Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009058

Physical Location & Seq

Genomic Coordinates Reverse (-)

12037940 .. 12038953

Gene Structure 1014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00090260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGATATGTCGACTTTTGGTTCATCGTCTATGATCAGAGCTGTTCCTTCCAAACAAACAGCAGCAACATGCTCCTGCACTGAGGAGGAAGAGAGTGGTTGGACTAAGTACTTTGAAGACTTCTCAAACAATACTAGAGCTGATCAAGAACAGACTAGTTTCTGCTCTTCTCTGGTTTCTGATGCCTCTTCTGGTGCTGCATGGAGAGTTTCGCATAACAACAGTGTGCCGAAAAAATTGAAGAAAAAACCCAAGAAGATTGGGGATCATGATTTGGAGGATACTGCTAGTTCTCCTGTTAATAGTCCCAAGATTGGTGATTTGAGACCAGTTGATCATATGAATCCCAGAAAGATAGATGATCATCGTACCAATATTAATTCTTTGGGTAAAGAGCATTTTGCAGAAATGAAGCAGGCAGATGAAAACAGTAGTGATTGTTCTGGGAAAAATGATCAAAATACAGACCTAAAGAAAAAAGGGTTGTGTTTGGTTCCTCTAAATCTGTTAATGAATTATCTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009888 GO:0010087 GO:0010089 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

19.37

Weight (kDa)

6.2

Isoelectric Point (pI)

45.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21710 AT3G21710
fragaria_vesca	FvH4_6g43420 FvH4_6g43420 FvH4_6g43420 FvH4_6g43420
malus_domestica	MD09G1107000.v1.1 MD17G1094800.v1.1
prunus_persica	Prupe.3G218700_v2.0.a1
pyrus_communis	pycom09g02940 pycom17g09130
rosa_chinensis	RchiOBHm_Chr2g0159761
rosa_laevigata	RLG00000021180
rosa_multiflora	Rmu_sc0016393.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090260
rosa_rugosa	Rorug02G0478400 Rorug02G0478500
rosa_samantha	Rh2AG545100 Rh2BG558000 Rh2CG528200 Rh2DG567400
rosa_wichuraiana	Rw2G045070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	11
AclWI	GGATC	1 cut(s)	273
AfaI	GTAC	2 cut(s)	110, 370
AfiI	CCNNNNNNNGG	1 cut(s)	314
AgsI	TTSAA	2 cut(s)	116, 241
AhlI	ACTAGT	1 cut(s)	155
AluBI	AGCT	2 cut(s)	41, 140
AluI	AGCT	2 cut(s)	41, 140
Alw26I	GTCTC	1 cut(s)	319
AlwI	GGATC	1 cut(s)	273
ApeKI	GCWGC	2 cut(s)	62, 197
AseI	ATTAAT	1 cut(s)	378
AsuHPI	GGTGA	1 cut(s)	329
BbsI	GAAGAC	1 cut(s)	123
BbvI	GCAGC	2 cut(s)	74, 184
BciVI	GTATCC	1 cut(s)	274
BclI	TGATCA	5 cut(s)	33, 142, 334, 361, 454
BcoDI	GTCTC	1 cut(s)	319
BcuI	ACTAGT	1 cut(s)	155
BfaI	CTAG	3 cut(s)	135, 156, 288
BfuI	GTATCC	1 cut(s)	274
BisI	GCNGC	2 cut(s)	63, 198
BlsI	GCNGC	2 cut(s)	64, 199
BmcAI	AGTACT	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	495
BmsI	GCATC	1 cut(s)	172
BpiI	GAAGAC	1 cut(s)	123
BsaBI	GATNNNNATC	1 cut(s)	363
BsaI	GGTCTC	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse1I	ACTGG	1 cut(s)	329
Bse8I	GATNNNNATC	1 cut(s)	363
BseJI	GATNNNNATC	1 cut(s)	363
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	329
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	2 cut(s)	74, 184
BsgI	GTGCAG	1 cut(s)	61
BslFI	GGGAC	1 cut(s)	291
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmAI	GTCTC	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	291
Bso31I	GGTCTC	1 cut(s)	319
Bsp143I	GATC	6 cut(s)	33, 142, 265, 334, 361, 454
BspCNI	CTCAG	1 cut(s)	73
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	495
BspPI	GGATC	1 cut(s)	273
BspQI	GCTCTTC	1 cut(s)	172
BspTNI	GGTCTC	1 cut(s)	319
BsrI	ACTGG	1 cut(s)	329
BssMI	GATC	6 cut(s)	33, 142, 265, 334, 361, 454
Bst4CI	ACNGT	2 cut(s)	224, 431
Bst6I	CTCTTC	3 cut(s)	84, 172, 193
BstC8I	GCNNGC	1 cut(s)	417
BstDEI	CTNAG	2 cut(s)	81, 105
BstKTI	GATC	6 cut(s)	36, 145, 268, 337, 364, 457
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	6 cut(s)	33, 142, 265, 334, 361, 454
BstNSI	RCATGY	1 cut(s)	72
BstV1I	GCAGC	2 cut(s)	74, 184
BstV2I	GAAGAC	1 cut(s)	123
BsuI	GTATCC	1 cut(s)	274
BtsIMutI	CAGTG	2 cut(s)	78, 229
Cac8I	GCNNGC	1 cut(s)	417
CciI	TCATGA	1 cut(s)	268
Csp6I	GTAC	2 cut(s)	109, 369
CviAII	CATG	3 cut(s)	69, 201, 269
CviJI	RGCY	2 cut(s)	41, 140
CviKI_1	RGCY	2 cut(s)	41, 140
CviQI	GTAC	2 cut(s)	109, 369
DdeI	CTNAG	2 cut(s)	81, 105
DpnI	GATC	6 cut(s)	35, 144, 267, 336, 363, 456
DpnII	GATC	6 cut(s)	33, 142, 265, 334, 361, 454
Eam1104I	CTCTTC	3 cut(s)	84, 172, 193
EarI	CTCTTC	3 cut(s)	84, 172, 193
Eco31I	GGTCTC	1 cut(s)	319
FaeI	CATG	3 cut(s)	72, 204, 272
FaiI	YATR	8 cut(s)	8, 32, 70, 202, 216, 270, 339, 341
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	3 cut(s)	68, 200, 268
FauNDI	CATATG	1 cut(s)	339
FbaI	TGATCA	5 cut(s)	33, 142, 334, 361, 454
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	2 cut(s)	63, 198
Fsp4HI	GCNGC	2 cut(s)	63, 198
FspBI	CTAG	3 cut(s)	135, 156, 288
GluI	GCNGC	2 cut(s)	63, 198
Hin1II	CATG	3 cut(s)	72, 204, 272
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	1 cut(s)	343
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	2 cut(s)	38, 181
Hpy188III	TCNNGA	2 cut(s)	146, 269
Hpy8I	GTNNAC	1 cut(s)	12
HpyAV	CCTTC	1 cut(s)	57
HpyCH4III	ACNGT	2 cut(s)	224, 431
HpyCH4V	TGCA	3 cut(s)	78, 200, 404
HpyF3I	CTNAG	2 cut(s)	81, 105
Hsp92II	CATG	3 cut(s)	72, 204, 272
Ksp22I	TGATCA	5 cut(s)	33, 142, 334, 361, 454
Kzo9I	GATC	6 cut(s)	33, 142, 265, 334, 361, 454
LguI	GCTCTTC	1 cut(s)	172
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	8 cut(s)	88, 158, 177, 309, 342, 361, 401, 429
Lsp1109I	GCAGC	2 cut(s)	74, 184
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	3 cut(s)	135, 156, 288
MalI	GATC	6 cut(s)	35, 144, 267, 336, 363, 456
MboI	GATC	6 cut(s)	33, 142, 265, 334, 361, 454
MboII	GAAGA	6 cut(s)	101, 128, 159, 180, 253, 268
MluCI	AATT	3 cut(s)	236, 379, 514
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	5 cut(s)	76, 79, 196, 271, 507
MseI	TTAA	4 cut(s)	300, 378, 509, 526
NdeI	CATATG	1 cut(s)	339
NdeII	GATC	6 cut(s)	33, 142, 265, 334, 361, 454
NlaIII	CATG	3 cut(s)	72, 204, 272
NlaIV	GGNNCC	1 cut(s)	495
NspI	RCATGY	1 cut(s)	72
PagI	TCATGA	1 cut(s)	268
PciSI	GCTCTTC	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	343
PkrI	GCNGC	2 cut(s)	64, 199
PshBI	ATTAAT	1 cut(s)	378
PspN4I	GGNNCC	1 cut(s)	495
PsrI	GAACNNNNNNTAC	2 cut(s)	424, 456
RsaI	GTAC	2 cut(s)	110, 370
RsaNI	GTAC	2 cut(s)	109, 369
SalI	GTCGAC	1 cut(s)	10
SapI	GCTCTTC	1 cut(s)	172
SaqAI	TTAA	4 cut(s)	300, 378, 509, 526
SatI	GCNGC	2 cut(s)	63, 198
Sau3AI	GATC	6 cut(s)	33, 142, 265, 334, 361, 454
ScaI	AGTACT	1 cut(s)	110
SetI	ASST	3 cut(s)	43, 142, 471
SfaNI	GCATC	1 cut(s)	172
SpeI	ACTAGT	1 cut(s)	155
Sse9I	AATT	3 cut(s)	236, 379, 514
SspI	AATATT	1 cut(s)	376
SspMI	CTAG	3 cut(s)	135, 156, 288
TaaI	ACNGT	2 cut(s)	224, 431
TaqI	TCGA	1 cut(s)	11
TasI	AATT	3 cut(s)	236, 379, 514
TatI	WGTACW	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	343
Tru1I	TTAA	4 cut(s)	300, 378, 509, 526
Tru9I	TTAA	4 cut(s)	300, 378, 509, 526
TscAI	CASTG	2 cut(s)	85, 229
TseI	GCWGC	2 cut(s)	62, 197
TspDTI	ATGAA	5 cut(s)	12, 356, 425, 438, 527
TspRI	CASTG	2 cut(s)	85, 229
VspI	ATTAAT	1 cut(s)	378
XceI	RCATGY	1 cut(s)	72
XmiI	GTMKAC	1 cut(s)	11
XspI	CTAG	3 cut(s)	135, 156, 288
ZrmI	AGTACT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.