Rh2DG567400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0009058
Physical Location & Seq
Forward (+)
79688673 .. 79689954
1282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG567400.1

Sequence Viewer

Length: 414 bp
ATGGATATGTCGACTTTTGGTTCATCGTCTATGTTCAGAGCTGTTCCTTCCAAAGAAACAGCAGCAACATACTCCTGCACTGAGGAGGAAGAGAGTGGTTGGACTAAGTACTTTGAAGACTTCTCAAACAATACTAGAGCTGATCAAGGACAGACTAGTTTCTGCTCTTCTTTGGTTTCTGATGCCTCTTCTGGTGCTGCATGGAGAGTTTCACATAACAACAGTGTGCCGAAAAAATTGAAGAAAAAACCCAAGAAGATTGGGGATCATGATTTGGAGGATACTGCTAGTTCTCCTGTTAATAGTCCCAAGATTGGTGATTTGAGACCAGTTGATCATATGAATCCCAGAAAGATAGATGATCATCGTATCAATATTAATTCTTTGGTATATTCTTTTCTTATATATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009888 GO:0010087 GO:0010089 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.26

Weight (kDa)

6.41

Isoelectric Point (pI)

50.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 11
AclWI GGATC 1 cut(s) 273
AfaI GTAC 1 cut(s) 110
AfiI CCNNNNNNNGG 1 cut(s) 314
AgsI TTSAA 2 cut(s) 116, 241
AhlI ACTAGT 1 cut(s) 155
AluBI AGCT 2 cut(s) 41, 140
AluI AGCT 2 cut(s) 41, 140
Alw26I GTCTC 1 cut(s) 319
AlwI GGATC 1 cut(s) 273
ApeKI GCWGC 2 cut(s) 62, 197
AseI ATTAAT 1 cut(s) 378
AsuHPI GGTGA 1 cut(s) 329
BbsI GAAGAC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 74, 184
BciVI GTATCC 1 cut(s) 274
BclI TGATCA 3 cut(s) 142, 334, 361
BcoDI GTCTC 1 cut(s) 319
BcuI ACTAGT 1 cut(s) 155
BfaI CTAG 3 cut(s) 135, 156, 288
BfuI GTATCC 1 cut(s) 274
BisI GCNGC 2 cut(s) 63, 198
BlsI GCNGC 2 cut(s) 64, 199
BmcAI AGTACT 1 cut(s) 110
BmsI GCATC 1 cut(s) 172
BpiI GAAGAC 1 cut(s) 123
BsaBI GATNNNNATC 1 cut(s) 363
BsaI GGTCTC 1 cut(s) 319
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse1I ACTGG 1 cut(s) 329
Bse8I GATNNNNATC 1 cut(s) 363
BseJI GATNNNNATC 1 cut(s) 363
BseLI CCNNNNNNNGG 1 cut(s) 314
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 329
BseRI GAGGAG 1 cut(s) 98
BseXI GCAGC 2 cut(s) 74, 184
BsgI GTGCAG 1 cut(s) 61
BslFI GGGAC 1 cut(s) 291
BslI CCNNNNNNNGG 1 cut(s) 314
BsmAI GTCTC 1 cut(s) 319
BsmFI GGGAC 1 cut(s) 291
Bso31I GGTCTC 1 cut(s) 319
Bsp143I GATC 4 cut(s) 142, 265, 334, 361
BspCNI CTCAG 1 cut(s) 73
BspHI TCATGA 1 cut(s) 268
BspPI GGATC 1 cut(s) 273
BspQI GCTCTTC 1 cut(s) 172
BspTNI GGTCTC 1 cut(s) 319
BsrI ACTGG 1 cut(s) 329
BssMI GATC 4 cut(s) 142, 265, 334, 361
Bst4CI ACNGT 1 cut(s) 224
Bst6I CTCTTC 3 cut(s) 84, 172, 193
BstDEI CTNAG 2 cut(s) 81, 105
BstKTI GATC 4 cut(s) 145, 268, 337, 364
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 4 cut(s) 142, 265, 334, 361
BstV1I GCAGC 2 cut(s) 74, 184
BstV2I GAAGAC 1 cut(s) 123
BsuI GTATCC 1 cut(s) 274
BtsIMutI CAGTG 2 cut(s) 78, 229
CciI TCATGA 1 cut(s) 268
Csp6I GTAC 1 cut(s) 109
CviAII CATG 2 cut(s) 201, 269
CviJI RGCY 2 cut(s) 41, 140
CviKI_1 RGCY 2 cut(s) 41, 140
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 2 cut(s) 81, 105
DpnI GATC 4 cut(s) 144, 267, 336, 363
DpnII GATC 4 cut(s) 142, 265, 334, 361
Eam1104I CTCTTC 3 cut(s) 84, 172, 193
EarI CTCTTC 3 cut(s) 84, 172, 193
Eco31I GGTCTC 1 cut(s) 319
FaeI CATG 2 cut(s) 204, 272
FaqI GGGAC 1 cut(s) 291
FatI CATG 2 cut(s) 200, 268
FauNDI CATATG 1 cut(s) 339
FbaI TGATCA 3 cut(s) 142, 334, 361
FblI GTMKAC 1 cut(s) 11
Fnu4HI GCNGC 2 cut(s) 63, 198
Fsp4HI GCNGC 2 cut(s) 63, 198
FspBI CTAG 3 cut(s) 135, 156, 288
GluI GCNGC 2 cut(s) 63, 198
Hin1II CATG 2 cut(s) 204, 272
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HinfI GANTC 1 cut(s) 343
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 2 cut(s) 38, 181
Hpy188III TCNNGA 1 cut(s) 269
Hpy8I GTNNAC 1 cut(s) 12
HpyAV CCTTC 1 cut(s) 57
HpyCH4III ACNGT 1 cut(s) 224
HpyCH4V TGCA 2 cut(s) 78, 200
HpyF3I CTNAG 2 cut(s) 81, 105
Hsp92II CATG 2 cut(s) 204, 272
Ksp22I TGATCA 3 cut(s) 142, 334, 361
Kzo9I GATC 4 cut(s) 142, 265, 334, 361
LguI GCTCTTC 1 cut(s) 172
LpnPI CCDG 5 cut(s) 88, 177, 309, 342, 361
Lsp1109I GCAGC 2 cut(s) 74, 184
LweI GCATC 1 cut(s) 172
MaeI CTAG 3 cut(s) 135, 156, 288
MalI GATC 4 cut(s) 144, 267, 336, 363
MboI GATC 4 cut(s) 142, 265, 334, 361
MboII GAAGA 6 cut(s) 101, 128, 159, 180, 253, 268
MluCI AATT 2 cut(s) 236, 379
MmeI TCCRAC 1 cut(s) 80
MnlI CCTC 4 cut(s) 76, 79, 196, 271
MseI TTAA 3 cut(s) 300, 378, 412
NdeI CATATG 1 cut(s) 339
NdeII GATC 4 cut(s) 142, 265, 334, 361
NlaIII CATG 2 cut(s) 204, 272
PagI TCATGA 1 cut(s) 268
PciSI GCTCTTC 1 cut(s) 172
PfeI GAWTC 1 cut(s) 343
PkrI GCNGC 2 cut(s) 64, 199
PshBI ATTAAT 1 cut(s) 378
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
SalI GTCGAC 1 cut(s) 10
SapI GCTCTTC 1 cut(s) 172
SaqAI TTAA 3 cut(s) 300, 378, 412
SatI GCNGC 2 cut(s) 63, 198
Sau3AI GATC 4 cut(s) 142, 265, 334, 361
ScaI AGTACT 1 cut(s) 110
SetI ASST 2 cut(s) 43, 142
SfaNI GCATC 1 cut(s) 172
SpeI ACTAGT 1 cut(s) 155
Sse9I AATT 2 cut(s) 236, 379
SspI AATATT 1 cut(s) 376
SspMI CTAG 3 cut(s) 135, 156, 288
TaaI ACNGT 1 cut(s) 224
TaqI TCGA 1 cut(s) 11
TasI AATT 2 cut(s) 236, 379
TatI WGTACW 1 cut(s) 108
TfiI GAWTC 1 cut(s) 343
Tru1I TTAA 3 cut(s) 300, 378, 412
Tru9I TTAA 3 cut(s) 300, 378, 412
TscAI CASTG 2 cut(s) 85, 229
TseI GCWGC 2 cut(s) 62, 197
TspDTI ATGAA 2 cut(s) 12, 356
TspRI CASTG 2 cut(s) 85, 229
VspI ATTAAT 1 cut(s) 378
XmiI GTMKAC 1 cut(s) 11
XspI CTAG 3 cut(s) 135, 156, 288
ZrmI AGTACT 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.