Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009058

Physical Location & Seq

Genomic Coordinates Forward (+)

22016678 .. 22018164

Gene Structure 1487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G218700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGATGGAGAAATCTTGTAATTCATCTCTGATCAAAGCTGTTCCTTCTAAGCAAACCACATACTCTTGCACTGAGGAGGAGAGTGGTTGGACTGCTTACTTTGAAGACTTCTCAAACAACAACAACAACAACAGGGAAGGAGAAGCAGCAGCAGAGGAACAAAGTCTCTGCTCAAGTTTTGGCTGCACTTCTTCTTTGGTTTCTGATGCTGCTTCTGGTGCTGCATGGAAATTAGCTTCCCAAAACAACCAAAACCAACATGCATGCTCTAATTCCATTGGGGGCTCACCCAATAATTTTCCCAAGAAATTAACCTTCAAGAAAACAAGAACCAAAAAGATTTCTGGTGATGATTTAGAGGATACTGCTAGCTCTCCTGTTAATAGTCCCAAGATTGGTGATTTGAGACCAGTTGGTATAAATCCCAGAAAGATAGATGATCATCATATCAATATTAATTCTTTGGGTAAAGAGGGTGAGCATTTTGCGGAACTGGAGCAGGCAGATGATCATGAAAAGACTAATGATTGTTGTGGGAAAACTGACAGCACAGACTTAAAGAAAAGAGGGTTGTGTTTGGTTCCTATGTCCTTGTTAGCCAACTATCTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009888 GO:0010087 GO:0010089 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

205

Amino Acids

22.17

Weight (kDa)

5.4

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21710 AT3G21710
fragaria_vesca	FvH4_6g43420 FvH4_6g43420 FvH4_6g43420 FvH4_6g43420
malus_domestica	MD09G1107000.v1.1 MD17G1094800.v1.1
prunus_persica	Prupe.3G218700_v2.0.a1
pyrus_communis	pycom09g02940 pycom17g09130
rosa_chinensis	RchiOBHm_Chr2g0159761
rosa_laevigata	RLG00000021180
rosa_multiflora	Rmu_sc0016393.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090260
rosa_rugosa	Rorug02G0478400 Rorug02G0478500
rosa_samantha	Rh2AG545100 Rh2BG558000 Rh2CG528200 Rh2DG567400
rosa_wichuraiana	Rw2G045070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	488
AfiI	CCNNNNNNNGG	1 cut(s)	395
AgsI	TTSAA	2 cut(s)	104, 319
AluBI	AGCT	3 cut(s)	38, 236, 372
AluI	AGCT	3 cut(s)	38, 236, 372
Alw26I	GTCTC	2 cut(s)	170, 400
ApeKI	GCWGC	5 cut(s)	146, 149, 183, 209, 221
AseI	ATTAAT	1 cut(s)	456
AsuHPI	GGTGA	4 cut(s)	279, 359, 410, 488
AsuNHI	GCTAGC	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	111
BbvI	GCAGC	5 cut(s)	158, 161, 170, 196, 208
BciVI	GTATCC	1 cut(s)	355
BclI	TGATCA	3 cut(s)	30, 439, 508
BcoDI	GTCTC	2 cut(s)	170, 400
BfaI	CTAG	1 cut(s)	369
BfuI	GTATCC	1 cut(s)	355
BisI	GCNGC	5 cut(s)	147, 150, 184, 210, 222
BlsI	GCNGC	5 cut(s)	148, 151, 185, 211, 223
BmiI	GGNNCC	1 cut(s)	582
BmsI	GCATC	1 cut(s)	196
BmtI	GCTAGC	1 cut(s)	372
BpiI	GAAGAC	1 cut(s)	111
BpmI	CTGGAG	1 cut(s)	515
BpuEI	CTTGAG	1 cut(s)	157
BsaBI	GATNNNNATC	1 cut(s)	441
BsaI	GGTCTC	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	1 cut(s)	395
Bse1I	ACTGG	2 cut(s)	410, 498
Bse8I	GATNNNNATC	1 cut(s)	441
BseJI	GATNNNNATC	1 cut(s)	441
BseLI	CCNNNNNNNGG	1 cut(s)	395
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	2 cut(s)	410, 498
BseRI	GAGGAG	2 cut(s)	89, 92
BseXI	GCAGC	5 cut(s)	158, 161, 170, 196, 208
BsgI	GTGCAG	1 cut(s)	169
BslFI	GGGAC	1 cut(s)	372
BslI	CCNNNNNNNGG	1 cut(s)	395
BsmAI	GTCTC	2 cut(s)	170, 400
BsmFI	GGGAC	1 cut(s)	372
Bso31I	GGTCTC	1 cut(s)	400
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp143I	GATC	3 cut(s)	30, 439, 508
BspACI	CCGC	1 cut(s)	488
BspCNI	CTCAG	1 cut(s)	64
BspHI	TCATGA	1 cut(s)	511
BspLI	GGNNCC	1 cut(s)	582
BspOI	GCTAGC	1 cut(s)	372
BspTNI	GGTCTC	1 cut(s)	400
BsrI	ACTGG	2 cut(s)	410, 498
BssMI	GATC	3 cut(s)	30, 439, 508
BstC8I	GCNNGC	3 cut(s)	265, 370, 501
BstDEI	CTNAG	2 cut(s)	48, 72
BstKTI	GATC	3 cut(s)	33, 442, 511
BstMAI	GTCTC	2 cut(s)	170, 400
BstMBI	GATC	3 cut(s)	30, 439, 508
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNSI	RCATGY	2 cut(s)	263, 267
BstV1I	GCAGC	5 cut(s)	158, 161, 170, 196, 208
BstV2I	GAAGAC	1 cut(s)	111
BsuI	GTATCC	1 cut(s)	355
BtsIMutI	CAGTG	1 cut(s)	69
Cac8I	GCNNGC	3 cut(s)	265, 370, 501
CciI	TCATGA	1 cut(s)	511
CviAII	CATG	4 cut(s)	225, 260, 264, 512
CviJI	RGCY	6 cut(s)	38, 183, 236, 285, 372, 599
CviKI_1	RGCY	6 cut(s)	38, 183, 236, 285, 372, 599
DdeI	CTNAG	2 cut(s)	48, 72
DpnI	GATC	3 cut(s)	32, 441, 510
DpnII	GATC	3 cut(s)	30, 439, 508
Eco24I	GRGCYC	1 cut(s)	287
Eco31I	GGTCTC	1 cut(s)	400
EcoT22I	ATGCAT	1 cut(s)	265
EcoT38I	GRGCYC	1 cut(s)	287
FaeI	CATG	4 cut(s)	228, 263, 267, 515
FaiI	YATR	8 cut(s)	61, 226, 261, 265, 419, 447, 513, 587
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	4 cut(s)	224, 259, 263, 511
FbaI	TGATCA	3 cut(s)	30, 439, 508
Fnu4HI	GCNGC	5 cut(s)	147, 150, 184, 210, 222
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	5 cut(s)	147, 150, 184, 210, 222
FspBI	CTAG	1 cut(s)	369
GluI	GCNGC	5 cut(s)	147, 150, 184, 210, 222
GsuI	CTGGAG	1 cut(s)	515
Hin1II	CATG	4 cut(s)	228, 263, 267, 515
HphI	GGTGA	4 cut(s)	279, 359, 410, 488
Hpy188I	TCNGA	2 cut(s)	30, 205
Hpy188III	TCNNGA	2 cut(s)	319, 512
HpyAV	CCTTC	3 cut(s)	54, 131, 325
HpyCH4V	TGCA	4 cut(s)	69, 186, 224, 263
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	2 cut(s)	48, 72
Hsp92II	CATG	4 cut(s)	228, 263, 267, 515
Ksp22I	TGATCA	3 cut(s)	30, 439, 508
Kzo9I	GATC	3 cut(s)	30, 439, 508
LmnI	GCTCC	1 cut(s)	496
LpnPI	CCDG	8 cut(s)	118, 201, 330, 390, 423, 439, 479, 485
Lsp1109I	GCAGC	5 cut(s)	158, 161, 170, 196, 208
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	369
MalI	GATC	3 cut(s)	32, 441, 510
MboI	GATC	3 cut(s)	30, 439, 508
MboII	GAAGA	2 cut(s)	116, 183
MhlI	GDGCHC	1 cut(s)	287
MluCI	AATT	6 cut(s)	19, 230, 271, 295, 308, 457
MmeI	TCCRAC	1 cut(s)	68
MnlI	CCTC	6 cut(s)	67, 70, 148, 352, 466, 560
Mph1103I	ATGCAT	1 cut(s)	265
MseI	TTAA	5 cut(s)	311, 381, 456, 557, 613
MwoI	GCNNNNNNNGC	1 cut(s)	218
NdeII	GATC	3 cut(s)	30, 439, 508
NheI	GCTAGC	1 cut(s)	368
NlaIII	CATG	4 cut(s)	228, 263, 267, 515
NlaIV	GGNNCC	1 cut(s)	582
NsiI	ATGCAT	1 cut(s)	265
NspI	RCATGY	2 cut(s)	263, 267
PaeI	GCATGC	1 cut(s)	267
PagI	TCATGA	1 cut(s)	511
PkrI	GCNGC	5 cut(s)	148, 151, 185, 211, 223
PshBI	ATTAAT	1 cut(s)	456
PspN4I	GGNNCC	1 cut(s)	582
SaqAI	TTAA	5 cut(s)	311, 381, 456, 557, 613
SatI	GCNGC	5 cut(s)	147, 150, 184, 210, 222
Sau3AI	GATC	3 cut(s)	30, 439, 508
SduI	GDGCHC	1 cut(s)	287
SetI	ASST	4 cut(s)	40, 238, 317, 374
SfaNI	GCATC	1 cut(s)	196
SmlI	CTYRAG	1 cut(s)	172
SmoI	CTYRAG	1 cut(s)	172
SphI	GCATGC	1 cut(s)	267
Sse9I	AATT	6 cut(s)	19, 230, 271, 295, 308, 457
SsiI	CCGC	1 cut(s)	488
SspI	AATATT	1 cut(s)	454
SspMI	CTAG	1 cut(s)	369
TasI	AATT	6 cut(s)	19, 230, 271, 295, 308, 457
Tru1I	TTAA	5 cut(s)	311, 381, 456, 557, 613
Tru9I	TTAA	5 cut(s)	311, 381, 456, 557, 613
TscAI	CASTG	1 cut(s)	76
TseI	GCWGC	5 cut(s)	146, 149, 183, 209, 221
TspDTI	ATGAA	2 cut(s)	12, 528
TspRI	CASTG	1 cut(s)	76
VspI	ATTAAT	1 cut(s)	456
XceI	RCATGY	2 cut(s)	263, 267
XspI	CTAG	1 cut(s)	369
Zsp2I	ATGCAT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.