FvH4_6g43670

Beta-amylase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
33745645 .. 33748703
3059 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g43670.t1

Sequence Viewer

Length: 1491 bp
ATGGCAAGCACAACTCTAGGTACTCTGGGAGCGACAACTAAGCTTCATCATGGAAGGTACTTGTGCAGAGATGTACCATTCCAGAATCTACTTGGAAGTGCAGAAGCAACAAATAAAGCATGGAGGGAAAGATCAAATAAGAGTGCTTCCACATTCATCACAAGTCCTCGAGCTGTGGCATCTGAAATTTCCACCACACAAAGACAGGATGCACCTACACTCACATACAACGAGAAGATGCTCGCAAATTATGTGCCAATCTTTGTGATGCTCCCTTTGGGAGTTGTTACAATTGATAATGTTTTAGAAGACAAAGACACACTCGTGAAGCAGCTGCAAAAACTGAAGGAAGCAGGTGTTGATGGAGTAATGGTAGATGTGTGGTGGGGGATCATAGAATCAAAAGGGCCAAAACAATATGACTGGAGTGCTTATAGGAGCATGTTTCAAGCAGTTCAAGAATGTGGACTGAAATTACAAGCTATAATGTCATTTCACCAATGTGGCGGGAATATAGGAGATATTGTAACCATTCCCATTCCCCAATGGGTACTTGATATAGGAGAATTGAACCCTGATATCTTTTATACCAATCTCAAAGGTAACAGGAACCGGGAGTACCTCACTTTAGGTGTGGATAACTTGCCTCTCTTTAATGGAAGAACTGCTGTTGAGGTAAAGATGACAAATATTTCAATATCCATTGTTGAAGAATTTTCTCGGGAGAGCTCAGATATCCCTCTTATCCGGAAACTCAAGGATGGGCTTTTCCAGGAATTGGGGAATTTCAGGTATCTCAAAGCAGAGTTCAAAGAGGCTGCAACAAATGCTGGCCATCCTGAATGGGATTTGCCAGATAATGCAGGAGAATACAATGACACTCCTGAATCTACAGAGTTCTTCAAATCAAAAGGGACATACCTTACTGAGAAAGGGAAGTTCTTTTTGACTTGGTACTCTAACAAATTACTGAGCCATGGTGATCTCATCCTGGATGAAGCCAACAAAATTTTCCTGGGCTGCAAATTAAAGCTAGCAGCAAAAGTTTTGAGTGGAGGTTGGAGAGAGAACATAGAAGTTGCAGGTGAAAATGCACTTGCAAGGTACGACAGTGCGGCTTATGACCAAATTCTTTTAAATGCTAGACCAAATGGTATCAACAGAGATGGCCAACCAAAAGTAAGGATGTATGGGGTGACTTACCTCCGTCTGGTGGATGAACTTCTACAAAAAACGAATTTCGATATATTCAAGACATTTGTAAAGAAGATGCATGCTGATCAGGATTACTGTCAGGACTCAAAAAAGTACAACCACCACCTAGGTCCCTTGGAGCGTTCAAAACCAAAGTTCTCGACTGAAGATCTTCTGGAAGCAACAAAACCAGTGGAGCCATTCCCGTGGGATGAAGAAACAGATATGAGTGTCACCGGTGGTGGTGGTGGTTTACTTTCTTATTTGATAAGCAAAATCCTATCTTTATTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

497

Amino Acids

55.8

Weight (kDa)

6.01

Isoelectric Point (pI)

33.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_14 PF01373 88 - 246 1.9e-51 Glycosyl hydrolase family 14
Glyco_hydro_14 PF01373 283 - 357 1.2e-15 Glycosyl hydrolase family 14
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 344, 1073
Acc36I ACCTGC 2 cut(s) 344, 1073
AccB7I CCANNNNNTGG 1 cut(s) 778
AccIII TCCGGA 1 cut(s) 747
AciI CCGC 2 cut(s) 507, 1115
AclWI GGATC 1 cut(s) 398
AcoI YGGCCR 2 cut(s) 832, 1168
AcsI RAATTY 6 cut(s) 186, 713, 784, 1008, 1128, 1237
AcuI CTGAAG 2 cut(s) 365, 1380
AfaI GTAC 8 cut(s) 22, 59, 75, 552, 620, 956, 1106, 1310
AfiI CCNNNNNNNGG 3 cut(s) 778, 1210, 1213
AgeI ACCGGT 1 cut(s) 1430
AjnI CCWGG 3 cut(s) 771, 990, 1014
AjuI GAANNNNNNNTTGG 2 cut(s) 995, 1027
AleI CACNNNNGTG 2 cut(s) 323, 501
AluBI AGCT 6 cut(s) 43, 173, 334, 482, 729, 1033
AluI AGCT 6 cut(s) 43, 173, 334, 482, 729, 1033
Alw21I GWGCWC 1 cut(s) 731
AlwI GGATC 1 cut(s) 398
Ama87I CYCGRG 2 cut(s) 168, 720
Aor13HI TCCGGA 1 cut(s) 747
AoxI GGCC 3 cut(s) 407, 832, 1168
ApeKI GCWGC 5 cut(s) 331, 334, 818, 1020, 1037
ApoI RAATTY 6 cut(s) 186, 713, 784, 1008, 1128, 1237
AsiGI ACCGGT 1 cut(s) 1430
Asp700I GAANNNNTTC 1 cut(s) 1365
AspA2I CCTAGG 1 cut(s) 1321
AspS9I GGNCC 2 cut(s) 407, 1325
AsuC2I CCSGG 1 cut(s) 614
AsuHPI GGTGA 5 cut(s) 488, 992, 1097, 1207, 1420
AsuNHI GCTAGC 1 cut(s) 1033
AvaI CYCGRG 2 cut(s) 168, 720
AvaII GGWCC 1 cut(s) 1325
AvrII CCTAGG 1 cut(s) 1321
BaeI ACNNNNGTAYC 2 cut(s) 1096, 1129
BalI TGGCCA 2 cut(s) 834, 1170
BanII GRGCYC 1 cut(s) 731
BauI CACGAG 1 cut(s) 323
BbsI GAAGAC 1 cut(s) 315
Bbv12I GWGCWC 1 cut(s) 731
BbvI GCAGC 5 cut(s) 321, 343, 805, 1007, 1049
BccI CCATC 4 cut(s) 356, 755, 843, 1160
BciT130I CCWGG 3 cut(s) 773, 992, 1016
BclI TGATCA 1 cut(s) 1279
BcnI CCSGG 1 cut(s) 614
BfaI CTAG 4 cut(s) 17, 1034, 1143, 1322
BfmI CTRYAG 1 cut(s) 891
BfuAI ACCTGC 2 cut(s) 344, 1073
BglII AGATCT 1 cut(s) 1363
BisI GCNGC 6 cut(s) 332, 335, 819, 1021, 1038, 1116
BlnI CCTAGG 1 cut(s) 1321
BlsI GCNGC 6 cut(s) 333, 336, 820, 1022, 1039, 1117
Bme1390I CCNGG 4 cut(s) 614, 773, 992, 1016
Bme18I GGWCC 1 cut(s) 1325
BmeT110I CYCGRG 2 cut(s) 168, 720
BmgT120I GGNCC 2 cut(s) 407, 1325
BmiI GGNNCC 3 cut(s) 611, 1327, 1392
BmrFI CCNGG 4 cut(s) 614, 773, 992, 1016
BmsI GCATC 5 cut(s) 188, 199, 228, 258, 1260
BmtI GCTAGC 1 cut(s) 1037
BpiI GAAGAC 1 cut(s) 315
BpmI CTGGAG 1 cut(s) 445
BpuEI CTTGAG 1 cut(s) 740
BpuMI CCSGG 1 cut(s) 614
BsaJI CCNNGG 5 cut(s) 976, 1015, 1321, 1329, 1400
BsaWI WCCGGW 2 cut(s) 747, 1430
BsaXI ACNNNNNCTCC 4 cut(s) 357, 387, 510, 540
Bsc4I CCNNNNNNNGG 3 cut(s) 778, 1210, 1213
Bse118I RCCGGY 1 cut(s) 1430
Bse1I ACTGG 2 cut(s) 428, 1385
BseAI TCCGGA 1 cut(s) 747
BseBI CCWGG 3 cut(s) 773, 992, 1016
BseDI CCNNGG 5 cut(s) 976, 1015, 1321, 1329, 1400
BseGI GGATG 8 cut(s) 214, 766, 835, 987, 1000, 1191, 1222, 1411
BseLI CCNNNNNNNGG 3 cut(s) 778, 1210, 1213
BseMII CTCAG 3 cut(s) 744, 918, 962
BseNI ACTGG 2 cut(s) 428, 1385
BseXI GCAGC 5 cut(s) 321, 343, 805, 1007, 1049
BsgI GTGCAG 2 cut(s) 85, 120
BshFI GGCC 3 cut(s) 409, 834, 1170
BshTI ACCGGT 1 cut(s) 1430
BsiHKAI GWGCWC 1 cut(s) 731
BsiHKCI CYCGRG 2 cut(s) 168, 720
BsiSI CCGG 3 cut(s) 613, 748, 1431
BslFI GGGAC 2 cut(s) 928, 1311
BslI CCNNNNNNNGG 3 cut(s) 778, 1210, 1213
BsmFI GGGAC 2 cut(s) 928, 1311
BsnI GGCC 3 cut(s) 409, 834, 1170
BsoBI CYCGRG 2 cut(s) 168, 720
Bsp1286I GDGCHC 1 cut(s) 731
Bsp13I TCCGGA 1 cut(s) 747
Bsp143I GATC 5 cut(s) 131, 390, 982, 1279, 1363
Bsp19I CCATGG 1 cut(s) 976
BspACI CCGC 2 cut(s) 507, 1115
BspANI GGCC 3 cut(s) 409, 834, 1170
BspCNI CTCAG 3 cut(s) 743, 919, 963
BspEI TCCGGA 1 cut(s) 747
BspLI GGNNCC 3 cut(s) 611, 1327, 1392
BspMI ACCTGC 2 cut(s) 344, 1073
BspOI GCTAGC 1 cut(s) 1037
BspPI GGATC 1 cut(s) 398
BsrFI RCCGGY 1 cut(s) 1430
BsrI ACTGG 2 cut(s) 428, 1385
BssAI RCCGGY 1 cut(s) 1430
BssECI CCNNGG 5 cut(s) 976, 1015, 1321, 1329, 1400
BssMI GATC 5 cut(s) 131, 390, 982, 1279, 1363
BssSI CACGAG 1 cut(s) 323
BssT1I CCWWGG 3 cut(s) 976, 1321, 1329
Bst2BI CACGAG 1 cut(s) 323
Bst2UI CCWGG 3 cut(s) 773, 992, 1016
Bst4CI ACNGT 2 cut(s) 1112, 1292
BstAPI GCANNNNNTGC 1 cut(s) 827
BstC8I GCNNGC 5 cut(s) 7, 243, 832, 1035, 1275
BstDEI CTNAG 4 cut(s) 39, 730, 927, 971
BstDSI CCRYGG 2 cut(s) 976, 1400
BstF5I GGATG 8 cut(s) 214, 766, 835, 987, 1000, 1191, 1222, 1411
BstKTI GATC 5 cut(s) 134, 393, 985, 1282, 1366
BstMBI GATC 5 cut(s) 131, 390, 982, 1279, 1363
BstMWI GCNNNNNNNGC 1 cut(s) 827
BstNI CCWGG 3 cut(s) 773, 992, 1016
BstNSI RCATGY 2 cut(s) 445, 1277
BstSCI CCNGG 4 cut(s) 612, 771, 990, 1014
BstSFI CTRYAG 1 cut(s) 891
BstV1I GCAGC 5 cut(s) 321, 343, 805, 1007, 1049
BstV2I GAAGAC 1 cut(s) 315
BstX2I RGATCY 1 cut(s) 1363
BstXI CCANNNNNNTGG 1 cut(s) 1401
BstYI RGATCY 1 cut(s) 1363
BsuRI GGCC 3 cut(s) 409, 834, 1170
BtgI CCRYGG 2 cut(s) 976, 1400
BtsCI GGATG 8 cut(s) 214, 766, 835, 987, 1000, 1191, 1222, 1411
BtsIMutI CAGTG 2 cut(s) 1117, 1392
BveI ACCTGC 2 cut(s) 344, 1073
Cac8I GCNNGC 5 cut(s) 7, 243, 832, 1035, 1275
Cfr10I RCCGGY 1 cut(s) 1430
Cfr13I GGNCC 2 cut(s) 407, 1325
Csp6I GTAC 8 cut(s) 21, 58, 74, 551, 619, 955, 1105, 1309
CspAI ACCGGT 1 cut(s) 1430
CspCI CAANNNNNGTGG 2 cut(s) 1368, 1403
CviAII CATG 5 cut(s) 50, 120, 442, 977, 1274
CviQI GTAC 8 cut(s) 21, 58, 74, 551, 619, 955, 1105, 1309
DdeI CTNAG 4 cut(s) 39, 730, 927, 971
DpnI GATC 5 cut(s) 133, 392, 984, 1281, 1365
DpnII GATC 5 cut(s) 131, 390, 982, 1279, 1363
DraI TTTAAA 1 cut(s) 1137
EaeI YGGCCR 2 cut(s) 832, 1168
Ecl136II GAGCTC 1 cut(s) 729
Eco130I CCWWGG 3 cut(s) 976, 1321, 1329
Eco24I GRGCYC 1 cut(s) 731
Eco32I GATATC 2 cut(s) 580, 736
Eco47I GGWCC 1 cut(s) 1325
Eco53kI GAGCTC 1 cut(s) 729
Eco57I CTGAAG 2 cut(s) 365, 1380
Eco88I CYCGRG 2 cut(s) 168, 720
EcoICRI GAGCTC 1 cut(s) 729
EcoO109I RGGNCCY 1 cut(s) 1325
EcoRII CCWGG 3 cut(s) 771, 990, 1014
EcoRV GATATC 2 cut(s) 580, 736
EcoT14I CCWWGG 3 cut(s) 976, 1321, 1329
EcoT22I ATGCAT 1 cut(s) 1275
EcoT38I GRGCYC 1 cut(s) 731
ErhI CCWWGG 3 cut(s) 976, 1321, 1329
FaeI CATG 5 cut(s) 53, 123, 445, 980, 1277
FaqI GGGAC 2 cut(s) 928, 1311
FatI CATG 5 cut(s) 49, 119, 441, 976, 1273
FauI CCCGC 1 cut(s) 500
FbaI TGATCA 1 cut(s) 1279
Fnu4HI GCNGC 6 cut(s) 332, 335, 819, 1021, 1038, 1116
FokI GGATG 8 cut(s) 221, 773, 822, 974, 1007, 1198, 1229, 1418
FriOI GRGCYC 1 cut(s) 731
Fsp4HI GCNGC 6 cut(s) 332, 335, 819, 1021, 1038, 1116
FspBI CTAG 4 cut(s) 17, 1034, 1143, 1322
GluI GCNGC 6 cut(s) 332, 335, 819, 1021, 1038, 1116
GsuI CTGGAG 1 cut(s) 445
HaeIII GGCC 3 cut(s) 409, 834, 1170
HapII CCGG 3 cut(s) 613, 748, 1431
Hin1II CATG 5 cut(s) 53, 123, 445, 980, 1277
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 4 cut(s) 85, 398, 887, 1298
HpaII CCGG 3 cut(s) 613, 748, 1431
HphI GGTGA 5 cut(s) 488, 992, 1097, 1207, 1420
Hpy166II GTNNAC 2 cut(s) 467, 1448
Hpy188I TCNGA 2 cut(s) 184, 733
Hpy8I GTNNAC 2 cut(s) 467, 1448
HpyAV CCTTC 2 cut(s) 48, 340
HpyCH4III ACNGT 2 cut(s) 1112, 1292
HpyF10VI GCNNNNNNNGC 1 cut(s) 827
HpyF3I CTNAG 4 cut(s) 39, 730, 927, 971
Hsp92II CATG 5 cut(s) 53, 123, 445, 980, 1277
Kpn2I TCCGGA 1 cut(s) 747
Ksp22I TGATCA 1 cut(s) 1279
Kzo9I GATC 5 cut(s) 131, 390, 982, 1279, 1363
LmnI GCTCC 5 cut(s) 29, 276, 438, 1333, 1390
Lsp1109I GCAGC 5 cut(s) 321, 343, 805, 1007, 1049
LweI GCATC 5 cut(s) 188, 199, 228, 258, 1260
MaeI CTAG 4 cut(s) 17, 1034, 1143, 1322
MaeIII GTNAC 5 cut(s) 286, 526, 602, 1195, 1426
MalI GATC 5 cut(s) 133, 392, 984, 1281, 1365
MboI GATC 5 cut(s) 131, 390, 982, 1279, 1363
MboII GAAGA 9 cut(s) 247, 320, 672, 722, 892, 1279, 1358, 1373, 1421
MfeI CAATTG 1 cut(s) 291
MflI RGATCY 1 cut(s) 1363
MhlI GDGCHC 1 cut(s) 731
MlsI TGGCCA 2 cut(s) 834, 1170
MluNI TGGCCA 2 cut(s) 834, 1170
MlyI GAGTC 1 cut(s) 1292
MmeI TCCRAC 1 cut(s) 1040
MnlI CCTC 9 cut(s) 117, 177, 632, 657, 667, 750, 808, 1049, 1214
Mox20I TGGCCA 2 cut(s) 834, 1170
Mph1103I ATGCAT 1 cut(s) 1275
MroI TCCGGA 1 cut(s) 747
MroXI GAANNNNTTC 1 cut(s) 1365
MscI TGGCCA 2 cut(s) 834, 1170
MseI TTAA 3 cut(s) 654, 1028, 1136
MslI CAYNNNNRTG 3 cut(s) 323, 501, 1399
Msp20I TGGCCA 2 cut(s) 834, 1170
MspA1I CMGCKG 1 cut(s) 334
MspI CCGG 3 cut(s) 613, 748, 1431
MspR9I CCNGG 4 cut(s) 614, 773, 992, 1016
MunI CAATTG 1 cut(s) 291
MvaI CCWGG 3 cut(s) 773, 992, 1016
MwoI GCNNNNNNNGC 1 cut(s) 827
NciI CCSGG 1 cut(s) 614
NcoI CCATGG 1 cut(s) 976
NdeII GATC 5 cut(s) 131, 390, 982, 1279, 1363
NheI GCTAGC 1 cut(s) 1033
NlaIII CATG 5 cut(s) 53, 123, 445, 980, 1277
NlaIV GGNNCC 3 cut(s) 611, 1327, 1392
NmuCI GTSAC 2 cut(s) 1195, 1426
NsiI ATGCAT 1 cut(s) 1275
NspI RCATGY 2 cut(s) 445, 1277
OliI CACNNNNGTG 2 cut(s) 323, 501
PaeI GCATGC 1 cut(s) 1277
PaeR7I CTCGAG 1 cut(s) 168
PaqCI CACCTGC 2 cut(s) 344, 1073
PdmI GAANNNNTTC 1 cut(s) 1365
PfeI GAWTC 3 cut(s) 85, 398, 887
PflMI CCANNNNNTGG 1 cut(s) 778
PfoI TCCNGGA 2 cut(s) 771, 990
PinAI ACCGGT 1 cut(s) 1430
PkrI GCNGC 6 cut(s) 333, 336, 820, 1022, 1039, 1117
PleI GAGTC 1 cut(s) 1292
PpsI GAGTC 1 cut(s) 1292
PpuMI RGGWCCY 1 cut(s) 1325
Psp124BI GAGCTC 1 cut(s) 731
Psp5II RGGWCCY 1 cut(s) 1325
Psp6I CCWGG 3 cut(s) 771, 990, 1014
PspGI CCWGG 3 cut(s) 771, 990, 1014
PspN4I GGNNCC 3 cut(s) 611, 1327, 1392
PspPI GGNCC 2 cut(s) 407, 1325
PspPPI RGGWCCY 1 cut(s) 1325
PspXI VCTCGAGB 1 cut(s) 168
PsrI GAACNNNNNNTAC 2 cut(s) 602, 634
PsuI RGATCY 1 cut(s) 1363
PvuII CAGCTG 1 cut(s) 334
RsaI GTAC 8 cut(s) 22, 59, 75, 552, 620, 956, 1106, 1310
RsaNI GTAC 8 cut(s) 21, 58, 74, 551, 619, 955, 1105, 1309
RseI CAYNNNNRTG 3 cut(s) 323, 501, 1399
SacI GAGCTC 1 cut(s) 731
SaqAI TTAA 3 cut(s) 654, 1028, 1136
SatI GCNGC 6 cut(s) 332, 335, 819, 1021, 1038, 1116
Sau3AI GATC 5 cut(s) 131, 390, 982, 1279, 1363
Sau96I GGNCC 2 cut(s) 407, 1325
SchI GAGTC 1 cut(s) 1292
ScrFI CCNGG 4 cut(s) 614, 773, 992, 1016
SduI GDGCHC 1 cut(s) 731
SfaNI GCATC 5 cut(s) 188, 199, 228, 258, 1260
SfcI CTRYAG 1 cut(s) 891
Sfr274I CTCGAG 1 cut(s) 168
SgrAI CRCCGGYG 1 cut(s) 1430
SinI GGWCC 1 cut(s) 1325
SlaI CTCGAG 1 cut(s) 168
SmiMI CAYNNNNRTG 3 cut(s) 323, 501, 1399
SmlI CTYRAG 2 cut(s) 168, 755
SmoI CTYRAG 2 cut(s) 168, 755
SphI GCATGC 1 cut(s) 1277
SsiI CCGC 2 cut(s) 507, 1115
SspI AATATT 1 cut(s) 691
SspMI CTAG 4 cut(s) 17, 1034, 1143, 1322
SstI GAGCTC 1 cut(s) 731
StyD4I CCNGG 4 cut(s) 612, 771, 990, 1014
StyI CCWWGG 3 cut(s) 976, 1321, 1329
TaaI ACNGT 2 cut(s) 1112, 1292
TaqI TCGA 3 cut(s) 169, 1242, 1355
TatI WGTACW 1 cut(s) 1308
TauI GCSGC 1 cut(s) 1118
TfiI GAWTC 3 cut(s) 85, 398, 887
Tru1I TTAA 3 cut(s) 654, 1028, 1136
Tru9I TTAA 3 cut(s) 654, 1028, 1136
TscAI CASTG 2 cut(s) 1117, 1392
TseFI GTSAC 2 cut(s) 1195, 1426
TseI GCWGC 5 cut(s) 331, 334, 818, 1020, 1037
Tsp45I GTSAC 2 cut(s) 1195, 1426
TspDTI ATGAA 5 cut(s) 35, 145, 1011, 1233, 1422
TspGWI ACGGA 1 cut(s) 1196
TspRI CASTG 2 cut(s) 1117, 1392
Van91I CCANNNNNTGG 1 cut(s) 778
VpaK11BI GGWCC 1 cut(s) 1325
XapI RAATTY 6 cut(s) 186, 713, 784, 1008, 1128, 1237
XceI RCATGY 2 cut(s) 445, 1277
XcmI CCANNNNNNNNNTGG 1 cut(s) 89
XhoI CTCGAG 1 cut(s) 168
XmaJI CCTAGG 1 cut(s) 1321
XmnI GAANNNNTTC 1 cut(s) 1365
XspI CTAG 4 cut(s) 17, 1034, 1143, 1322
Zsp2I ATGCAT 1 cut(s) 1275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.