Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007522

Physical Location & Seq

Genomic Coordinates Forward (+)

34166562 .. 34167875

Gene Structure 1314 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g44340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGTGAGAACTCCTTGCTGTGATGAAAGGGGAATGAAGAAAGGGACATGGACACCGGAGGAAGATAGGAAGCTCATAGCTTATGTTACTAGGTATGGCTGCTGGAATTGGCGCCAACTCCCCAAGTTTGCTGGGCTTTCAAGGTGCGGAAAGAGTTGCAGACTTAGGTGGCTGAATTATCTGAGGCCGAACATCAAGAGAGGAAACTACACAACTGAAGAGGAGGAAATAATAATCACACTTCATGAAAAGCTGGGGAACAAATGGTCTGCGATTGCAGCACAGCTTGAGGGAAGAACTGACAATGAGGTTAAGAATCACTGGCACACAAACCTCAAGAAACGCTTAATGATGAACAAGCACAAGCCCTCCTCAGTTTCAATCACACATGATGATCATCATCATCATGAAGAAATGGAAGTACCGAAATCATTGGATCAGCCAAGGAGTACTGCTGTTACTGATGATTTTGGAAATGCGGAAACTACTGTTGATGATCAAATTTCCCAAATTGATTTTCTTGATTACCCAGAACTGTGGTCGCCACAGCCATCATCGAGTGAGCTCTCGTCCATGACCAGCGATACTACTGGAGTTGCAATTACTGCCGCAGATGGTTTGGTTGTGGAGGACAATGCTACATCAGCTGCCATGGAGACATTCTTTGGAGATTTCAGCGATAATTTCTGGACAGAGCCATTTCTGGCTGACAATGACCCAAGTGGTTTGTATACACCCTTGATGGAGCCTGATTTTTTTTATCCGTCATTTGATGGAGATTTCTTGTACGGAGCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

267

Amino Acids

30.4

Weight (kDa)

4.99

Isoelectric Point (pI)

43.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	2.6e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	4.9e-15	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	2.9e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 114	1.6e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007522)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g44340
malus_domestica	MD09G1098600.v1.1 MD17G1086700.v1.1
prunus_persica	Prupe.3G227800_v2.0.a1
pyrus_communis	pycom09g02230 pycom17g08410
rosa_chinensis	RchiOBHm_Chr2g0161241 RchiOBHm_Chr2g0161271 RchiOBHm_Chr7g0234171
rosa_laevigata	RLG00000021270 RLG00000021274
rosa_multiflora	Rmu_co8161708.1_g000001 Rmu_sc0009869.1_g000002 Rmu_ssc0000196.1_g000010
rosa_roxburghii	Rroxscaffold_2G00088960
rosa_rugosa	Rorug02G0487200 Rorug02G0487600
rosa_samantha	Rh2AG554400 Rh2BG567700 Rh2CG538000 Rh2CG538200 Rh2DG577100 Rh7BG412400
rosa_wichuraiana	Rw2G045840 Rw2G045870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	111
AccI	GTMKAC	1 cut(s)	731
AciI	CCGC	3 cut(s)	147, 479, 609
AclWI	GGATC	1 cut(s)	444
AcsI	RAATTY	1 cut(s)	501
AcuI	CTGAAG	1 cut(s)	237
AcyI	GRCGYC	1 cut(s)	112
AfaI	GTAC	3 cut(s)	423, 451, 788
AgsI	TTSAA	2 cut(s)	141, 381
AjuI	GAANNNNNNNTTGG	2 cut(s)	501, 533
AluBI	AGCT	6 cut(s)	73, 80, 253, 286, 565, 647
AluI	AGCT	6 cut(s)	73, 80, 253, 286, 565, 647
Alw21I	GWGCWC	1 cut(s)	567
Alw26I	GTCTC	1 cut(s)	650
AlwI	GGATC	1 cut(s)	444
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	3 cut(s)	99, 278, 647
ApoI	RAATTY	1 cut(s)	501
AspLEI	GCGC	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	111
BanII	GRGCYC	1 cut(s)	567
Bbv12I	GWGCWC	1 cut(s)	567
BbvI	GCAGC	3 cut(s)	86, 290, 634
BccI	CCATC	4 cut(s)	559, 608, 736, 767
BclI	TGATCA	2 cut(s)	394, 496
BcoDI	GTCTC	1 cut(s)	650
BfaI	CTAG	1 cut(s)	90
BfoI	RGCGCY	1 cut(s)	115
BisI	GCNGC	4 cut(s)	100, 279, 609, 648
BlsI	GCNGC	4 cut(s)	101, 280, 610, 649
BmcAI	AGTACT	1 cut(s)	451
BmiI	GGNNCC	2 cut(s)	113, 747
BpmI	CTGGAG	1 cut(s)	612
BpuEI	CTTGAG	2 cut(s)	308, 320
BsaBI	GATNNNNATC	2 cut(s)	396, 399
BsaHI	GRCGYC	1 cut(s)	112
BsaJI	CCNNGG	2 cut(s)	443, 651
BsaWI	WCCGGW	1 cut(s)	55
BsaXI	ACNNNNNCTCC	2 cut(s)	353, 383
Bse1I	ACTGG	2 cut(s)	326, 595
Bse8I	GATNNNNATC	2 cut(s)	396, 399
BseDI	CCNNGG	2 cut(s)	443, 651
BseJI	GATNNNNATC	2 cut(s)	396, 399
BseMII	CTCAG	2 cut(s)	173, 387
BseNI	ACTGG	2 cut(s)	326, 595
BseRI	GAGGAG	2 cut(s)	236, 361
BseXI	GCAGC	3 cut(s)	86, 290, 634
BseYI	CCCAGC	2 cut(s)	131, 253
BshFI	GGCC	1 cut(s)	187
BshNI	GGYRCC	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	567
BsiSI	CCGG	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	58
BsmAI	GTCTC	1 cut(s)	650
BsmFI	GGGAC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	567
Bsp143I	GATC	3 cut(s)	394, 436, 496
Bsp19I	CCATGG	1 cut(s)	651
BspACI	CCGC	3 cut(s)	147, 479, 609
BspANI	GGCC	1 cut(s)	187
BspCNI	CTCAG	2 cut(s)	174, 386
BspHI	TCATGA	2 cut(s)	244, 406
BspLI	GGNNCC	2 cut(s)	113, 747
BspPI	GGATC	1 cut(s)	444
BspT107I	GGYRCC	1 cut(s)	111
BsrI	ACTGG	2 cut(s)	326, 595
BssECI	CCNNGG	2 cut(s)	443, 651
BssMI	GATC	3 cut(s)	394, 436, 496
BssNAI	GTATAC	1 cut(s)	732
BssNI	GRCGYC	1 cut(s)	112
BssT1I	CCWWGG	2 cut(s)	443, 651
Bst1107I	GTATAC	1 cut(s)	732
Bst4CI	ACNGT	2 cut(s)	490, 537
Bst6I	CTCTTC	1 cut(s)	213
BstACI	GRCGYC	1 cut(s)	112
BstAPI	GCANNNNNTGC	1 cut(s)	605
BstDEI	CTNAG	3 cut(s)	164, 182, 373
BstDSI	CCRYGG	1 cut(s)	651
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	3 cut(s)	397, 439, 499
BstMAI	GTCTC	1 cut(s)	650
BstMBI	GATC	3 cut(s)	394, 436, 496
BstMWI	GCNNNNNNNGC	3 cut(s)	278, 605, 644
BstV1I	GCAGC	3 cut(s)	86, 290, 634
BstXI	CCANNNNNNTGG	1 cut(s)	537
BstZ17I	GTATAC	1 cut(s)	732
BsuRI	GGCC	1 cut(s)	187
BtgI	CCRYGG	1 cut(s)	651
BtsIMutI	CAGTG	1 cut(s)	319
CciI	TCATGA	2 cut(s)	244, 406
CfoI	GCGC	1 cut(s)	114
Csp6I	GTAC	3 cut(s)	422, 450, 787
CviAII	CATG	7 cut(s)	48, 245, 389, 407, 574, 652, 798
CviQI	GTAC	3 cut(s)	422, 450, 787
DdeI	CTNAG	3 cut(s)	164, 182, 373
DinI	GGCGCC	1 cut(s)	113
DpnI	GATC	3 cut(s)	396, 438, 498
DpnII	GATC	3 cut(s)	394, 436, 496
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Ecl136II	GAGCTC	1 cut(s)	565
Eco130I	CCWWGG	2 cut(s)	443, 651
Eco24I	GRGCYC	1 cut(s)	567
Eco53kI	GAGCTC	1 cut(s)	565
Eco57I	CTGAAG	1 cut(s)	237
EcoICRI	GAGCTC	1 cut(s)	565
EcoT14I	CCWWGG	2 cut(s)	443, 651
EcoT38I	GRGCYC	1 cut(s)	567
EgeI	GGCGCC	1 cut(s)	113
EheI	GGCGCC	1 cut(s)	113
ErhI	CCWWGG	2 cut(s)	443, 651
FaeI	CATG	7 cut(s)	51, 248, 392, 410, 577, 655, 801
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	7 cut(s)	47, 244, 388, 406, 573, 651, 797
FbaI	TGATCA	2 cut(s)	394, 496
FblI	GTMKAC	1 cut(s)	731
Fnu4HI	GCNGC	4 cut(s)	100, 279, 609, 648
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	4 cut(s)	100, 279, 609, 648
FspBI	CTAG	1 cut(s)	90
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	4 cut(s)	100, 279, 609, 648
GsaI	CCCAGC	2 cut(s)	135, 257
GsuI	CTGGAG	1 cut(s)	612
HaeII	RGCGCY	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	187
HapII	CCGG	1 cut(s)	56
HhaI	GCGC	1 cut(s)	114
Hin1I	GRCGYC	1 cut(s)	112
Hin1II	CATG	7 cut(s)	51, 248, 392, 410, 577, 655, 801
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HinfI	GANTC	1 cut(s)	316
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	732
Hpy188I	TCNGA	1 cut(s)	183
Hpy188III	TCNNGA	6 cut(s)	196, 245, 337, 407, 521, 688
Hpy8I	GTNNAC	1 cut(s)	732
HpyCH4III	ACNGT	2 cut(s)	490, 537
HpyCH4V	TGCA	3 cut(s)	159, 278, 599
HpyF10VI	GCNNNNNNNGC	3 cut(s)	278, 605, 644
HpyF3I	CTNAG	3 cut(s)	164, 182, 373
Hsp92I	GRCGYC	1 cut(s)	112
Hsp92II	CATG	7 cut(s)	51, 248, 392, 410, 577, 655, 801
HspAI	GCGC	1 cut(s)	112
KasI	GGCGCC	1 cut(s)	111
Ksp22I	TGATCA	2 cut(s)	394, 496
Kzo9I	GATC	3 cut(s)	394, 436, 496
LmnI	GCTCC	2 cut(s)	745, 791
Lsp1109I	GCAGC	3 cut(s)	86, 290, 634
MaeI	CTAG	1 cut(s)	90
MaeIII	GTNAC	2 cut(s)	85, 457
MalI	GATC	3 cut(s)	396, 438, 498
MboI	GATC	3 cut(s)	394, 436, 496
MboII	GAAGA	5 cut(s)	49, 74, 230, 306, 422
MhlI	GDGCHC	1 cut(s)	567
MluCI	AATT	6 cut(s)	106, 175, 501, 510, 600, 682
Mly113I	GGCGCC	1 cut(s)	112
MseI	TTAA	2 cut(s)	312, 347
MslI	CAYNNNNRTG	1 cut(s)	405
MspA1I	CMGCKG	1 cut(s)	647
MspI	CCGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	3 cut(s)	278, 605, 644
NarI	GGCGCC	1 cut(s)	112
NcoI	CCATGG	1 cut(s)	651
NdeII	GATC	3 cut(s)	394, 436, 496
NlaIII	CATG	7 cut(s)	51, 248, 392, 410, 577, 655, 801
NlaIV	GGNNCC	2 cut(s)	113, 747
PagI	TCATGA	2 cut(s)	244, 406
PfeI	GAWTC	1 cut(s)	316
PkrI	GCNGC	4 cut(s)	101, 280, 610, 649
PluTI	GGCGCC	1 cut(s)	115
Psp124BI	GAGCTC	1 cut(s)	567
PspFI	CCCAGC	2 cut(s)	131, 253
PspN4I	GGNNCC	2 cut(s)	113, 747
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	3 cut(s)	423, 451, 788
RsaNI	GTAC	3 cut(s)	422, 450, 787
RseI	CAYNNNNRTG	1 cut(s)	405
SacI	GAGCTC	1 cut(s)	567
SaqAI	TTAA	2 cut(s)	312, 347
SatI	GCNGC	4 cut(s)	100, 279, 609, 648
Sau3AI	GATC	3 cut(s)	394, 436, 496
ScaI	AGTACT	1 cut(s)	451
SduI	GDGCHC	1 cut(s)	567
SfoI	GGCGCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	405
SmlI	CTYRAG	2 cut(s)	287, 335
SmoI	CTYRAG	2 cut(s)	287, 335
Sse9I	AATT	6 cut(s)	106, 175, 501, 510, 600, 682
SsiI	CCGC	3 cut(s)	147, 479, 609
SspDI	GGCGCC	1 cut(s)	111
SspMI	CTAG	1 cut(s)	90
SstI	GAGCTC	1 cut(s)	567
StyI	CCWWGG	2 cut(s)	443, 651
TaaI	ACNGT	2 cut(s)	490, 537
TaqI	TCGA	1 cut(s)	557
TasI	AATT	6 cut(s)	106, 175, 501, 510, 600, 682
TatI	WGTACW	1 cut(s)	449
TauI	GCSGC	1 cut(s)	611
TfiI	GAWTC	1 cut(s)	316
Tru1I	TTAA	2 cut(s)	312, 347
Tru9I	TTAA	2 cut(s)	312, 347
TscAI	CASTG	1 cut(s)	326
TseI	GCWGC	3 cut(s)	99, 278, 647
TspDTI	ATGAA	6 cut(s)	39, 50, 233, 261, 368, 423
TspGWI	ACGGA	1 cut(s)	753
TspRI	CASTG	1 cut(s)	326
XapI	RAATTY	1 cut(s)	501
XmiI	GTMKAC	1 cut(s)	731
XspI	CTAG	1 cut(s)	90
ZrmI	AGTACT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.