Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007522

Physical Location & Seq

Genomic Coordinates Forward (+)

73577308 .. 73578184

Gene Structure 877 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021270

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGTGAGAACTCCTTGCTGTGATGAAAGGGGAATGAAGAAAGGTACATGGACTCCGGAGGAAGATAGGAAGCTCATAGCTTATGTTACTAGGTATGGCTGCAGGAATTGGCGCCAACTCCCCAAGTTTGCTGGGCTTTCAAGAAGAGGAAATAATAATCAGACTTCACAAAAGCTGGGGAACAAATGGTCTGTGATTGCGGCACAGCTTCAGGGAAGAACTGACAATGAGGTTAAGAATCACTGGCACACAAGCCTCAAGAAAAGTTTAATGATGAACAAGCACAAGGCGTCCTCAGTTTCAATAACGCACGATGATCATCATGAAGAAGTAGTACCGAAATCATCGGATCAGCCAAAGACTACTGCTACTGCTGATTTCGCAAATGCAGAAACTACTGTTGATCAAATCCCCCAAATTGATTATTTTGATTACCCAGAACTGTGGTCGCCACAGCCATCATCGAGTGAGGTCTCGTCCATGACCACCGATACTGCGGTTGCGATTACTGCCGCAGATGGTTTGGTTGTGGAGGACAATGCTACTTCAGCTGCCATGGAAACAATTTATGGAGATTTCGGAGATAATTTCTGGACAGAGCCATTTCTGGCTGATAATTCCTACAACCCAACTGGTTTTAATTTATACACCCTTGATGGAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

222

Amino Acids

24.72

Weight (kDa)

5.35

Isoelectric Point (pI)

32.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 51	1.1e-08	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	57 - 84	2.2e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007522)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g44340
malus_domestica	MD09G1098600.v1.1 MD17G1086700.v1.1
prunus_persica	Prupe.3G227800_v2.0.a1
pyrus_communis	pycom09g02230 pycom17g08410
rosa_chinensis	RchiOBHm_Chr2g0161241 RchiOBHm_Chr2g0161271 RchiOBHm_Chr7g0234171
rosa_laevigata	RLG00000021270 RLG00000021274
rosa_multiflora	Rmu_co8161708.1_g000001 Rmu_sc0009869.1_g000002 Rmu_ssc0000196.1_g000010
rosa_roxburghii	Rroxscaffold_2G00088960
rosa_rugosa	Rorug02G0487200 Rorug02G0487600
rosa_samantha	Rh2AG554400 Rh2BG567700 Rh2CG538000 Rh2CG538200 Rh2DG577100 Rh7BG412400
rosa_wichuraiana	Rw2G045840 Rw2G045870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	111
AccIII	TCCGGA	1 cut(s)	55
AciI	CCGC	3 cut(s)	200, 497, 513
AclWI	GGATC	1 cut(s)	357
AcuI	CTGAAG	2 cut(s)	194, 531
AcyI	GRCGYC	2 cut(s)	112, 290
AfaI	GTAC	2 cut(s)	46, 336
AgsI	TTSAA	2 cut(s)	141, 303
AluBI	AGCT	5 cut(s)	73, 80, 175, 208, 551
AluI	AGCT	5 cut(s)	73, 80, 175, 208, 551
Alw26I	GTCTC	1 cut(s)	478
AlwI	GGATC	1 cut(s)	357
Aor13HI	TCCGGA	1 cut(s)	55
ApeKI	GCWGC	2 cut(s)	99, 551
AspLEI	GCGC	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	16
BaeI	ACNNNNGTAYC	2 cut(s)	483, 516
BanI	GGYRCC	1 cut(s)	111
BarI	GAAGNNNNNNTAC	2 cut(s)	318, 350
BbvI	GCAGC	2 cut(s)	86, 538
BccI	CCATC	3 cut(s)	466, 512, 650
BclI	TGATCA	2 cut(s)	316, 403
BcoDI	GTCTC	1 cut(s)	478
BfaI	CTAG	1 cut(s)	90
BfmI	CTRYAG	1 cut(s)	100
BfoI	RGCGCY	1 cut(s)	115
BisI	GCNGC	4 cut(s)	100, 201, 513, 552
BlsI	GCNGC	4 cut(s)	101, 202, 514, 553
BmiI	GGNNCC	2 cut(s)	113, 661
BpuEI	CTTGAG	1 cut(s)	242
BsaBI	GATNNNNATC	1 cut(s)	318
BsaHI	GRCGYC	2 cut(s)	112, 290
BsaI	GGTCTC	1 cut(s)	478
BsaJI	CCNNGG	1 cut(s)	555
BsaWI	WCCGGW	1 cut(s)	55
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bse1I	ACTGG	2 cut(s)	248, 637
Bse8I	GATNNNNATC	1 cut(s)	318
BseAI	TCCGGA	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	555
BseJI	GATNNNNATC	1 cut(s)	318
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	2 cut(s)	248, 637
BseXI	GCAGC	2 cut(s)	86, 538
BseYI	CCCAGC	2 cut(s)	131, 175
BshNI	GGYRCC	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	56
BsmAI	GTCTC	1 cut(s)	478
Bso31I	GGTCTC	1 cut(s)	478
Bsp13I	TCCGGA	1 cut(s)	55
Bsp143I	GATC	3 cut(s)	316, 349, 403
Bsp19I	CCATGG	1 cut(s)	555
BspACI	CCGC	3 cut(s)	200, 497, 513
BspCNI	CTCAG	1 cut(s)	308
BspEI	TCCGGA	1 cut(s)	55
BspHI	TCATGA	1 cut(s)	322
BspLI	GGNNCC	2 cut(s)	113, 661
BspMAI	CTGCAG	1 cut(s)	104
BspPI	GGATC	1 cut(s)	357
BspT107I	GGYRCC	1 cut(s)	111
BspTNI	GGTCTC	1 cut(s)	478
BsrI	ACTGG	2 cut(s)	248, 637
BssECI	CCNNGG	1 cut(s)	555
BssMI	GATC	3 cut(s)	316, 349, 403
BssNI	GRCGYC	2 cut(s)	112, 290
BssT1I	CCWWGG	1 cut(s)	555
Bst4CI	ACNGT	2 cut(s)	400, 444
Bst6I	CTCTTC	1 cut(s)	139
BstACI	GRCGYC	2 cut(s)	112, 290
BstDEI	CTNAG	1 cut(s)	295
BstDSI	CCRYGG	1 cut(s)	555
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	3 cut(s)	319, 352, 406
BstMAI	GTCTC	1 cut(s)	478
BstMBI	GATC	3 cut(s)	316, 349, 403
BstMWI	GCNNNNNNNGC	3 cut(s)	380, 509, 548
BstSFI	CTRYAG	1 cut(s)	100
BstV1I	GCAGC	2 cut(s)	86, 538
BstXI	CCANNNNNNTGG	1 cut(s)	444
BtgI	CCRYGG	1 cut(s)	555
BtsIMutI	CAGTG	1 cut(s)	241
CciI	TCATGA	1 cut(s)	322
CfoI	GCGC	1 cut(s)	114
CseI	GACGC	1 cut(s)	279
Csp6I	GTAC	2 cut(s)	45, 335
CviAII	CATG	4 cut(s)	48, 323, 481, 556
CviQI	GTAC	2 cut(s)	45, 335
DdeI	CTNAG	1 cut(s)	295
DinI	GGCGCC	1 cut(s)	113
DpnI	GATC	3 cut(s)	318, 351, 405
DpnII	GATC	3 cut(s)	316, 349, 403
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	555
Eco31I	GGTCTC	1 cut(s)	478
Eco57I	CTGAAG	2 cut(s)	194, 531
EcoT14I	CCWWGG	1 cut(s)	555
EgeI	GGCGCC	1 cut(s)	113
EheI	GGCGCC	1 cut(s)	113
ErhI	CCWWGG	1 cut(s)	555
FaeI	CATG	4 cut(s)	51, 326, 484, 559
FaiI	YATR	9 cut(s)	49, 77, 84, 96, 324, 482, 557, 570, 646
FatI	CATG	4 cut(s)	47, 322, 480, 555
FbaI	TGATCA	2 cut(s)	316, 403
Fnu4HI	GCNGC	4 cut(s)	100, 201, 513, 552
Fsp4HI	GCNGC	4 cut(s)	100, 201, 513, 552
FspBI	CTAG	1 cut(s)	90
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	4 cut(s)	100, 201, 513, 552
GsaI	CCCAGC	2 cut(s)	135, 179
HaeII	RGCGCY	1 cut(s)	115
HapII	CCGG	1 cut(s)	56
HgaI	GACGC	1 cut(s)	279
HhaI	GCGC	1 cut(s)	114
Hin1I	GRCGYC	2 cut(s)	112, 290
Hin1II	CATG	4 cut(s)	51, 326, 484, 559
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HinfI	GANTC	2 cut(s)	52, 238
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	3 cut(s)	162, 349, 581
Hpy188III	TCNNGA	5 cut(s)	56, 141, 259, 323, 592
HpyCH4III	ACNGT	2 cut(s)	400, 444
HpyCH4V	TGCA	2 cut(s)	102, 389
HpyF10VI	GCNNNNNNNGC	3 cut(s)	380, 509, 548
HpyF3I	CTNAG	1 cut(s)	295
Hsp92I	GRCGYC	2 cut(s)	112, 290
Hsp92II	CATG	4 cut(s)	51, 326, 484, 559
HspAI	GCGC	1 cut(s)	112
KasI	GGCGCC	1 cut(s)	111
Kpn2I	TCCGGA	1 cut(s)	55
Ksp22I	TGATCA	2 cut(s)	316, 403
Kzo9I	GATC	3 cut(s)	316, 349, 403
LmnI	GCTCC	1 cut(s)	659
Lsp1109I	GCAGC	2 cut(s)	86, 538
MaeI	CTAG	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	3 cut(s)	318, 351, 405
MboI	GATC	3 cut(s)	316, 349, 403
MboII	GAAGA	5 cut(s)	49, 74, 156, 228, 338
MluCI	AATT	6 cut(s)	106, 417, 564, 586, 616, 640
Mly113I	GGCGCC	1 cut(s)	112
MlyI	GAGTC	1 cut(s)	46
MnlI	CCTC	7 cut(s)	52, 140, 223, 266, 304, 463, 526
MroI	TCCGGA	1 cut(s)	55
MseI	TTAA	3 cut(s)	234, 269, 639
MspA1I	CMGCKG	1 cut(s)	551
MspI	CCGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	3 cut(s)	380, 509, 548
NarI	GGCGCC	1 cut(s)	112
NcoI	CCATGG	1 cut(s)	555
NdeII	GATC	3 cut(s)	316, 349, 403
NlaIII	CATG	4 cut(s)	51, 326, 484, 559
NlaIV	GGNNCC	2 cut(s)	113, 661
PagI	TCATGA	1 cut(s)	322
PfeI	GAWTC	1 cut(s)	238
PkrI	GCNGC	4 cut(s)	101, 202, 514, 553
PleI	GAGTC	1 cut(s)	46
PluTI	GGCGCC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	46
PspFI	CCCAGC	2 cut(s)	131, 175
PspN4I	GGNNCC	2 cut(s)	113, 661
PstI	CTGCAG	1 cut(s)	104
PvuII	CAGCTG	1 cut(s)	551
RsaI	GTAC	2 cut(s)	46, 336
RsaNI	GTAC	2 cut(s)	45, 335
SaqAI	TTAA	3 cut(s)	234, 269, 639
SatI	GCNGC	4 cut(s)	100, 201, 513, 552
Sau3AI	GATC	3 cut(s)	316, 349, 403
SchI	GAGTC	1 cut(s)	46
SetI	ASST	9 cut(s)	46, 75, 82, 95, 177, 210, 234, 474, 553
SfcI	CTRYAG	1 cut(s)	100
SfoI	GGCGCC	1 cut(s)	113
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	6 cut(s)	106, 417, 564, 586, 616, 640
SsiI	CCGC	3 cut(s)	200, 497, 513
SspDI	GGCGCC	1 cut(s)	111
SspMI	CTAG	1 cut(s)	90
StyI	CCWWGG	1 cut(s)	555
TaaI	ACNGT	2 cut(s)	400, 444
TaqI	TCGA	1 cut(s)	464
TasI	AATT	6 cut(s)	106, 417, 564, 586, 616, 640
TauI	GCSGC	2 cut(s)	203, 515
TfiI	GAWTC	1 cut(s)	238
Tru1I	TTAA	3 cut(s)	234, 269, 639
Tru9I	TTAA	3 cut(s)	234, 269, 639
TscAI	CASTG	1 cut(s)	248
TseI	GCWGC	2 cut(s)	99, 551
TspDTI	ATGAA	4 cut(s)	39, 50, 290, 339
TspRI	CASTG	1 cut(s)	248
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.