1 cut(s) 1619
SgfI GCGATCGC 1 cut(s) 618
SgsI GGCGCGCC 1 cut(s) 1836
SinI GGWCC 4 cut(s) 40, 103, 864, 934
SmiMI CAYNNNNRTG 2 cut(s) 2279, 2321
SphI GCATGC 1 cut(s) 1714
SspDI GGCGCC 1 cut(s) 341
SspI AATATT 2 cut(s) 1383, 2166
SspMI CTAG 4 cut(s) 59, 737, 966, 2082
SstI GAGCTC 1 cut(s) 822
StyD4I CCNGG 7 cut(s) 288, 461, 498, 705, 936, 949, 1212
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 4 cut(s) 103, 1526, 1780, 2281
TaiI ACGT 7 cut(s) 119, 129, 179, 695, 1748, 2435, 2445
TaqII GACCGA 1 cut(s) 945
TatI WGTACW 2 cut(s) 1103, 2339
TauI GCSGC 8 cut(s) 342, 445, 478, 528, 964, 1339, 1480, 2156
TfiI GAWTC 5 cut(s) 582, 649, 1223, 1508, 2482
TscAI CASTG 4 cut(s) 39, 1551, 2076, 2223
TseFI GTSAC 5 cut(s) 97, 1878, 1962, 2218, 2281
TseI GCWGC 4 cut(s) 571, 638, 998, 2366
Tsp45I GTSAC 5 cut(s) 97, 1878, 1962, 2218, 2281
TspDTI ATGAA 8 cut(s) 347, 572, 1056, 1236, 1500, 2030, 2495, 2502
TspGWI ACGGA 5 cut(s) 1051, 1557, 2047, 2369, 2487
TspRI CASTG 4 cut(s) 39, 1551, 2076, 2223
Tth111I GACNNNGTC 1 cut(s) 128
Van91I CCANNNNNTGG 2 cut(s) 1916, 2000
VpaK11BI GGWCC 4 cut(s) 40, 103, 864, 934
XagI CCTNNNNNAGG 1 cut(s) 62
XapI RAATTY 6 cut(s) 159, 503, 891, 1043, 1648, 1717
XbaI TCTAGA 1 cut(s) 736
XceI RCATGY 2 cut(s) 1714, 2554
XmiI GTMKAC 1 cut(s) 69
XmnI GAANNNNTTC 1 cut(s) 1043
XspI CTAG 4 cut(s) 59, 737, 966, 2082
ZraI GACGTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.