Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007522

Physical Location & Seq

Genomic Coordinates Reverse (-)

6283989 .. 6285051

Gene Structure 1063 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g08410.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGTTAGAACTCCTTGCCGCGATGAAAATGGAATGAAGAAAGGTACGTGGACACCTGATGAAGACAGGAAGCTAATTGCTTATGTCACCAGGTATGGCTACTGGAATTGGCGCCAACTTCCCAAATTTGCAGGTTTGTCGAGGTGTGGGAAGAGTTGTAGACTGCGGTGGATGAATTATTTGAGGCCAAACATCAAGAGAGGAAACTACAGCAAAGAAGAAGAGGAAACTATTGTCAAATTACACGAAAAATTGGGGAATAGATGGTCTGCTATAGCAGCTCAGCTACCAGGAAGAACGGACAATGAGATCGATCAGGTAAATCACTGGCATACAAACCTCAAGAAGCGCACGAATAATAAACAGTGCAACTCATCATTTTCATCATCAGCCACAAATACTGAAGAAACTCCCAGTTACTCAAGCCTTGAAGCAGCAGTGGATCAACCAATTAAGAAAGCTATTTTTCCAAATACAGAAAGTACCGTTACCTCTCAAGTAACCCAAAAAACTGATCGATCGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

176

Amino Acids

20.25

Weight (kDa)

9.51

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007522)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g44340
malus_domestica	MD09G1098600.v1.1 MD17G1086700.v1.1
prunus_persica	Prupe.3G227800_v2.0.a1
pyrus_communis	pycom09g02230 pycom17g08410
rosa_chinensis	RchiOBHm_Chr2g0161241 RchiOBHm_Chr2g0161271 RchiOBHm_Chr7g0234171
rosa_laevigata	RLG00000021270 RLG00000021274
rosa_multiflora	Rmu_co8161708.1_g000001 Rmu_sc0009869.1_g000002 Rmu_ssc0000196.1_g000010
rosa_roxburghii	Rroxscaffold_2G00088960
rosa_rugosa	Rorug02G0487200 Rorug02G0487600
rosa_samantha	Rh2AG554400 Rh2BG567700 Rh2CG538000 Rh2CG538200 Rh2DG577100 Rh7BG412400
rosa_wichuraiana	Rw2G045840 Rw2G045870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	122
AccB1I	GGYRCC	1 cut(s)	111
AccI	GTMKAC	1 cut(s)	160
AccII	CGCG	1 cut(s)	21
AciI	CCGC	2 cut(s)	19, 166
AclWI	GGATC	1 cut(s)	450
AcsI	RAATTY	1 cut(s)	125
AcuI	CTGAAG	1 cut(s)	423
AcyI	GRCGYC	1 cut(s)	112
AfaI	GTAC	2 cut(s)	46, 484
AgsI	TTSAA	1 cut(s)	431
AjnI	CCWGG	2 cut(s)	89, 289
AluBI	AGCT	4 cut(s)	73, 281, 286, 461
AluI	AGCT	4 cut(s)	73, 281, 286, 461
AlwI	GGATC	1 cut(s)	450
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	2 cut(s)	278, 434
ApoI	RAATTY	1 cut(s)	125
AspLEI	GCGC	2 cut(s)	114, 351
AsuHPI	GGTGA	1 cut(s)	79
BanI	GGYRCC	1 cut(s)	111
BbsI	GAAGAC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	290, 446
BccI	CCATC	1 cut(s)	258
BcgI	CGANNNNNNTGC	2 cut(s)	120, 154
BciT130I	CCWGG	2 cut(s)	91, 291
BfmI	CTRYAG	2 cut(s)	208, 273
BfoI	RGCGCY	1 cut(s)	115
BfuAI	ACCTGC	1 cut(s)	122
BisI	GCNGC	3 cut(s)	19, 279, 435
BlpI	GCTNAGC	1 cut(s)	282
BlsI	GCNGC	3 cut(s)	20, 280, 436
Bme1390I	CCNGG	2 cut(s)	91, 291
BmiI	GGNNCC	1 cut(s)	113
BmrFI	CCNGG	2 cut(s)	91, 291
BmrI	ACTGGG	1 cut(s)	408
BmuI	ACTGGG	1 cut(s)	408
BpiI	GAAGAC	1 cut(s)	69
Bpu1102I	GCTNAGC	1 cut(s)	282
BpuEI	CTTGAG	3 cut(s)	326, 406, 480
Bsa29I	ATCGAT	2 cut(s)	312, 517
BsaAI	YACGTR	1 cut(s)	48
BsaHI	GRCGYC	1 cut(s)	112
Bse1I	ACTGG	3 cut(s)	107, 332, 414
BseBI	CCWGG	2 cut(s)	91, 291
BseCI	ATCGAT	2 cut(s)	312, 517
BseGI	GGATG	1 cut(s)	177
BseMII	CTCAG	1 cut(s)	296
BseNI	ACTGG	3 cut(s)	107, 332, 414
BseXI	GCAGC	2 cut(s)	290, 446
Bsh1236I	CGCG	1 cut(s)	21
Bsh1285I	CGRYCG	1 cut(s)	521
BshFI	GGCC	1 cut(s)	187
BshNI	GGYRCC	1 cut(s)	111
BshVI	ATCGAT	2 cut(s)	312, 517
BsiEI	CGRYCG	1 cut(s)	521
BsnI	GGCC	1 cut(s)	187
Bsp143I	GATC	5 cut(s)	309, 313, 442, 514, 518
Bsp1720I	GCTNAGC	1 cut(s)	282
BspACI	CCGC	2 cut(s)	19, 166
BspANI	GGCC	1 cut(s)	187
BspCNI	CTCAG	1 cut(s)	295
BspDI	ATCGAT	2 cut(s)	312, 517
BspFNI	CGCG	1 cut(s)	21
BspLI	GGNNCC	1 cut(s)	113
BspMI	ACCTGC	1 cut(s)	122
BspPI	GGATC	1 cut(s)	450
BspT107I	GGYRCC	1 cut(s)	111
BsrI	ACTGG	3 cut(s)	107, 332, 414
BssMI	GATC	5 cut(s)	309, 313, 442, 514, 518
BssNI	GRCGYC	1 cut(s)	112
Bst2UI	CCWGG	2 cut(s)	91, 291
Bst4CI	ACNGT	2 cut(s)	366, 487
Bst6I	CTCTTC	2 cut(s)	146, 216
BstACI	GRCGYC	1 cut(s)	112
BstBAI	YACGTR	1 cut(s)	48
BstDEI	CTNAG	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	177
BstFNI	CGCG	1 cut(s)	21
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	2 cut(s)	114, 351
BstKTI	GATC	5 cut(s)	312, 316, 445, 517, 521
BstMBI	GATC	5 cut(s)	309, 313, 442, 514, 518
BstMCI	CGRYCG	1 cut(s)	521
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNI	CCWGG	2 cut(s)	91, 291
BstSCI	CCNGG	2 cut(s)	89, 289
BstSFI	CTRYAG	2 cut(s)	208, 273
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	2 cut(s)	290, 446
BstV2I	GAAGAC	1 cut(s)	69
Bsu15I	ATCGAT	2 cut(s)	312, 517
BsuRI	GGCC	1 cut(s)	187
BsuTUI	ATCGAT	2 cut(s)	312, 517
BtgZI	GCGATG	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	177
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	3 cut(s)	325, 371, 444
BveI	ACCTGC	1 cut(s)	122
CfoI	GCGC	2 cut(s)	114, 351
ClaI	ATCGAT	2 cut(s)	312, 517
CsiI	ACCWGGT	1 cut(s)	89
Csp6I	GTAC	2 cut(s)	45, 483
CviJI	RGCY	8 cut(s)	73, 99, 187, 281, 286, 392, 426, 461
CviKI_1	RGCY	8 cut(s)	73, 99, 187, 281, 286, 392, 426, 461
CviQI	GTAC	2 cut(s)	45, 483
DdeI	CTNAG	1 cut(s)	282
DinI	GGCGCC	1 cut(s)	113
DpnI	GATC	5 cut(s)	311, 315, 444, 516, 520
DpnII	GATC	5 cut(s)	309, 313, 442, 514, 518
Eam1104I	CTCTTC	2 cut(s)	146, 216
EarI	CTCTTC	2 cut(s)	146, 216
Eco57I	CTGAAG	1 cut(s)	423
EcoRII	CCWGG	2 cut(s)	89, 289
EgeI	GGCGCC	1 cut(s)	113
EheI	GGCGCC	1 cut(s)	113
FaiI	YATR	4 cut(s)	84, 96, 275, 333
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	3 cut(s)	19, 279, 435
FokI	GGATG	1 cut(s)	184
Fsp4HI	GCNGC	3 cut(s)	19, 279, 435
GlaI	GCGC	2 cut(s)	113, 350
GluI	GCNGC	3 cut(s)	19, 279, 435
HaeII	RGCGCY	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	187
HhaI	GCGC	2 cut(s)	114, 351
Hin1I	GRCGYC	1 cut(s)	112
Hin6I	GCGC	2 cut(s)	112, 349
HinP1I	GCGC	2 cut(s)	112, 349
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	2 cut(s)	51, 161
Hpy188III	TCNNGA	2 cut(s)	196, 343
Hpy8I	GTNNAC	2 cut(s)	51, 161
HpyCH4III	ACNGT	2 cut(s)	366, 487
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	2 cut(s)	131, 369
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	1 cut(s)	282
HpySE526I	ACGT	1 cut(s)	47
Hsp92I	GRCGYC	1 cut(s)	112
HspAI	GCGC	2 cut(s)	112, 349
KasI	GGCGCC	1 cut(s)	111
Kzo9I	GATC	5 cut(s)	309, 313, 442, 514, 518
Lsp1109I	GCAGC	2 cut(s)	290, 446
MabI	ACCWGGT	1 cut(s)	89
MaeII	ACGT	1 cut(s)	47
MaeIII	GTNAC	4 cut(s)	85, 416, 487, 499
MalI	GATC	5 cut(s)	311, 315, 444, 516, 520
MboI	GATC	5 cut(s)	309, 313, 442, 514, 518
MboII	GAAGA	7 cut(s)	49, 74, 163, 230, 233, 306, 416
MluCI	AATT	7 cut(s)	75, 106, 125, 175, 239, 251, 450
Mly113I	GGCGCC	1 cut(s)	112
MnlI	CCTC	6 cut(s)	135, 177, 194, 217, 350, 502
MseI	TTAA	1 cut(s)	453
MspR9I	CCNGG	2 cut(s)	91, 291
MvaI	CCWGG	2 cut(s)	91, 291
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	1 cut(s)	278
NarI	GGCGCC	1 cut(s)	112
NdeII	GATC	5 cut(s)	309, 313, 442, 514, 518
NlaIV	GGNNCC	1 cut(s)	113
NmuCI	GTSAC	1 cut(s)	85
PkrI	GCNGC	3 cut(s)	20, 280, 436
Ple19I	CGATCG	1 cut(s)	521
PluTI	GGCGCC	1 cut(s)	115
Ppu21I	YACGTR	1 cut(s)	48
Psp6I	CCWGG	2 cut(s)	89, 289
PspGI	CCWGG	2 cut(s)	89, 289
PspN4I	GGNNCC	1 cut(s)	113
PvuI	CGATCG	1 cut(s)	521
RsaI	GTAC	2 cut(s)	46, 484
RsaNI	GTAC	2 cut(s)	45, 483
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	3 cut(s)	19, 279, 435
Sau3AI	GATC	5 cut(s)	309, 313, 442, 514, 518
ScrFI	CCNGG	2 cut(s)	91, 291
SexAI	ACCWGGT	1 cut(s)	89
SfcI	CTRYAG	2 cut(s)	208, 273
SfoI	GGCGCC	1 cut(s)	113
SmlI	CTYRAG	3 cut(s)	341, 421, 495
SmoI	CTYRAG	3 cut(s)	341, 421, 495
Sse9I	AATT	7 cut(s)	75, 106, 125, 175, 239, 251, 450
SsiI	CCGC	2 cut(s)	19, 166
SspDI	GGCGCC	1 cut(s)	111
StyD4I	CCNGG	2 cut(s)	89, 289
TaaI	ACNGT	2 cut(s)	366, 487
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	3 cut(s)	140, 312, 517
TasI	AATT	7 cut(s)	75, 106, 125, 175, 239, 251, 450
TauI	GCSGC	1 cut(s)	21
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	3 cut(s)	332, 371, 444
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	2 cut(s)	278, 434
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	5 cut(s)	39, 50, 75, 188, 372
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	3 cut(s)	332, 371, 444
XapI	RAATTY	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.