Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009058

Physical Location & Seq

Genomic Coordinates Forward (+)

33602322 .. 33603608

Gene Structure 1287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g43420.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGATAGGTCTTTTGGTTCATCGTCTATGATCAGAGCTGTTCCTTCTAATGAAACAGCAGCGACGTTCTCCTGCAATGAGGAGGAAGAGAGTGGTTGGACTAAGTACTTCGAAGATTTCTCGAACAATAATAGACAAGAACAGGCTAGTTTCTGCTCTTCTTTGGTTTCTGATGCTTCTTCTGGTGCCGCATGGAGAGTCTCGCATAACAACAGCGTGCCGAAAAAATTGAAGAAAACAAGAACCAAGAAGATTGGGGATCATGATTTGGAGGATACTGCTAGTTCTCCTGTTAATAGTCCCAAGATTGGTGATTTCAGACCAGTTGATCATATGAATCCCAGAAAGATAGAAGATCATCGTATCAACATTAATTCTTTGGGTAAAGAGCATTTTGCAGAAATGAAGCAGGCAGATGAAAACAGTAGTGATTGTTCAGGGAAAAATGGTCAAAATACAGACTTAAAGAAAAAAGGGTTGTGTTTGGTTCCTTTAAATCTGTTAGTGAATTATCTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009888 GO:0010087 GO:0010089 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

19.24

Weight (kDa)

6.52

Isoelectric Point (pI)

45.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21710 AT3G21710
fragaria_vesca	FvH4_6g43420 FvH4_6g43420 FvH4_6g43420 FvH4_6g43420
malus_domestica	MD09G1107000.v1.1 MD17G1094800.v1.1
prunus_persica	Prupe.3G218700_v2.0.a1
pyrus_communis	pycom09g02940 pycom17g09130
rosa_chinensis	RchiOBHm_Chr2g0159761
rosa_laevigata	RLG00000021180
rosa_multiflora	Rmu_sc0016393.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090260
rosa_rugosa	Rorug02G0478400 Rorug02G0478500
rosa_samantha	Rh2AG545100 Rh2BG558000 Rh2CG528200 Rh2DG567400
rosa_wichuraiana	Rw2G045070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	185
AciI	CCGC	1 cut(s)	189
AclWI	GGATC	1 cut(s)	267
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	308
AgsI	TTSAA	1 cut(s)	232
AluBI	AGCT	1 cut(s)	38
AluI	AGCT	1 cut(s)	38
Alw26I	GTCTC	1 cut(s)	205
AlwI	GGATC	1 cut(s)	267
ApeKI	GCWGC	1 cut(s)	59
AseI	ATTAAT	1 cut(s)	372
AsuHPI	GGTGA	1 cut(s)	323
AsuII	TTCGAA	1 cut(s)	111
BanI	GGYRCC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	71
BciVI	GTATCC	1 cut(s)	268
BclI	TGATCA	2 cut(s)	30, 328
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	2 cut(s)	147, 282
BfuI	GTATCC	1 cut(s)	268
BisI	GCNGC	2 cut(s)	60, 189
BlsI	GCNGC	2 cut(s)	61, 190
BmcAI	AGTACT	1 cut(s)	107
BmiI	GGNNCC	2 cut(s)	187, 489
BmsI	GCATC	1 cut(s)	163
Bpu14I	TTCGAA	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse1I	ACTGG	1 cut(s)	323
Bse3DI	GCAATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseMI	GCAATG	1 cut(s)	82
BseNI	ACTGG	1 cut(s)	323
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	71
BshNI	GGYRCC	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	285
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmAI	GTCTC	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	285
Bsp119I	TTCGAA	1 cut(s)	111
Bsp143I	GATC	4 cut(s)	30, 259, 328, 355
BspACI	CCGC	1 cut(s)	189
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	187, 489
BspPI	GGATC	1 cut(s)	267
BspQI	GCTCTTC	1 cut(s)	163
BspT104I	TTCGAA	1 cut(s)	111
BspT107I	GGYRCC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	323
BssMI	GATC	4 cut(s)	30, 259, 328, 355
Bst4CI	ACNGT	1 cut(s)	425
Bst6I	CTCTTC	2 cut(s)	81, 163
BstBI	TTCGAA	1 cut(s)	111
BstC8I	GCNNGC	2 cut(s)	218, 411
BstDEI	CTNAG	1 cut(s)	102
BstKTI	GATC	4 cut(s)	33, 262, 331, 358
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	4 cut(s)	30, 259, 328, 355
BstV1I	GCAGC	1 cut(s)	71
BsuI	GTATCC	1 cut(s)	268
Cac8I	GCNNGC	2 cut(s)	218, 411
CciI	TCATGA	1 cut(s)	262
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	2 cut(s)	192, 263
CviJI	RGCY	2 cut(s)	38, 146
CviKI_1	RGCY	2 cut(s)	38, 146
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	4 cut(s)	32, 261, 330, 357
DpnII	GATC	4 cut(s)	30, 259, 328, 355
DraI	TTTAAA	1 cut(s)	495
Eam1104I	CTCTTC	2 cut(s)	81, 163
EarI	CTCTTC	2 cut(s)	81, 163
FaeI	CATG	2 cut(s)	195, 266
FaiI	YATR	6 cut(s)	29, 193, 207, 264, 333, 335
FaqI	GGGAC	1 cut(s)	285
FatI	CATG	2 cut(s)	191, 262
FauNDI	CATATG	1 cut(s)	333
FbaI	TGATCA	2 cut(s)	30, 328
Fnu4HI	GCNGC	2 cut(s)	60, 189
Fsp4HI	GCNGC	2 cut(s)	60, 189
FspBI	CTAG	2 cut(s)	147, 282
GluI	GCNGC	2 cut(s)	60, 189
Hin1II	CATG	2 cut(s)	195, 266
HinfI	GANTC	2 cut(s)	198, 337
HphI	GGTGA	1 cut(s)	323
Hpy188I	TCNGA	3 cut(s)	35, 172, 320
Hpy188III	TCNNGA	2 cut(s)	121, 263
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	1 cut(s)	54
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4IV	ACGT	1 cut(s)	65
HpyCH4V	TGCA	2 cut(s)	75, 398
HpyF3I	CTNAG	1 cut(s)	102
HpySE526I	ACGT	1 cut(s)	65
Hsp92II	CATG	2 cut(s)	195, 266
Ksp22I	TGATCA	2 cut(s)	30, 328
Kzo9I	GATC	4 cut(s)	30, 259, 328, 355
LguI	GCTCTTC	1 cut(s)	163
LpnPI	CCDG	8 cut(s)	85, 128, 168, 303, 336, 355, 395, 423
Lsp1109I	GCAGC	1 cut(s)	71
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	2 cut(s)	147, 282
MaeII	ACGT	1 cut(s)	65
MalI	GATC	4 cut(s)	32, 261, 330, 357
MboI	GATC	4 cut(s)	30, 259, 328, 355
MboII	GAAGA	7 cut(s)	98, 125, 150, 171, 244, 262, 365
MluCI	AATT	3 cut(s)	227, 373, 508
MlyI	GAGTC	1 cut(s)	207
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	3 cut(s)	73, 76, 265
MseI	TTAA	5 cut(s)	294, 372, 464, 494, 520
NdeI	CATATG	1 cut(s)	333
NdeII	GATC	4 cut(s)	30, 259, 328, 355
NlaIII	CATG	2 cut(s)	195, 266
NlaIV	GGNNCC	2 cut(s)	187, 489
NspV	TTCGAA	1 cut(s)	111
PagI	TCATGA	1 cut(s)	262
PciSI	GCTCTTC	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	337
PkrI	GCNGC	2 cut(s)	61, 190
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
PshBI	ATTAAT	1 cut(s)	372
PspN4I	GGNNCC	2 cut(s)	187, 489
PsrI	GAACNNNNNNTAC	2 cut(s)	418, 450
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SapI	GCTCTTC	1 cut(s)	163
SaqAI	TTAA	5 cut(s)	294, 372, 464, 494, 520
SatI	GCNGC	2 cut(s)	60, 189
Sau3AI	GATC	4 cut(s)	30, 259, 328, 355
ScaI	AGTACT	1 cut(s)	107
SchI	GAGTC	1 cut(s)	207
SetI	ASST	3 cut(s)	11, 40, 68
SfaNI	GCATC	1 cut(s)	163
SfuI	TTCGAA	1 cut(s)	111
Sse9I	AATT	3 cut(s)	227, 373, 508
SsiI	CCGC	1 cut(s)	189
SspMI	CTAG	2 cut(s)	147, 282
TaaI	ACNGT	1 cut(s)	425
TaiI	ACGT	1 cut(s)	68
TaqI	TCGA	2 cut(s)	111, 122
TasI	AATT	3 cut(s)	227, 373, 508
TatI	WGTACW	1 cut(s)	105
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	1 cut(s)	337
Tru1I	TTAA	5 cut(s)	294, 372, 464, 494, 520
Tru9I	TTAA	5 cut(s)	294, 372, 464, 494, 520
TseI	GCWGC	1 cut(s)	59
TspDTI	ATGAA	5 cut(s)	9, 66, 350, 419, 432
VspI	ATTAAT	1 cut(s)	372
XspI	CTAG	2 cut(s)	147, 282
ZrmI	AGTACT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.