Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0009058

Physical Location & Seq

Genomic Coordinates Reverse (-)

7760051 .. 7761387

Gene Structure 1337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1107000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGAGAAGTCTTGCAATTCATCGTTGATCAAAGCTGTTACTTCAAAAGAAACCACATACTCATGCACAGAGGAGGAGAGTGGTTGGACTGCTTACTTTGAAGACTTCTCGAACAACAATAATAAAAGAAAAGAAGAAGAAGAAAAACAGGGAGGAGGAGCGCAAAGTTTTGGCTACACCTCTTCTTTGGTTTCTGATGCTGCTTCTGGTGCTGCATGGAAATTAGCTTCCCACAACAATCAAAGCAATGAAGGCTCTATTGGGGTCCCACCCAATAATTTTCCCAGGAAATTAAGCTTCAAGAAAACAAGAACCAAAAAGATTTCTGGTGATGATTTGGAGGACACTGCTAGTTCTCCTGTTAATAGTCCCAAGATTGGTGATTTGAGACCAGTTGATATAAATCCCAGAAAGATAGACGATCATCATATGAATATGAATTCTTTGGGTAATGAGGGGACTAGTGTAGAACATTTTGCAGAGATAGAACAGGCCCATGATGAAAAAAGTAGTGATTGTACGGACTTAAAGAACAAAGGGTTGTGCTTGGTTCCCATGTCCTGGTTGGTGAACTATATTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009888 GO:0010087 GO:0010089 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

195

Amino Acids

21.31

Weight (kDa)

5.28

Isoelectric Point (pI)

52.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21710 AT3G21710
fragaria_vesca	FvH4_6g43420 FvH4_6g43420 FvH4_6g43420 FvH4_6g43420
malus_domestica	MD09G1107000.v1.1 MD17G1094800.v1.1
prunus_persica	Prupe.3G218700_v2.0.a1
pyrus_communis	pycom09g02940 pycom17g09130
rosa_chinensis	RchiOBHm_Chr2g0159761
rosa_laevigata	RLG00000021180
rosa_multiflora	Rmu_sc0016393.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090260
rosa_rugosa	Rorug02G0478400 Rorug02G0478500
rosa_samantha	Rh2AG545100 Rh2BG558000 Rh2CG528200 Rh2DG567400
rosa_wichuraiana	Rw2G045070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	561
AcsI	RAATTY	1 cut(s)	439
AfaI	GTAC	1 cut(s)	520
AfiI	CCNNNNNNNGG	2 cut(s)	377, 561
AgsI	TTSAA	3 cut(s)	45, 101, 301
AhlI	ACTAGT	1 cut(s)	461
AjnI	CCWGG	2 cut(s)	284, 560
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AluBI	AGCT	3 cut(s)	35, 227, 297
AluI	AGCT	3 cut(s)	35, 227, 297
Alw26I	GTCTC	1 cut(s)	382
AoxI	GGCC	1 cut(s)	492
ApeKI	GCWGC	2 cut(s)	200, 212
ApoI	RAATTY	1 cut(s)	439
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	2 cut(s)	265, 493
AsuHPI	GGTGA	3 cut(s)	341, 392, 580
AvaII	GGWCC	1 cut(s)	265
BbsI	GAAGAC	1 cut(s)	108
BbvI	GCAGC	2 cut(s)	187, 199
BciT130I	CCWGG	2 cut(s)	286, 562
BclI	TGATCA	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	382
BcuI	ACTAGT	1 cut(s)	461
BfaI	CTAG	2 cut(s)	351, 462
BisI	GCNGC	2 cut(s)	201, 213
BlsI	GCNGC	2 cut(s)	202, 214
Bme1390I	CCNGG	2 cut(s)	286, 562
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	2 cut(s)	265, 493
BmiI	GGNNCC	3 cut(s)	266, 267, 552
BmrFI	CCNGG	2 cut(s)	286, 562
BmsI	GCATC	1 cut(s)	187
BpiI	GAAGAC	1 cut(s)	108
BsaBI	GATNNNNATC	1 cut(s)	402
BsaI	GGTCTC	1 cut(s)	382
BsaJI	CCNNGG	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	2 cut(s)	377, 561
Bse1I	ACTGG	1 cut(s)	392
Bse3DI	GCAATG	1 cut(s)	253
Bse8I	GATNNNNATC	1 cut(s)	402
BseBI	CCWGG	2 cut(s)	286, 562
BseDI	CCNNGG	1 cut(s)	284
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	2 cut(s)	377, 561
BseMI	GCAATG	1 cut(s)	253
BseNI	ACTGG	1 cut(s)	392
BseRI	GAGGAG	4 cut(s)	86, 89, 168, 171
BseXI	GCAGC	2 cut(s)	187, 199
BshFI	GGCC	1 cut(s)	494
BslFI	GGGAC	3 cut(s)	251, 354, 472
BslI	CCNNNNNNNGG	2 cut(s)	377, 561
BsmAI	GTCTC	1 cut(s)	382
BsmFI	GGGAC	3 cut(s)	251, 354, 472
BsnI	GGCC	1 cut(s)	494
Bso31I	GGTCTC	1 cut(s)	382
Bsp143I	GATC	2 cut(s)	27, 421
BspANI	GGCC	1 cut(s)	494
BspLI	GGNNCC	3 cut(s)	266, 267, 552
BspTNI	GGTCTC	1 cut(s)	382
BsrDI	GCAATG	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	392
BssECI	CCNNGG	1 cut(s)	284
BssMI	GATC	2 cut(s)	27, 421
Bst2UI	CCWGG	2 cut(s)	286, 562
Bst6I	CTCTTC	1 cut(s)	187
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	2 cut(s)	30, 424
BstMAI	GTCTC	1 cut(s)	382
BstMBI	GATC	2 cut(s)	27, 421
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 252
BstNI	CCWGG	2 cut(s)	286, 562
BstSCI	CCNGG	2 cut(s)	284, 560
BstV1I	GCAGC	2 cut(s)	187, 199
BstV2I	GAAGAC	1 cut(s)	108
BsuRI	GGCC	1 cut(s)	494
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	345
CfoI	GCGC	1 cut(s)	163
Cfr13I	GGNCC	2 cut(s)	265, 493
Csp6I	GTAC	1 cut(s)	519
CviAII	CATG	4 cut(s)	63, 216, 497, 556
CviJI	RGCY	6 cut(s)	35, 174, 227, 255, 297, 494
CviKI_1	RGCY	6 cut(s)	35, 174, 227, 255, 297, 494
CviQI	GTAC	1 cut(s)	519
DpnI	GATC	2 cut(s)	29, 423
DpnII	GATC	2 cut(s)	27, 421
Eam1104I	CTCTTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	187
Eco31I	GGTCTC	1 cut(s)	382
Eco47I	GGWCC	1 cut(s)	265
EcoO109I	RGGNCCY	1 cut(s)	265
EcoRI	GAATTC	1 cut(s)	439
EcoRII	CCWGG	2 cut(s)	284, 560
FaeI	CATG	4 cut(s)	66, 219, 500, 559
FaqI	GGGAC	3 cut(s)	251, 354, 472
FatI	CATG	4 cut(s)	62, 215, 496, 555
FauNDI	CATATG	1 cut(s)	429
FbaI	TGATCA	1 cut(s)	27
Fnu4HI	GCNGC	2 cut(s)	201, 213
Fsp4HI	GCNGC	2 cut(s)	201, 213
FspBI	CTAG	2 cut(s)	351, 462
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	2 cut(s)	201, 213
HaeIII	GGCC	1 cut(s)	494
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	4 cut(s)	66, 219, 500, 559
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HindIII	AAGCTT	1 cut(s)	295
HphI	GGTGA	3 cut(s)	341, 392, 580
Hpy166II	GTNNAC	1 cut(s)	571
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	2 cut(s)	109, 301
Hpy8I	GTNNAC	1 cut(s)	571
HpyAV	CCTTC	1 cut(s)	245
HpyCH4V	TGCA	4 cut(s)	15, 66, 215, 479
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 252
Hsp92II	CATG	4 cut(s)	66, 219, 500, 559
HspAI	GCGC	1 cut(s)	161
KflI	GGGWCCC	1 cut(s)	265
Ksp22I	TGATCA	1 cut(s)	27
Kzo9I	GATC	2 cut(s)	27, 421
LmnI	GCTCC	1 cut(s)	158
Lsp1109I	GCAGC	2 cut(s)	187, 199
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	2 cut(s)	351, 462
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	2 cut(s)	29, 423
MboI	GATC	2 cut(s)	27, 421
MboII	GAAGA	5 cut(s)	113, 146, 149, 152, 174
MluCI	AATT	5 cut(s)	16, 221, 277, 290, 439
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	7 cut(s)	64, 67, 146, 149, 190, 334, 448
MseI	TTAA	4 cut(s)	293, 363, 527, 583
MslI	CAYNNNNRTG	1 cut(s)	61
MspR9I	CCNGG	2 cut(s)	286, 562
MvaI	CCWGG	2 cut(s)	286, 562
MwoI	GCNNNNNNNGC	2 cut(s)	209, 252
NdeI	CATATG	1 cut(s)	429
NdeII	GATC	2 cut(s)	27, 421
NlaIII	CATG	4 cut(s)	66, 219, 500, 559
NlaIV	GGNNCC	3 cut(s)	266, 267, 552
PflMI	CCANNNNNTGG	1 cut(s)	561
PkrI	GCNGC	2 cut(s)	202, 214
PpuMI	RGGWCCY	1 cut(s)	265
Psp5II	RGGWCCY	1 cut(s)	265
Psp6I	CCWGG	2 cut(s)	284, 560
PspGI	CCWGG	2 cut(s)	284, 560
PspN4I	GGNNCC	3 cut(s)	266, 267, 552
PspPI	GGNCC	2 cut(s)	265, 493
PspPPI	RGGWCCY	1 cut(s)	265
RsaI	GTAC	1 cut(s)	520
RsaNI	GTAC	1 cut(s)	519
RseI	CAYNNNNRTG	1 cut(s)	61
SaqAI	TTAA	4 cut(s)	293, 363, 527, 583
SatI	GCNGC	2 cut(s)	201, 213
Sau3AI	GATC	2 cut(s)	27, 421
Sau96I	GGNCC	2 cut(s)	265, 493
ScrFI	CCNGG	2 cut(s)	286, 562
SetI	ASST	4 cut(s)	37, 182, 229, 299
SfaNI	GCATC	1 cut(s)	187
SinI	GGWCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	61
SpeI	ACTAGT	1 cut(s)	461
Sse9I	AATT	5 cut(s)	16, 221, 277, 290, 439
SspMI	CTAG	2 cut(s)	351, 462
StyD4I	CCNGG	2 cut(s)	284, 560
TaqI	TCGA	1 cut(s)	110
TasI	AATT	5 cut(s)	16, 221, 277, 290, 439
Tru1I	TTAA	4 cut(s)	293, 363, 527, 583
Tru9I	TTAA	4 cut(s)	293, 363, 527, 583
TscAI	CASTG	1 cut(s)	352
TseI	GCWGC	2 cut(s)	200, 212
TspDTI	ATGAA	5 cut(s)	9, 264, 446, 452, 516
TspGWI	ACGGA	1 cut(s)	536
TspRI	CASTG	1 cut(s)	352
Van91I	CCANNNNNTGG	1 cut(s)	561
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	1 cut(s)	439
XcmI	CCANNNNNNNNNTGG	1 cut(s)	562
XspI	CTAG	2 cut(s)	351, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.