Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0007522

Physical Location & Seq

Genomic Coordinates Reverse (-)

46479927 .. 46481822

Gene Structure 1896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG412400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGTTAGAACTTGTTGTCCTGCGAGTAATGAAGGGAGTGCGAAGAAAGGTACATGGACACCGGTGGAAGATAGGAAGCTCCTAGCTTATATTACTAGGTATGGCTGCTGGAATTGGCGCCAACTCCCCAAGTATGCTGGGCTTTCAAGGTGTGGGAAGAAGTGCAGACTGAGGTGGCTGAATTACTTGAGGCCGAATATCAAGAGAGGAAACTACACCAGTGAAGAAGAGGAAGTGATAATCAGACTTCACGAAAAGCTGGGGAACAGATGGTCTGCGATTGCGGCACAGCTTCCGGGAAGAACTGACAATGAGACTCATGGGTTACCCCTGCATACAGACTTCAATCTTTTCAAAGGTCGGTCCTCATCAGATAATTCATGGCTTGGTCCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

132

Amino Acids

15.18

Weight (kDa)

9.71

Isoelectric Point (pI)

49.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	16 - 63	1.8e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	19 - 78	1.1e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 105	1.3e-12	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	73 - 104	5e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007522)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g44340
malus_domestica	MD09G1098600.v1.1 MD17G1086700.v1.1
prunus_persica	Prupe.3G227800_v2.0.a1
pyrus_communis	pycom09g02230 pycom17g08410
rosa_chinensis	RchiOBHm_Chr2g0161241 RchiOBHm_Chr2g0161271 RchiOBHm_Chr7g0234171
rosa_laevigata	RLG00000021270 RLG00000021274
rosa_multiflora	Rmu_co8161708.1_g000001 Rmu_sc0009869.1_g000002 Rmu_ssc0000196.1_g000010
rosa_roxburghii	Rroxscaffold_2G00088960
rosa_rugosa	Rorug02G0487200 Rorug02G0487600
rosa_samantha	Rh2AG554400 Rh2BG567700 Rh2CG538000 Rh2CG538200 Rh2DG577100 Rh7BG412400
rosa_wichuraiana	Rw2G045840 Rw2G045870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	117
AciI	CCGC	1 cut(s)	284
AcyI	GRCGYC	1 cut(s)	118
AfaI	GTAC	1 cut(s)	52
AgeI	ACCGGT	1 cut(s)	61
AgsI	TTSAA	3 cut(s)	147, 346, 355
AloI	GAACNNNNNNTCC	1 cut(s)	33
AluBI	AGCT	4 cut(s)	79, 86, 259, 292
AluI	AGCT	4 cut(s)	79, 86, 259, 292
Alw26I	GTCTC	1 cut(s)	308
AoxI	GGCC	1 cut(s)	191
ApeKI	GCWGC	1 cut(s)	105
AsiGI	ACCGGT	1 cut(s)	61
AspLEI	GCGC	1 cut(s)	120
AspS9I	GGNCC	2 cut(s)	363, 389
AsuC2I	CCSGG	1 cut(s)	297
AvaII	GGWCC	2 cut(s)	363, 389
BanI	GGYRCC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	92
BccI	CCATC	1 cut(s)	264
BcnI	CCSGG	1 cut(s)	297
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	2 cut(s)	83, 96
BfoI	RGCGCY	1 cut(s)	121
BisI	GCNGC	2 cut(s)	106, 285
BlsI	GCNGC	2 cut(s)	107, 286
Bme1390I	CCNGG	1 cut(s)	297
Bme18I	GGWCC	2 cut(s)	363, 389
BmgT120I	GGNCC	2 cut(s)	363, 389
BmiI	GGNNCC	1 cut(s)	119
BmrFI	CCNGG	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	208
BpuMI	CCSGG	1 cut(s)	297
BsaHI	GRCGYC	1 cut(s)	118
BsaWI	WCCGGW	1 cut(s)	61
Bse118I	RCCGGY	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	1 cut(s)	219
BseXI	GCAGC	1 cut(s)	92
BseYI	CCCAGC	2 cut(s)	137, 259
BsgI	GTGCAG	1 cut(s)	184
BshFI	GGCC	1 cut(s)	193
BshNI	GGYRCC	1 cut(s)	117
BshTI	ACCGGT	1 cut(s)	61
BsiSI	CCGG	2 cut(s)	62, 296
BsmAI	GTCTC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	193
BspACI	CCGC	1 cut(s)	284
BspANI	GGCC	1 cut(s)	193
BspCNI	CTCAG	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	119
BspT107I	GGYRCC	1 cut(s)	117
BsrFI	RCCGGY	1 cut(s)	61
BsrI	ACTGG	1 cut(s)	219
BssAI	RCCGGY	1 cut(s)	61
BssNI	GRCGYC	1 cut(s)	118
Bst6I	CTCTTC	1 cut(s)	222
BstACI	GRCGYC	1 cut(s)	118
BstDEI	CTNAG	1 cut(s)	170
BstEII	GGTNACC	1 cut(s)	324
BstH2I	RGCGCY	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	120
BstMAI	GTCTC	1 cut(s)	308
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstPI	GGTNACC	1 cut(s)	324
BstSCI	CCNGG	1 cut(s)	295
BstV1I	GCAGC	1 cut(s)	92
BsuRI	GGCC	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	226
CfoI	GCGC	1 cut(s)	120
Cfr10I	RCCGGY	1 cut(s)	61
Cfr13I	GGNCC	2 cut(s)	363, 389
Csp6I	GTAC	1 cut(s)	51
CspAI	ACCGGT	1 cut(s)	61
CviAII	CATG	3 cut(s)	54, 320, 381
CviJI	RGCY	9 cut(s)	79, 86, 105, 142, 178, 193, 259, 292, 385
CviKI_1	RGCY	9 cut(s)	79, 86, 105, 142, 178, 193, 259, 292, 385
CviQI	GTAC	1 cut(s)	51
DdeI	CTNAG	1 cut(s)	170
DinI	GGCGCC	1 cut(s)	119
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco47I	GGWCC	2 cut(s)	363, 389
Eco91I	GGTNACC	1 cut(s)	324
EcoO65I	GGTNACC	1 cut(s)	324
EgeI	GGCGCC	1 cut(s)	119
EheI	GGCGCC	1 cut(s)	119
FaeI	CATG	3 cut(s)	57, 323, 384
FaiI	YATR	7 cut(s)	55, 90, 102, 135, 321, 336, 382
FatI	CATG	3 cut(s)	53, 319, 380
Fnu4HI	GCNGC	2 cut(s)	106, 285
Fsp4HI	GCNGC	2 cut(s)	106, 285
FspBI	CTAG	2 cut(s)	83, 96
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	2 cut(s)	106, 285
GsaI	CCCAGC	2 cut(s)	141, 263
HaeII	RGCGCY	1 cut(s)	121
HaeIII	GGCC	1 cut(s)	193
HapII	CCGG	2 cut(s)	62, 296
HhaI	GCGC	1 cut(s)	120
Hin1I	GRCGYC	1 cut(s)	118
Hin1II	CATG	3 cut(s)	57, 323, 384
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HinfI	GANTC	1 cut(s)	316
HpaII	CCGG	2 cut(s)	62, 296
Hpy188I	TCNGA	2 cut(s)	245, 373
Hpy188III	TCNNGA	2 cut(s)	202, 251
HpyAV	CCTTC	1 cut(s)	26
HpyCH4V	TGCA	2 cut(s)	165, 334
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	1 cut(s)	170
Hsp92I	GRCGYC	1 cut(s)	118
Hsp92II	CATG	3 cut(s)	57, 323, 384
HspAI	GCGC	1 cut(s)	118
KasI	GGCGCC	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	84
LpnPI	CCDG	8 cut(s)	33, 75, 94, 123, 232, 245, 309, 344
Lsp1109I	GCAGC	1 cut(s)	92
MaeI	CTAG	2 cut(s)	83, 96
MaeIII	GTNAC	1 cut(s)	324
MboII	GAAGA	6 cut(s)	55, 80, 169, 236, 239, 312
MluCI	AATT	3 cut(s)	112, 181, 376
Mly113I	GGCGCC	1 cut(s)	118
MlyI	GAGTC	1 cut(s)	310
MnlI	CCTC	5 cut(s)	165, 183, 200, 223, 376
MspI	CCGG	2 cut(s)	62, 296
MspR9I	CCNGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	1 cut(s)	284
NarI	GGCGCC	1 cut(s)	118
NciI	CCSGG	1 cut(s)	297
NlaIII	CATG	3 cut(s)	57, 323, 384
NlaIV	GGNNCC	1 cut(s)	119
PfoI	TCCNGGA	1 cut(s)	295
PinAI	ACCGGT	1 cut(s)	61
PkrI	GCNGC	2 cut(s)	107, 286
PleI	GAGTC	1 cut(s)	310
PluTI	GGCGCC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	310
PspEI	GGTNACC	1 cut(s)	324
PspFI	CCCAGC	2 cut(s)	137, 259
PspN4I	GGNNCC	1 cut(s)	119
PspPI	GGNCC	2 cut(s)	363, 389
RsaI	GTAC	1 cut(s)	52
RsaNI	GTAC	1 cut(s)	51
SatI	GCNGC	2 cut(s)	106, 285
Sau96I	GGNCC	2 cut(s)	363, 389
SchI	GAGTC	1 cut(s)	310
ScrFI	CCNGG	1 cut(s)	297
SetI	ASST	9 cut(s)	52, 81, 88, 101, 152, 176, 261, 294, 361
SfoI	GGCGCC	1 cut(s)	119
SgrAI	CRCCGGYG	1 cut(s)	61
SinI	GGWCC	2 cut(s)	363, 389
SmlI	CTYRAG	1 cut(s)	187
SmoI	CTYRAG	1 cut(s)	187
Sse9I	AATT	3 cut(s)	112, 181, 376
SsiI	CCGC	1 cut(s)	284
SspDI	GGCGCC	1 cut(s)	117
SspMI	CTAG	2 cut(s)	83, 96
StyD4I	CCNGG	1 cut(s)	295
TaqII	GACCGA	1 cut(s)	351
TasI	AATT	3 cut(s)	112, 181, 376
TauI	GCSGC	1 cut(s)	287
TscAI	CASTG	1 cut(s)	226
TseI	GCWGC	1 cut(s)	105
TspDTI	ATGAA	2 cut(s)	45, 369
TspRI	CASTG	1 cut(s)	226
VpaK11BI	GGWCC	2 cut(s)	363, 389
XspI	CTAG	2 cut(s)	83, 96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.