Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006751

Physical Location & Seq

Genomic Coordinates Reverse (-)

6693868 .. 6694749

Gene Structure 882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g08880.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGTTGTCAAGGCATCATGCAATTTTGAATTTCACATGTTTAGAGATGAGGAACTCAGAACAAAGTGCTGATGCCAAAAGTGCGCCTCAGGAACTTGTTCAGCAGGTTTTGAGTGGAGGTTGGAGAGAAAACATAGAAGTTGCTGGAGAAAATGCACTTTCTAGATACGACAGTGTGGCTTATGACCAAATCCTTCTAAATGCTAGGCCAAATGGCATCAATAAAGACGGCCAACCAAAATTAAGGATGTACGGGGTGACATACCTTCGTTTGTCTGATGAACTACTACAAAAGACGAATCTTGATACGTTCAAGATATTTGTAAAAAAGATGCATGCTGATGAGGCAAGATTACCGTCCAGACCCAGAGAAGTACAATCACCACCTAGGTCCTTTGAAGCGGTCGAAACCAGAGACTTCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

142

Amino Acids

16.12

Weight (kDa)

6.31

Isoelectric Point (pI)

64.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32290 AT4G15210 AT4G15210 AT4G15210 AT4G15210
fragaria_vesca	FvH4_6g43670
malus_domestica	MD09G1103800.v1.1 MD17G1091600.v1.1
prunus_persica	Prupe.3G221800_v2.0.a1 Prupe.3G221800_v2.0.a1
pyrus_communis	pycom09g02710 pycom17g08880
rosa_chinensis	RchiOBHm_Chr2g0160291
rosa_laevigata	RLG00000021210
rosa_multiflora	Rmu_sc0008269.1_g000002 Rmu_sc0029272.1_g000002
rosa_roxburghii	Rroxscaffold_2G00089880
rosa_rugosa	Rorug02G0482600 Rorug02G0482700 Rorug02G0482800 Rorug02G0482900
rosa_samantha	Rh2AG548100 Rh2BG561600 Rh2CG532400 Rh2DG570200
rosa_wichuraiana	Rw2G045350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	94
AciI	CCGC	1 cut(s)	401
AcoI	YGGCCR	1 cut(s)	229
AcsI	RAATTY	1 cut(s)	28
AfaI	GTAC	2 cut(s)	251, 375
AflIII	ACRYGT	1 cut(s)	35
AgsI	TTSAA	3 cut(s)	28, 313, 398
Alw26I	GTCTC	1 cut(s)	408
AoxI	GGCC	2 cut(s)	206, 229
ApoI	RAATTY	1 cut(s)	28
Asp700I	GAANNNNTTC	1 cut(s)	96
AspA2I	CCTAGG	1 cut(s)	386
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	1 cut(s)	390
AsuHPI	GGTGA	2 cut(s)	268, 372
AvaII	GGWCC	1 cut(s)	390
AvrII	CCTAGG	1 cut(s)	386
AxyI	CCTNAGG	1 cut(s)	87
BaeI	ACNNNNGTAYC	2 cut(s)	157, 190
BceAI	ACGGC	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	408
BfaI	CTAG	3 cut(s)	162, 204, 387
BfuAI	ACCTGC	1 cut(s)	94
BlnI	CCTAGG	1 cut(s)	386
Bme18I	GGWCC	1 cut(s)	390
BmgT120I	GGNCC	1 cut(s)	390
BmsI	GCATC	4 cut(s)	22, 61, 225, 321
BpmI	CTGGAG	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	386
Bse21I	CCTNAGG	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	386
BseGI	GGATG	1 cut(s)	252
BseMII	CTCAG	2 cut(s)	69, 101
Bsh1285I	CGRYCG	1 cut(s)	405
BshFI	GGCC	2 cut(s)	208, 231
BsiEI	CGRYCG	1 cut(s)	405
BsmAI	GTCTC	1 cut(s)	408
BsnI	GGCC	2 cut(s)	208, 231
BspACI	CCGC	1 cut(s)	401
BspANI	GGCC	2 cut(s)	208, 231
BspCNI	CTCAG	2 cut(s)	68, 100
BspMI	ACCTGC	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	386
BssT1I	CCWWGG	1 cut(s)	386
Bst4CI	ACNGT	2 cut(s)	173, 357
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	2 cut(s)	55, 87
BstF5I	GGATG	1 cut(s)	252
BstHHI	GCGC	1 cut(s)	85
BstMAI	GTCTC	1 cut(s)	408
BstMCI	CGRYCG	1 cut(s)	405
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 344
BstNSI	RCATGY	2 cut(s)	39, 338
Bsu36I	CCTNAGG	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	208, 231
BtsCI	GGATG	1 cut(s)	252
BtsIMutI	CAGTG	1 cut(s)	178
BveI	ACCTGC	1 cut(s)	94
Cac8I	GCNNGC	1 cut(s)	336
CfoI	GCGC	1 cut(s)	85
Cfr13I	GGNCC	1 cut(s)	390
Csp6I	GTAC	2 cut(s)	250, 374
CviAII	CATG	3 cut(s)	17, 36, 335
CviJI	RGCY	3 cut(s)	179, 208, 231
CviKI_1	RGCY	3 cut(s)	179, 208, 231
CviQI	GTAC	2 cut(s)	250, 374
DdeI	CTNAG	2 cut(s)	55, 87
EaeI	YGGCCR	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	386
Eco47I	GGWCC	1 cut(s)	390
Eco81I	CCTNAGG	1 cut(s)	87
EcoO109I	RGGNCCY	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	386
EcoT22I	ATGCAT	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	386
FaeI	CATG	3 cut(s)	20, 39, 338
FaiI	YATR	6 cut(s)	18, 37, 134, 183, 262, 336
FatI	CATG	3 cut(s)	16, 35, 334
FokI	GGATG	1 cut(s)	259
FspBI	CTAG	3 cut(s)	162, 204, 387
GlaI	GCGC	1 cut(s)	84
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	208, 231
HhaI	GCGC	1 cut(s)	85
Hin1II	CATG	3 cut(s)	20, 39, 338
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HinfI	GANTC	1 cut(s)	298
HphI	GGTGA	2 cut(s)	268, 372
Hpy188I	TCNGA	2 cut(s)	58, 277
Hpy188III	TCNNGA	5 cut(s)	89, 162, 302, 313, 360
HpyAV	CCTTC	2 cut(s)	203, 275
HpyCH4III	ACNGT	2 cut(s)	173, 357
HpyCH4IV	ACGT	1 cut(s)	308
HpyCH4V	TGCA	3 cut(s)	20, 155, 334
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 344
HpyF3I	CTNAG	2 cut(s)	55, 87
HpySE526I	ACGT	1 cut(s)	308
Hsp92II	CATG	3 cut(s)	20, 39, 338
HspAI	GCGC	1 cut(s)	83
LpnPI	CCDG	5 cut(s)	74, 89, 129, 373, 379
LweI	GCATC	4 cut(s)	22, 61, 225, 321
MaeI	CTAG	3 cut(s)	162, 204, 387
MaeII	ACGT	1 cut(s)	308
MaeIII	GTNAC	1 cut(s)	256
MluCI	AATT	3 cut(s)	21, 28, 239
MmeI	TCCRAC	1 cut(s)	101
MnlI	CCTC	4 cut(s)	42, 96, 110, 337
Mph1103I	ATGCAT	1 cut(s)	336
MroXI	GAANNNNTTC	1 cut(s)	96
MseI	TTAA	1 cut(s)	242
MslI	CAYNNNNRTG	1 cut(s)	339
MwoI	GCNNNNNNNGC	2 cut(s)	80, 344
NlaIII	CATG	3 cut(s)	20, 39, 338
NmuCI	GTSAC	1 cut(s)	256
NsiI	ATGCAT	1 cut(s)	336
NspI	RCATGY	2 cut(s)	39, 338
PaeI	GCATGC	1 cut(s)	338
PciI	ACATGT	1 cut(s)	35
PdmI	GAANNNNTTC	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	298
PpuMI	RGGWCCY	1 cut(s)	390
PscI	ACATGT	1 cut(s)	35
Psp5II	RGGWCCY	1 cut(s)	390
PspPI	GGNCC	1 cut(s)	390
PspPPI	RGGWCCY	1 cut(s)	390
RsaI	GTAC	2 cut(s)	251, 375
RsaNI	GTAC	2 cut(s)	250, 374
RseI	CAYNNNNRTG	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	242
Sau96I	GGNCC	1 cut(s)	390
SetI	ASST	6 cut(s)	108, 121, 267, 311, 388, 392
SfaNI	GCATC	4 cut(s)	22, 61, 225, 321
SinI	GGWCC	1 cut(s)	390
SmiMI	CAYNNNNRTG	1 cut(s)	339
SphI	GCATGC	1 cut(s)	338
Sse9I	AATT	3 cut(s)	21, 28, 239
SsiI	CCGC	1 cut(s)	401
SspMI	CTAG	3 cut(s)	162, 204, 387
StyI	CCWWGG	1 cut(s)	386
TaaI	ACNGT	2 cut(s)	173, 357
TaiI	ACGT	1 cut(s)	311
TaqI	TCGA	2 cut(s)	405, 420
TasI	AATT	3 cut(s)	21, 28, 239
TatI	WGTACW	1 cut(s)	373
TfiI	GAWTC	1 cut(s)	298
Tru1I	TTAA	1 cut(s)	242
Tru9I	TTAA	1 cut(s)	242
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	1 cut(s)	256
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	1 cut(s)	294
TspRI	CASTG	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	390
XapI	RAATTY	1 cut(s)	28
XbaI	TCTAGA	1 cut(s)	161
XceI	RCATGY	2 cut(s)	39, 338
XmaJI	CCTAGG	1 cut(s)	386
XmnI	GAANNNNTTC	1 cut(s)	96
XspI	CTAG	3 cut(s)	162, 204, 387
Zsp2I	ATGCAT	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.