Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0009058

Physical Location & Seq

Genomic Coordinates Reverse (-)

7998970 .. 7999860

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1094800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGAGAAGTCTAGCGATTCATCTCTGCTCAAAGCTGTTCCTTCAAAAGAAACCACATACTCATGCACTGAGGAGGAGAGTGGTTGGACTGCTTACTTTGAAGACTTCTCAAACAACAATAATAACAGAAGAGAAGAAGAAGGAGGAGGAGGACGAGGAGGAGCTCAAAGTTTTGGCTGCACCTCTTCTTTGGTTTCTGATGCTGCTTCTGGTGCTGCATGGAAATTAGTTTCCCACAACAATCAAAACCATGCAGGCTCTATTGGGGTCCCACCCAATAACATTTCCAAGAAATTAAGCTTCAAGAAAACAAGAACCAAAAAGATTTCTGGTGATGATTTGGAGGACACTGCTAGTTCTCCGGTTAATAGTCCCAAGATTGGTGATTCGAGACCAGTTGGTATAAACCCAGATAGAGATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009888 GO:0010087 GO:0010089 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

15.06

Weight (kDa)

6.12

Isoelectric Point (pI)

61.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21710 AT3G21710
fragaria_vesca	FvH4_6g43420 FvH4_6g43420 FvH4_6g43420 FvH4_6g43420
malus_domestica	MD09G1107000.v1.1 MD17G1094800.v1.1
prunus_persica	Prupe.3G218700_v2.0.a1
pyrus_communis	pycom09g02940 pycom17g09130
rosa_chinensis	RchiOBHm_Chr2g0159761
rosa_laevigata	RLG00000021180
rosa_multiflora	Rmu_sc0016393.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090260
rosa_rugosa	Rorug02G0478400 Rorug02G0478500
rosa_samantha	Rh2AG545100 Rh2BG558000 Rh2CG528200 Rh2DG567400
rosa_wichuraiana	Rw2G045070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	380
AgsI	TTSAA	3 cut(s)	45, 101, 304
AluBI	AGCT	3 cut(s)	35, 164, 300
AluI	AGCT	3 cut(s)	35, 164, 300
Alw21I	GWGCWC	1 cut(s)	166
Alw26I	GTCTC	1 cut(s)	385
ApeKI	GCWGC	3 cut(s)	177, 203, 215
AspS9I	GGNCC	1 cut(s)	268
AsuHPI	GGTGA	2 cut(s)	344, 395
AvaII	GGWCC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	3 cut(s)	164, 190, 202
BcoDI	GTCTC	1 cut(s)	385
BfaI	CTAG	2 cut(s)	12, 354
BisI	GCNGC	3 cut(s)	178, 204, 216
BlsI	GCNGC	3 cut(s)	179, 205, 217
Bme18I	GGWCC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	2 cut(s)	269, 270
BmsI	GCATC	1 cut(s)	190
BpiI	GAAGAC	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	385
BsaWI	WCCGGW	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse1I	ACTGG	1 cut(s)	395
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	395
BseRI	GAGGAG	6 cut(s)	86, 89, 159, 162, 171, 174
BseXI	GCAGC	3 cut(s)	164, 190, 202
BsgI	GTGCAG	1 cut(s)	163
BsiHKAI	GWGCWC	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	362
BslFI	GGGAC	2 cut(s)	254, 357
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmAI	GTCTC	1 cut(s)	385
BsmFI	GGGAC	2 cut(s)	254, 357
Bso31I	GGTCTC	1 cut(s)	385
Bsp1286I	GDGCHC	1 cut(s)	166
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	2 cut(s)	269, 270
BspTNI	GGTCTC	1 cut(s)	385
BsrI	ACTGG	1 cut(s)	395
Bst6I	CTCTTC	2 cut(s)	124, 190
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	1 cut(s)	69
BstMAI	GTCTC	1 cut(s)	385
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstV1I	GCAGC	3 cut(s)	164, 190, 202
BstV2I	GAAGAC	1 cut(s)	108
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	2 cut(s)	66, 348
Cac8I	GCNNGC	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	268
CviAII	CATG	3 cut(s)	63, 219, 251
CviJI	RGCY	5 cut(s)	35, 164, 177, 258, 300
CviKI_1	RGCY	5 cut(s)	35, 164, 177, 258, 300
DdeI	CTNAG	1 cut(s)	69
Eam1104I	CTCTTC	2 cut(s)	124, 190
EarI	CTCTTC	2 cut(s)	124, 190
Ecl136II	GAGCTC	1 cut(s)	164
Eco24I	GRGCYC	1 cut(s)	166
Eco31I	GGTCTC	1 cut(s)	385
Eco47I	GGWCC	1 cut(s)	268
Eco53kI	GAGCTC	1 cut(s)	164
EcoICRI	GAGCTC	1 cut(s)	164
EcoO109I	RGGNCCY	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	166
FaeI	CATG	3 cut(s)	66, 222, 254
FaiI	YATR	5 cut(s)	58, 64, 220, 252, 404
FaqI	GGGAC	2 cut(s)	254, 357
FatI	CATG	3 cut(s)	62, 218, 250
Fnu4HI	GCNGC	3 cut(s)	178, 204, 216
FriOI	GRGCYC	1 cut(s)	166
Fsp4HI	GCNGC	3 cut(s)	178, 204, 216
FspBI	CTAG	2 cut(s)	12, 354
GluI	GCNGC	3 cut(s)	178, 204, 216
HapII	CCGG	1 cut(s)	362
Hin1II	CATG	3 cut(s)	66, 222, 254
HindIII	AAGCTT	1 cut(s)	298
HinfI	GANTC	2 cut(s)	17, 386
HpaII	CCGG	1 cut(s)	362
HphI	GGTGA	2 cut(s)	344, 395
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	2 cut(s)	304, 390
HpyAV	CCTTC	2 cut(s)	51, 134
HpyCH4V	TGCA	4 cut(s)	66, 180, 218, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	1 cut(s)	69
Hsp92II	CATG	3 cut(s)	66, 222, 254
KflI	GGGWCCC	1 cut(s)	268
LmnI	GCTCC	1 cut(s)	161
LpnPI	CCDG	5 cut(s)	195, 240, 315, 375, 408
Lsp1109I	GCAGC	3 cut(s)	164, 190, 202
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	2 cut(s)	12, 354
MboII	GAAGA	5 cut(s)	113, 141, 146, 149, 177
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	2 cut(s)	224, 293
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	9 cut(s)	64, 67, 137, 140, 143, 149, 152, 193, 337
MseI	TTAA	2 cut(s)	296, 366
MslI	CAYNNNNRTG	1 cut(s)	61
MspI	CCGG	1 cut(s)	362
MwoI	GCNNNNNNNGC	1 cut(s)	212
NlaIII	CATG	3 cut(s)	66, 222, 254
NlaIV	GGNNCC	2 cut(s)	269, 270
PfeI	GAWTC	2 cut(s)	17, 386
PkrI	GCNGC	3 cut(s)	179, 205, 217
PpuMI	RGGWCCY	1 cut(s)	268
Psp124BI	GAGCTC	1 cut(s)	166
Psp5II	RGGWCCY	1 cut(s)	268
PspN4I	GGNNCC	2 cut(s)	269, 270
PspPI	GGNCC	1 cut(s)	268
PspPPI	RGGWCCY	1 cut(s)	268
RseI	CAYNNNNRTG	1 cut(s)	61
SacI	GAGCTC	1 cut(s)	166
SaqAI	TTAA	2 cut(s)	296, 366
SatI	GCNGC	3 cut(s)	178, 204, 216
Sau96I	GGNCC	1 cut(s)	268
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	4 cut(s)	37, 166, 185, 302
SfaNI	GCATC	1 cut(s)	190
SinI	GGWCC	1 cut(s)	268
SmiMI	CAYNNNNRTG	1 cut(s)	61
Sse9I	AATT	2 cut(s)	224, 293
SspMI	CTAG	2 cut(s)	12, 354
SstI	GAGCTC	1 cut(s)	166
TaqI	TCGA	1 cut(s)	389
TasI	AATT	2 cut(s)	224, 293
TfiI	GAWTC	2 cut(s)	17, 386
Tru1I	TTAA	2 cut(s)	296, 366
Tru9I	TTAA	2 cut(s)	296, 366
TscAI	CASTG	2 cut(s)	73, 355
TseI	GCWGC	3 cut(s)	177, 203, 215
TspDTI	ATGAA	1 cut(s)	9
TspRI	CASTG	2 cut(s)	73, 355
VpaK11BI	GGWCC	1 cut(s)	268
XspI	CTAG	2 cut(s)	12, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.