Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007522

Physical Location & Seq

Genomic Coordinates Forward (+)

22696089 .. 22697287

Gene Structure 1199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G227800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGTTAGAACTCCTTGCCGTGATGAGAATGGGATGAAGAAAGGTACATGGACACCGGAGGAAGACAGGAAGCTCATAGCTTATGTCACTAGGTATGGCTGCTGGAATTGGCGCCAGCTTCCCAGGTTTGCAGGTCTGTCAAGGTGTGGGAAGAGCTGCAGACTGCGGTGGATGAATTATTTGAGGCCAAACATCAAGAGAGGAAACTACAGTCAAGAGGAAGAGGAAACTATCATCAAATTACACCAGCAGTTGGGCAATAGATGGTCAGCTATAGCGGCCCAGCTACCAGGAAGAACAGACAATGAGATAAAAAATCACTGGCATACAAACCTCAAGAAACGCATGAACAATAAACACTACAAATCATCTTCATCATCATCATCATCATCATCATCATCATCATCATCAGTCACACAAACTGATGATCAAGAAACACCCAATTGCTCAGGCCTTGTAGAGCTAGCCGTCGATCAGCTAACTAAGAGTGCTACAATTTTACCAAATGCAGATGAAACAGCTGATCATCTTCAAGTGCCCCAAACTGATCATGATCATCTTGATAATATCTTCCAACTGTCGTCGCCGCAACCCTCGTCGAGTGAAGTCTCGTCCTTGACCACAGACAATGCCCCGGTTGTTTTAAGCAGCATGAATAATGATGATTGGGTTAATTATGTGGAAGAGGACAATGTTATTAGCTCCATGGAAGCATATGCAGATGTTCAGTTCGGCAATGATTTCTGGACCGAGCCATTTTTGGCTGATACCTCCTACATCCCGTGTGGGCTTTTGACTCCCTCCATGGATTCCGAGTTTTTCTATCCACTGTTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

280

Amino Acids

31.71

Weight (kDa)

5.11

Isoelectric Point (pI)

59.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007522)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g44340
malus_domestica	MD09G1098600.v1.1 MD17G1086700.v1.1
prunus_persica	Prupe.3G227800_v2.0.a1
pyrus_communis	pycom09g02230 pycom17g08410
rosa_chinensis	RchiOBHm_Chr2g0161241 RchiOBHm_Chr2g0161271 RchiOBHm_Chr7g0234171
rosa_laevigata	RLG00000021270 RLG00000021274
rosa_multiflora	Rmu_co8161708.1_g000001 Rmu_sc0009869.1_g000002 Rmu_ssc0000196.1_g000010
rosa_roxburghii	Rroxscaffold_2G00088960
rosa_rugosa	Rorug02G0487200 Rorug02G0487600
rosa_samantha	Rh2AG554400 Rh2BG567700 Rh2CG538000 Rh2CG538200 Rh2DG577100 Rh7BG412400
rosa_wichuraiana	Rw2G045840 Rw2G045870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	122
AccB1I	GGYRCC	1 cut(s)	111
AccB7I	CCANNNNNTGG	1 cut(s)	253
AciI	CCGC	3 cut(s)	166, 278, 587
AcyI	GRCGYC	1 cut(s)	112
AfaI	GTAC	1 cut(s)	46
AfiI	CCNNNNNNNGG	1 cut(s)	253
AgsI	TTSAA	1 cut(s)	533
AjnI	CCWGG	2 cut(s)	122, 289
Alw26I	GTCTC	1 cut(s)	613
AoxI	GGCC	3 cut(s)	185, 279, 451
ApeKI	GCWGC	3 cut(s)	99, 156, 648
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	2 cut(s)	280, 747
AsuC2I	CCSGG	1 cut(s)	635
AsuNHI	GCTAGC	1 cut(s)	463
AvaII	GGWCC	1 cut(s)	747
BaeGI	GKGCMC	1 cut(s)	540
BanI	GGYRCC	1 cut(s)	111
BbsI	GAAGAC	1 cut(s)	69
BbvI	GCAGC	3 cut(s)	86, 143, 660
BccI	CCATC	1 cut(s)	258
BceAI	ACGGC	2 cut(s)	3, 452
BciT130I	CCWGG	2 cut(s)	124, 291
BclI	TGATCA	4 cut(s)	427, 523, 547, 553
BcnI	CCSGG	1 cut(s)	635
BcoDI	GTCTC	1 cut(s)	613
BfaI	CTAG	2 cut(s)	90, 464
BfmI	CTRYAG	3 cut(s)	157, 208, 273
BfoI	RGCGCY	1 cut(s)	115
BfuAI	ACCTGC	1 cut(s)	122
BisI	GCNGC	5 cut(s)	100, 157, 279, 587, 649
BlsI	GCNGC	5 cut(s)	101, 158, 280, 588, 650
Bme1390I	CCNGG	3 cut(s)	124, 291, 635
Bme18I	GGWCC	1 cut(s)	747
BmgT120I	GGNCC	2 cut(s)	280, 747
BmiI	GGNNCC	1 cut(s)	113
BmrFI	CCNGG	3 cut(s)	124, 291, 635
BmtI	GCTAGC	1 cut(s)	467
BpiI	GAAGAC	1 cut(s)	69
Bpu10I	CCTNAGC	1 cut(s)	448
BpuEI	CTTGAG	1 cut(s)	320
BpuMI	CCSGG	1 cut(s)	635
BsaBI	GATNNNNATC	1 cut(s)	552
BsaHI	GRCGYC	1 cut(s)	112
BsaJI	CCNNGG	4 cut(s)	122, 633, 705, 804
BsaWI	WCCGGW	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse1I	ACTGG	1 cut(s)	326
Bse3DI	GCAATG	1 cut(s)	742
Bse8I	GATNNNNATC	1 cut(s)	552
BseBI	CCWGG	2 cut(s)	124, 291
BseDI	CCNNGG	4 cut(s)	122, 633, 705, 804
BseGI	GGATG	3 cut(s)	39, 177, 777
BseJI	GATNNNNATC	1 cut(s)	552
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseMI	GCAATG	1 cut(s)	742
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	1 cut(s)	326
BseSI	GKGCMC	1 cut(s)	540
BseXI	GCAGC	3 cut(s)	86, 143, 660
BseYI	CCCAGC	1 cut(s)	282
BshFI	GGCC	3 cut(s)	187, 281, 453
BshNI	GGYRCC	1 cut(s)	111
BsiSI	CCGG	2 cut(s)	56, 635
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmAI	GTCTC	1 cut(s)	613
BsnI	GGCC	3 cut(s)	187, 281, 453
Bsp1286I	GDGCHC	1 cut(s)	540
Bsp143I	GATC	5 cut(s)	427, 472, 523, 547, 553
Bsp19I	CCATGG	2 cut(s)	705, 804
BspACI	CCGC	3 cut(s)	166, 278, 587
BspANI	GGCC	3 cut(s)	187, 281, 453
BspCNI	CTCAG	1 cut(s)	461
BspHI	TCATGA	1 cut(s)	550
BspLI	GGNNCC	1 cut(s)	113
BspMAI	CTGCAG	1 cut(s)	161
BspMI	ACCTGC	1 cut(s)	122
BspOI	GCTAGC	1 cut(s)	467
BspQI	GCTCTTC	1 cut(s)	146
BspT107I	GGYRCC	1 cut(s)	111
BsrDI	GCAATG	1 cut(s)	742
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	4 cut(s)	122, 633, 705, 804
BssMI	GATC	5 cut(s)	427, 472, 523, 547, 553
BssNI	GRCGYC	1 cut(s)	112
BssT1I	CCWWGG	2 cut(s)	705, 804
Bst2UI	CCWGG	2 cut(s)	124, 291
Bst4CI	ACNGT	3 cut(s)	212, 579, 831
Bst6I	CTCTTC	3 cut(s)	146, 216, 678
BstACI	GRCGYC	1 cut(s)	112
BstC8I	GCNNGC	2 cut(s)	116, 465
BstDEI	CTNAG	2 cut(s)	448, 483
BstDSI	CCRYGG	2 cut(s)	705, 804
BstF5I	GGATG	3 cut(s)	39, 177, 777
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	5 cut(s)	430, 475, 526, 550, 556
BstMAI	GTCTC	1 cut(s)	613
BstMBI	GATC	5 cut(s)	427, 472, 523, 547, 553
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNI	CCWGG	2 cut(s)	124, 291
BstSCI	CCNGG	3 cut(s)	122, 289, 633
BstSFI	CTRYAG	3 cut(s)	157, 208, 273
BstSLI	GKGCMC	1 cut(s)	540
BstV1I	GCAGC	3 cut(s)	86, 143, 660
BstV2I	GAAGAC	1 cut(s)	69
BsuRI	GGCC	3 cut(s)	187, 281, 453
BtgI	CCRYGG	2 cut(s)	705, 804
BtsCI	GGATG	3 cut(s)	39, 177, 777
BtsIMutI	CAGTG	2 cut(s)	319, 827
BveI	ACCTGC	1 cut(s)	122
Cac8I	GCNNGC	2 cut(s)	116, 465
CciI	TCATGA	1 cut(s)	550
CfoI	GCGC	1 cut(s)	114
Cfr13I	GGNCC	2 cut(s)	280, 747
Csp6I	GTAC	1 cut(s)	45
CviAII	CATG	6 cut(s)	48, 346, 551, 652, 706, 805
CviQI	GTAC	1 cut(s)	45
DdeI	CTNAG	2 cut(s)	448, 483
DinI	GGCGCC	1 cut(s)	113
DpnI	GATC	5 cut(s)	429, 474, 525, 549, 555
DpnII	GATC	5 cut(s)	427, 472, 523, 547, 553
Eam1104I	CTCTTC	3 cut(s)	146, 216, 678
EarI	CTCTTC	3 cut(s)	146, 216, 678
Eco130I	CCWWGG	2 cut(s)	705, 804
Eco147I	AGGCCT	1 cut(s)	453
Eco47I	GGWCC	1 cut(s)	747
EcoRII	CCWGG	2 cut(s)	122, 289
EcoT14I	CCWWGG	2 cut(s)	705, 804
EgeI	GGCGCC	1 cut(s)	113
EheI	GGCGCC	1 cut(s)	113
ErhI	CCWWGG	2 cut(s)	705, 804
FaeI	CATG	6 cut(s)	51, 349, 554, 655, 709, 808
FatI	CATG	6 cut(s)	47, 345, 550, 651, 705, 804
FauNDI	CATATG	1 cut(s)	715
FbaI	TGATCA	4 cut(s)	427, 523, 547, 553
Fnu4HI	GCNGC	5 cut(s)	100, 157, 279, 587, 649
FokI	GGATG	3 cut(s)	46, 184, 764
Fsp4HI	GCNGC	5 cut(s)	100, 157, 279, 587, 649
FspBI	CTAG	2 cut(s)	90, 464
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	5 cut(s)	100, 157, 279, 587, 649
GsaI	CCCAGC	1 cut(s)	286
HaeII	RGCGCY	1 cut(s)	115
HaeIII	GGCC	3 cut(s)	187, 281, 453
HapII	CCGG	2 cut(s)	56, 635
HhaI	GCGC	1 cut(s)	114
Hin1I	GRCGYC	1 cut(s)	112
Hin1II	CATG	6 cut(s)	51, 349, 554, 655, 709, 808
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HinfI	GANTC	2 cut(s)	796, 809
HpaII	CCGG	2 cut(s)	56, 635
Hpy188I	TCNGA	1 cut(s)	814
Hpy188III	TCNNGA	7 cut(s)	196, 215, 337, 431, 551, 560, 745
Hpy99I	CGWCG	3 cut(s)	473, 586, 601
HpyCH4III	ACNGT	3 cut(s)	212, 579, 831
HpyCH4V	TGCA	4 cut(s)	131, 159, 509, 719
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	2 cut(s)	448, 483
Hsp92I	GRCGYC	1 cut(s)	112
Hsp92II	CATG	6 cut(s)	51, 349, 554, 655, 709, 808
HspAI	GCGC	1 cut(s)	112
KasI	GGCGCC	1 cut(s)	111
Ksp22I	TGATCA	4 cut(s)	427, 523, 547, 553
Kzo9I	GATC	5 cut(s)	427, 472, 523, 547, 553
LguI	GCTCTTC	1 cut(s)	146
LmnI	GCTCC	1 cut(s)	707
Lsp1109I	GCAGC	3 cut(s)	86, 143, 660
MaeI	CTAG	2 cut(s)	90, 464
MaeIII	GTNAC	2 cut(s)	85, 412
MalI	GATC	5 cut(s)	429, 474, 525, 549, 555
MboI	GATC	5 cut(s)	427, 472, 523, 547, 553
MboII	GAAGA	9 cut(s)	49, 74, 163, 233, 306, 363, 521, 562, 695
MfeI	CAATTG	1 cut(s)	442
MhlI	GDGCHC	1 cut(s)	540
MluCI	AATT	6 cut(s)	106, 175, 239, 442, 495, 673
Mly113I	GGCGCC	1 cut(s)	112
MlyI	GAGTC	1 cut(s)	790
MmeI	TCCRAC	1 cut(s)	598
MseI	TTAA	2 cut(s)	644, 672
MspA1I	CMGCKG	1 cut(s)	521
MspI	CCGG	2 cut(s)	56, 635
MspR9I	CCNGG	3 cut(s)	124, 291, 635
MunI	CAATTG	1 cut(s)	442
MvaI	CCWGG	2 cut(s)	124, 291
MwoI	GCNNNNNNNGC	1 cut(s)	278
NarI	GGCGCC	1 cut(s)	112
NciI	CCSGG	1 cut(s)	635
NcoI	CCATGG	2 cut(s)	705, 804
NdeI	CATATG	1 cut(s)	715
NdeII	GATC	5 cut(s)	427, 472, 523, 547, 553
NheI	GCTAGC	1 cut(s)	463
NlaIII	CATG	6 cut(s)	51, 349, 554, 655, 709, 808
NlaIV	GGNNCC	1 cut(s)	113
NmuCI	GTSAC	2 cut(s)	85, 412
PagI	TCATGA	1 cut(s)	550
PceI	AGGCCT	1 cut(s)	453
PciSI	GCTCTTC	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	809
PflMI	CCANNNNNTGG	1 cut(s)	253
PkrI	GCNGC	5 cut(s)	101, 158, 280, 588, 650
PleI	GAGTC	1 cut(s)	790
PluTI	GGCGCC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	790
Psp6I	CCWGG	2 cut(s)	122, 289
PspFI	CCCAGC	1 cut(s)	282
PspGI	CCWGG	2 cut(s)	122, 289
PspN4I	GGNNCC	1 cut(s)	113
PspPI	GGNCC	2 cut(s)	280, 747
PstI	CTGCAG	1 cut(s)	161
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
SapI	GCTCTTC	1 cut(s)	146
SaqAI	TTAA	2 cut(s)	644, 672
SatI	GCNGC	5 cut(s)	100, 157, 279, 587, 649
Sau3AI	GATC	5 cut(s)	427, 472, 523, 547, 553
Sau96I	GGNCC	2 cut(s)	280, 747
SchI	GAGTC	1 cut(s)	790
ScrFI	CCNGG	3 cut(s)	124, 291, 635
SduI	GDGCHC	1 cut(s)	540
SfcI	CTRYAG	3 cut(s)	157, 208, 273
SfoI	GGCGCC	1 cut(s)	113
SinI	GGWCC	1 cut(s)	747
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	6 cut(s)	106, 175, 239, 442, 495, 673
SseBI	AGGCCT	1 cut(s)	453
SsiI	CCGC	3 cut(s)	166, 278, 587
SspDI	GGCGCC	1 cut(s)	111
SspMI	CTAG	2 cut(s)	90, 464
StuI	AGGCCT	1 cut(s)	453
StyD4I	CCNGG	3 cut(s)	122, 289, 633
StyI	CCWWGG	2 cut(s)	705, 804
TaaI	ACNGT	3 cut(s)	212, 579, 831
TaqI	TCGA	2 cut(s)	471, 599
TaqII	GACCGA	1 cut(s)	764
TasI	AATT	6 cut(s)	106, 175, 239, 442, 495, 673
TauI	GCSGC	2 cut(s)	281, 589
TfiI	GAWTC	1 cut(s)	809
Tru1I	TTAA	2 cut(s)	644, 672
Tru9I	TTAA	2 cut(s)	644, 672
TscAI	CASTG	2 cut(s)	326, 834
TseFI	GTSAC	2 cut(s)	85, 412
TseI	GCWGC	3 cut(s)	99, 156, 648
Tsp45I	GTSAC	2 cut(s)	85, 412
TspDTI	ATGAA	6 cut(s)	50, 188, 362, 363, 528, 668
TspRI	CASTG	2 cut(s)	326, 834
Van91I	CCANNNNNTGG	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	747
XspI	CTAG	2 cut(s)	90, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.