Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009058

Physical Location & Seq

Genomic Coordinates Forward (+)

76859190 .. 76871034

Gene Structure 11845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG558000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGATATGTCGACTTTTGGTTCATCGTCTATGATCAGAGCTGTTCCTTCCAAAGAAACAGCAGCAACATACTCCTGCACTGAGGAGGAAGAGAGTGGTTGGACTAAGTACTTTGAAGACTTCTCAAACAATACTAGAGCTGATCAAGGACAGACTAGTTTCTGCTCTTCTTTGGTTTCTGATGCCTCTTCTGGTGCTGCATGGAGAGTTTCGCATAACAACAGTGTGCCGAAAAAATTGAAGAAAAAACCCAAGAAGCTTGGGGATCATGATTTGGAGGATACTGCTAGTTCTCCTGTTAATAGTCCCAAGATTGGTGATTTGAGACCAGTTGATCATATGAATCCCAGAAAGATAGATGATCATCGTATCAATATTAATTCTTTGGGTGAAGAGCATTTTGCAGAAATGAAGCAGGCAGATGAAAACAGTAGTGATTGTTCTGGGAAAAATGATCAAAATACAGACCTAAAGAAAAAAGGGTTGTGTTTGCTCGATATTGTGAATTGTGATACCCATCTTGTTCTTCTCTCACTCCGACTCCGACTCCGACTCATACACATCGACTCCGACTCAAATCTTCTCCTCTGCTCCTATTGCCTTCTTCACCGTTCCTATTGGTTTGCTGGAGACAACGAAGAAGGATCCACAAATAAACAATTGGCTTTTTGGACTTCATCCCAATGTTTGTGTTTTCAGAGTTGTCAGAAGACTTTAAATATATACACAACCAGAGGCCGCAAAGAAAAATCTCTCATGTATTCCTTTAGCACCAGCCTGTGTGATTCTAGATTTGCAAATATAGGATGTGGAATTCCTTCAGAGTTAAAGTATGATTGGAAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009888 GO:0010087 GO:0010089 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

282

Amino Acids

31.72

Weight (kDa)

6.45

Isoelectric Point (pI)

50.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21710 AT3G21710
fragaria_vesca	FvH4_6g43420 FvH4_6g43420 FvH4_6g43420 FvH4_6g43420
malus_domestica	MD09G1107000.v1.1 MD17G1094800.v1.1
prunus_persica	Prupe.3G218700_v2.0.a1
pyrus_communis	pycom09g02940 pycom17g09130
rosa_chinensis	RchiOBHm_Chr2g0159761
rosa_laevigata	RLG00000021180
rosa_multiflora	Rmu_sc0016393.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090260
rosa_rugosa	Rorug02G0478400 Rorug02G0478500
rosa_samantha	Rh2AG545100 Rh2BG558000 Rh2CG528200 Rh2DG567400
rosa_wichuraiana	Rw2G045070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	11
AciI	CCGC	1 cut(s)	739
AclWI	GGATC	3 cut(s)	273, 639, 652
AcsI	RAATTY	1 cut(s)	813
AcuI	CTGAAG	1 cut(s)	804
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	1 cut(s)	314
AgsI	TTSAA	2 cut(s)	116, 241
AhlI	ACTAGT	1 cut(s)	155
AluBI	AGCT	3 cut(s)	41, 140, 259
AluI	AGCT	3 cut(s)	41, 140, 259
Alw26I	GTCTC	2 cut(s)	319, 624
AlwI	GGATC	3 cut(s)	273, 639, 652
AoxI	GGCC	1 cut(s)	736
ApeKI	GCWGC	2 cut(s)	62, 197
ApoI	RAATTY	1 cut(s)	813
AseI	ATTAAT	1 cut(s)	378
Asp700I	GAANNNNTTC	1 cut(s)	817
AsuHPI	GGTGA	3 cut(s)	329, 401, 599
BamHI	GGATCC	1 cut(s)	644
BbsI	GAAGAC	2 cut(s)	123, 716
BbvI	GCAGC	2 cut(s)	74, 184
BccI	CCATC	1 cut(s)	525
BciVI	GTATCC	1 cut(s)	274
BclI	TGATCA	5 cut(s)	33, 142, 334, 361, 454
BcoDI	GTCTC	2 cut(s)	319, 624
BcuI	ACTAGT	1 cut(s)	155
BfaI	CTAG	4 cut(s)	135, 156, 288, 789
BfuI	GTATCC	1 cut(s)	274
BisI	GCNGC	3 cut(s)	63, 198, 739
BlsI	GCNGC	3 cut(s)	64, 199, 740
BmcAI	AGTACT	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	646
BmsI	GCATC	1 cut(s)	172
BpiI	GAAGAC	2 cut(s)	123, 716
BpmI	CTGGAG	1 cut(s)	648
BsaBI	GATNNNNATC	2 cut(s)	363, 516
BsaI	GGTCTC	1 cut(s)	319
BsaXI	ACNNNNNCTCC	6 cut(s)	525, 531, 551, 555, 561, 581
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse1I	ACTGG	1 cut(s)	329
Bse8I	GATNNNNATC	2 cut(s)	363, 516
BseGI	GGATG	2 cut(s)	677, 812
BseJI	GATNNNNATC	2 cut(s)	363, 516
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	329
BseRI	GAGGAG	2 cut(s)	98, 575
BseXI	GCAGC	2 cut(s)	74, 184
BsgI	GTGCAG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	738
BslFI	GGGAC	1 cut(s)	291
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmAI	GTCTC	2 cut(s)	319, 624
BsmFI	GGGAC	1 cut(s)	291
BsnI	GGCC	1 cut(s)	738
Bso31I	GGTCTC	1 cut(s)	319
Bsp143I	GATC	7 cut(s)	33, 142, 265, 334, 361, 454, 644
BspACI	CCGC	1 cut(s)	739
BspANI	GGCC	1 cut(s)	738
BspCNI	CTCAG	1 cut(s)	73
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	646
BspPI	GGATC	3 cut(s)	273, 639, 652
BspQI	GCTCTTC	2 cut(s)	172, 387
BspTNI	GGTCTC	1 cut(s)	319
BsrI	ACTGG	1 cut(s)	329
BssMI	GATC	7 cut(s)	33, 142, 265, 334, 361, 454, 644
Bst4CI	ACNGT	3 cut(s)	224, 431, 611
Bst6I	CTCTTC	4 cut(s)	84, 172, 193, 387
BstC8I	GCNNGC	1 cut(s)	417
BstDEI	CTNAG	2 cut(s)	81, 105
BstF5I	GGATG	2 cut(s)	677, 812
BstKTI	GATC	7 cut(s)	36, 145, 268, 337, 364, 457, 647
BstMAI	GTCTC	2 cut(s)	319, 624
BstMBI	GATC	7 cut(s)	33, 142, 265, 334, 361, 454, 644
BstMWI	GCNNNNNNNGC	1 cut(s)	597
BstV1I	GCAGC	2 cut(s)	74, 184
BstV2I	GAAGAC	2 cut(s)	123, 716
BstX2I	RGATCY	1 cut(s)	644
BstYI	RGATCY	1 cut(s)	644
BsuI	GTATCC	1 cut(s)	274
BsuRI	GGCC	1 cut(s)	738
BtsCI	GGATG	2 cut(s)	677, 812
BtsIMutI	CAGTG	2 cut(s)	78, 229
Cac8I	GCNNGC	1 cut(s)	417
CciI	TCATGA	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	3 cut(s)	201, 269, 757
CviJI	RGCY	6 cut(s)	41, 140, 259, 665, 738, 777
CviKI_1	RGCY	6 cut(s)	41, 140, 259, 665, 738, 777
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	2 cut(s)	81, 105
DpnI	GATC	7 cut(s)	35, 144, 267, 336, 363, 456, 646
DpnII	GATC	7 cut(s)	33, 142, 265, 334, 361, 454, 644
DraI	TTTAAA	1 cut(s)	717
Eam1104I	CTCTTC	4 cut(s)	84, 172, 193, 387
EarI	CTCTTC	4 cut(s)	84, 172, 193, 387
Eco31I	GGTCTC	1 cut(s)	319
Eco57I	CTGAAG	1 cut(s)	804
EcoRI	GAATTC	1 cut(s)	813
FaeI	CATG	3 cut(s)	204, 272, 760
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	3 cut(s)	200, 268, 756
FauNDI	CATATG	1 cut(s)	339
FbaI	TGATCA	5 cut(s)	33, 142, 334, 361, 454
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	3 cut(s)	63, 198, 739
FokI	GGATG	2 cut(s)	664, 819
Fsp4HI	GCNGC	3 cut(s)	63, 198, 739
FspBI	CTAG	4 cut(s)	135, 156, 288, 789
GluI	GCNGC	3 cut(s)	63, 198, 739
GsuI	CTGGAG	1 cut(s)	648
HaeIII	GGCC	1 cut(s)	738
Hin1II	CATG	3 cut(s)	204, 272, 760
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	7 cut(s)	343, 540, 546, 552, 566, 572, 785
HphI	GGTGA	3 cut(s)	329, 401, 599
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	9 cut(s)	38, 181, 539, 545, 551, 571, 699, 708, 823
Hpy188III	TCNNGA	2 cut(s)	269, 789
Hpy8I	GTNNAC	1 cut(s)	12
HpyAV	CCTTC	4 cut(s)	57, 611, 635, 828
HpyCH4III	ACNGT	3 cut(s)	224, 431, 611
HpyCH4V	TGCA	4 cut(s)	78, 200, 404, 797
HpyF10VI	GCNNNNNNNGC	1 cut(s)	597
HpyF3I	CTNAG	2 cut(s)	81, 105
Hsp92II	CATG	3 cut(s)	204, 272, 760
Ksp22I	TGATCA	5 cut(s)	33, 142, 334, 361, 454
Kzo9I	GATC	7 cut(s)	33, 142, 265, 334, 361, 454, 644
LguI	GCTCTTC	2 cut(s)	172, 387
LmnI	GCTCC	1 cut(s)	596
Lsp1109I	GCAGC	2 cut(s)	74, 184
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	4 cut(s)	135, 156, 288, 789
MalI	GATC	7 cut(s)	35, 144, 267, 336, 363, 456, 646
MboI	GATC	7 cut(s)	33, 142, 265, 334, 361, 454, 644
MfeI	CAATTG	1 cut(s)	659
MflI	RGATCY	1 cut(s)	644
MluCI	AATT	6 cut(s)	236, 379, 505, 659, 813, 844
MlyI	GAGTC	5 cut(s)	534, 540, 546, 560, 566
MmeI	TCCRAC	5 cut(s)	80, 562, 568, 574, 594
MnlI	CCTC	6 cut(s)	76, 79, 196, 271, 596, 728
MroXI	GAANNNNTTC	1 cut(s)	817
MseI	TTAA	4 cut(s)	300, 378, 716, 827
MslI	CAYNNNNRTG	1 cut(s)	682
MunI	CAATTG	1 cut(s)	659
MwoI	GCNNNNNNNGC	1 cut(s)	597
NdeI	CATATG	1 cut(s)	339
NdeII	GATC	7 cut(s)	33, 142, 265, 334, 361, 454, 644
NlaIII	CATG	3 cut(s)	204, 272, 760
NlaIV	GGNNCC	1 cut(s)	646
PagI	TCATGA	1 cut(s)	268
PciSI	GCTCTTC	2 cut(s)	172, 387
PdmI	GAANNNNTTC	1 cut(s)	817
PfeI	GAWTC	2 cut(s)	343, 785
PkrI	GCNGC	3 cut(s)	64, 199, 740
PleI	GAGTC	5 cut(s)	534, 540, 546, 560, 566
PpsI	GAGTC	5 cut(s)	534, 540, 546, 560, 566
PshBI	ATTAAT	1 cut(s)	378
PspN4I	GGNNCC	1 cut(s)	646
PsrI	GAACNNNNNNTAC	2 cut(s)	424, 456
PsuI	RGATCY	1 cut(s)	644
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
RseI	CAYNNNNRTG	1 cut(s)	682
SalI	GTCGAC	1 cut(s)	10
SapI	GCTCTTC	2 cut(s)	172, 387
SaqAI	TTAA	4 cut(s)	300, 378, 716, 827
SatI	GCNGC	3 cut(s)	63, 198, 739
Sau3AI	GATC	7 cut(s)	33, 142, 265, 334, 361, 454, 644
ScaI	AGTACT	1 cut(s)	110
SchI	GAGTC	5 cut(s)	534, 540, 546, 560, 566
SetI	ASST	4 cut(s)	43, 142, 261, 471
SfaNI	GCATC	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	682
SpeI	ACTAGT	1 cut(s)	155
Sse9I	AATT	6 cut(s)	236, 379, 505, 659, 813, 844
SsiI	CCGC	1 cut(s)	739
SspI	AATATT	1 cut(s)	376
SspMI	CTAG	4 cut(s)	135, 156, 288, 789
TaaI	ACNGT	3 cut(s)	224, 431, 611
TaqI	TCGA	3 cut(s)	11, 495, 564
TasI	AATT	6 cut(s)	236, 379, 505, 659, 813, 844
TatI	WGTACW	1 cut(s)	108
TauI	GCSGC	1 cut(s)	741
TfiI	GAWTC	2 cut(s)	343, 785
Tru1I	TTAA	4 cut(s)	300, 378, 716, 827
Tru9I	TTAA	4 cut(s)	300, 378, 716, 827
TscAI	CASTG	2 cut(s)	85, 229
TseI	GCWGC	2 cut(s)	62, 197
TspDTI	ATGAA	5 cut(s)	12, 356, 425, 438, 666
TspRI	CASTG	2 cut(s)	85, 229
VspI	ATTAAT	1 cut(s)	378
XapI	RAATTY	1 cut(s)	813
XbaI	TCTAGA	1 cut(s)	788
XmiI	GTMKAC	1 cut(s)	11
XmnI	GAANNNNTTC	1 cut(s)	817
XspI	CTAG	4 cut(s)	135, 156, 288, 789
ZrmI	AGTACT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.