Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016393.1

Orthogroup ID

OG0009058

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2269

Gene Structure 2269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016393.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

attgatatcatggatatgtcgacttttggttcatcgtctatgatcagagctgttccttccaaagaaacagcagcaacatactcctgcactgaggaggaagagagtggttggactaagtactttgaagacttctcaaacaatactagagctgatcaagggcagactagtttctgctcttctttggtttctgatgcctcttctggtgctgcatggagagtttcgcataacaacagtgtgccgaaaaaattgaagaaaaaacccaagaagattggggattatgatttggaggatactgctagttctcctgttaatagtcccaagattggtgatttgagaccagttgatcatatgaatcccagaaagatagatgatcatcgtatcaatattaattctttgggtaaagagcattttgcagaaatgaagcaggcagatgaaaacagtagtgattgttctgggaaaaatgatcaaaatacagacctaaagaaaaaagggttgtgtttggttcctctaaatctgttaatgaattatcttgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009888 GO:0010087 GO:0010089 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

19.74

Weight (kDa)

5.83

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21710 AT3G21710
fragaria_vesca	FvH4_6g43420 FvH4_6g43420 FvH4_6g43420 FvH4_6g43420
malus_domestica	MD09G1107000.v1.1 MD17G1094800.v1.1
prunus_persica	Prupe.3G218700_v2.0.a1
pyrus_communis	pycom09g02940 pycom17g09130
rosa_chinensis	RchiOBHm_Chr2g0159761
rosa_laevigata	RLG00000021180
rosa_multiflora	Rmu_sc0016393.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090260
rosa_rugosa	Rorug02G0478400 Rorug02G0478500
rosa_samantha	Rh2AG545100 Rh2BG558000 Rh2CG528200 Rh2DG567400
rosa_wichuraiana	Rw2G045070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	20
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	323
AgsI	TTSAA	2 cut(s)	125, 250
AhlI	ACTAGT	1 cut(s)	164
AluBI	AGCT	2 cut(s)	50, 149
AluI	AGCT	2 cut(s)	50, 149
Alw26I	GTCTC	1 cut(s)	328
ApeKI	GCWGC	2 cut(s)	71, 206
AseI	ATTAAT	1 cut(s)	387
AsuHPI	GGTGA	1 cut(s)	338
BbsI	GAAGAC	1 cut(s)	132
BbvI	GCAGC	2 cut(s)	83, 193
BciVI	GTATCC	1 cut(s)	283
BclI	TGATCA	5 cut(s)	42, 151, 343, 370, 463
BcoDI	GTCTC	1 cut(s)	328
BcuI	ACTAGT	1 cut(s)	164
BfaI	CTAG	3 cut(s)	144, 165, 297
BfuI	GTATCC	1 cut(s)	283
BisI	GCNGC	2 cut(s)	72, 207
BlsI	GCNGC	2 cut(s)	73, 208
BmcAI	AGTACT	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	504
BmsI	GCATC	1 cut(s)	181
BpiI	GAAGAC	1 cut(s)	132
BsaBI	GATNNNNATC	1 cut(s)	372
BsaI	GGTCTC	1 cut(s)	328
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse1I	ACTGG	1 cut(s)	338
Bse8I	GATNNNNATC	1 cut(s)	372
BseJI	GATNNNNATC	1 cut(s)	372
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	338
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	2 cut(s)	83, 193
BsgI	GTGCAG	1 cut(s)	70
BslFI	GGGAC	1 cut(s)	300
BslI	CCNNNNNNNGG	1 cut(s)	323
BsmAI	GTCTC	1 cut(s)	328
BsmFI	GGGAC	1 cut(s)	300
Bso31I	GGTCTC	1 cut(s)	328
Bsp143I	GATC	5 cut(s)	42, 151, 343, 370, 463
BspCNI	CTCAG	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	504
BspQI	GCTCTTC	1 cut(s)	181
BspTNI	GGTCTC	1 cut(s)	328
BsrI	ACTGG	1 cut(s)	338
BssMI	GATC	5 cut(s)	42, 151, 343, 370, 463
Bst4CI	ACNGT	2 cut(s)	233, 440
Bst6I	CTCTTC	3 cut(s)	93, 181, 202
BstC8I	GCNNGC	1 cut(s)	426
BstDEI	CTNAG	2 cut(s)	90, 114
BstKTI	GATC	5 cut(s)	45, 154, 346, 373, 466
BstMAI	GTCTC	1 cut(s)	328
BstMBI	GATC	5 cut(s)	42, 151, 343, 370, 463
BstV1I	GCAGC	2 cut(s)	83, 193
BstV2I	GAAGAC	1 cut(s)	132
BsuI	GTATCC	1 cut(s)	283
BtsIMutI	CAGTG	2 cut(s)	87, 238
Cac8I	GCNNGC	1 cut(s)	426
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	2 cut(s)	10, 210
CviJI	RGCY	2 cut(s)	50, 149
CviKI_1	RGCY	2 cut(s)	50, 149
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	2 cut(s)	90, 114
DpnI	GATC	5 cut(s)	44, 153, 345, 372, 465
DpnII	GATC	5 cut(s)	42, 151, 343, 370, 463
Eam1104I	CTCTTC	3 cut(s)	93, 181, 202
EarI	CTCTTC	3 cut(s)	93, 181, 202
Eco31I	GGTCTC	1 cut(s)	328
Eco32I	GATATC	1 cut(s)	7
EcoRV	GATATC	1 cut(s)	7
FaeI	CATG	2 cut(s)	13, 213
FaiI	YATR	9 cut(s)	11, 17, 41, 79, 211, 225, 279, 348, 350
FaqI	GGGAC	1 cut(s)	300
FatI	CATG	2 cut(s)	9, 209
FauNDI	CATATG	1 cut(s)	348
FbaI	TGATCA	5 cut(s)	42, 151, 343, 370, 463
FblI	GTMKAC	1 cut(s)	20
Fnu4HI	GCNGC	2 cut(s)	72, 207
Fsp4HI	GCNGC	2 cut(s)	72, 207
FspBI	CTAG	3 cut(s)	144, 165, 297
GluI	GCNGC	2 cut(s)	72, 207
Hin1II	CATG	2 cut(s)	13, 213
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HinfI	GANTC	1 cut(s)	352
HphI	GGTGA	1 cut(s)	338
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	2 cut(s)	47, 190
Hpy8I	GTNNAC	1 cut(s)	21
HpyAV	CCTTC	1 cut(s)	66
HpyCH4III	ACNGT	2 cut(s)	233, 440
HpyCH4V	TGCA	3 cut(s)	87, 209, 413
HpyF3I	CTNAG	2 cut(s)	90, 114
Hsp92II	CATG	2 cut(s)	13, 213
Ksp22I	TGATCA	5 cut(s)	42, 151, 343, 370, 463
Kzo9I	GATC	5 cut(s)	42, 151, 343, 370, 463
LguI	GCTCTTC	1 cut(s)	181
LpnPI	CCDG	7 cut(s)	97, 186, 318, 351, 370, 410, 438
Lsp1109I	GCAGC	2 cut(s)	83, 193
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	3 cut(s)	144, 165, 297
MalI	GATC	5 cut(s)	44, 153, 345, 372, 465
MboI	GATC	5 cut(s)	42, 151, 343, 370, 463
MboII	GAAGA	6 cut(s)	110, 137, 168, 189, 262, 277
MluCI	AATT	3 cut(s)	245, 388, 523
MmeI	TCCRAC	1 cut(s)	89
MnlI	CCTC	5 cut(s)	85, 88, 205, 280, 516
MseI	TTAA	4 cut(s)	309, 387, 518, 535
MslI	CAYNNNNRTG	1 cut(s)	14
NdeI	CATATG	1 cut(s)	348
NdeII	GATC	5 cut(s)	42, 151, 343, 370, 463
NlaIII	CATG	2 cut(s)	13, 213
NlaIV	GGNNCC	1 cut(s)	504
PciSI	GCTCTTC	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	352
PkrI	GCNGC	2 cut(s)	73, 208
PshBI	ATTAAT	1 cut(s)	387
PspN4I	GGNNCC	1 cut(s)	504
PsrI	GAACNNNNNNTAC	2 cut(s)	433, 465
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
RseI	CAYNNNNRTG	1 cut(s)	14
SalI	GTCGAC	1 cut(s)	19
SapI	GCTCTTC	1 cut(s)	181
SaqAI	TTAA	4 cut(s)	309, 387, 518, 535
SatI	GCNGC	2 cut(s)	72, 207
Sau3AI	GATC	5 cut(s)	42, 151, 343, 370, 463
ScaI	AGTACT	1 cut(s)	119
SetI	ASST	3 cut(s)	52, 151, 480
SfaNI	GCATC	1 cut(s)	181
SmiMI	CAYNNNNRTG	1 cut(s)	14
SpeI	ACTAGT	1 cut(s)	164
Sse9I	AATT	3 cut(s)	245, 388, 523
SspI	AATATT	1 cut(s)	385
SspMI	CTAG	3 cut(s)	144, 165, 297
TaaI	ACNGT	2 cut(s)	233, 440
TaqI	TCGA	1 cut(s)	20
TasI	AATT	3 cut(s)	245, 388, 523
TatI	WGTACW	1 cut(s)	117
TfiI	GAWTC	1 cut(s)	352
Tru1I	TTAA	4 cut(s)	309, 387, 518, 535
Tru9I	TTAA	4 cut(s)	309, 387, 518, 535
TscAI	CASTG	2 cut(s)	94, 238
TseI	GCWGC	2 cut(s)	71, 206
TspDTI	ATGAA	5 cut(s)	21, 365, 434, 447, 536
TspRI	CASTG	2 cut(s)	94, 238
VspI	ATTAAT	1 cut(s)	387
XmiI	GTMKAC	1 cut(s)	20
XspI	CTAG	3 cut(s)	144, 165, 297
ZrmI	AGTACT	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.