Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8161708.1

Orthogroup ID

OG0007522

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 368

Gene Structure 368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8161708.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 368 bp

catcggatcagccaaagactactgctcctgctgatttcgcaaatgcagaaactactgttgatcaaattccccaaattgattatcttgattacccagaactgtggtcgccacagccttcatcaagtgaggtctcgtccatgaccagcgatactgcggttgcaattactgccgcagatggtttggttgtggaggacaatgctacttcagctgccatgggaacaatttatggagatttcggtgataatttctggacagaaccatttctggctgataattcctacaacacaagtggtttttatacacccttgatggagcctgaatttctgtatccaccatttgatggagatttcttgtacggagcaacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

121

Amino Acids

13.12

Weight (kDa)

4.05

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007522)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g44340
malus_domestica	MD09G1098600.v1.1 MD17G1086700.v1.1
prunus_persica	Prupe.3G227800_v2.0.a1
pyrus_communis	pycom09g02230 pycom17g08410
rosa_chinensis	RchiOBHm_Chr2g0161241 RchiOBHm_Chr2g0161271 RchiOBHm_Chr7g0234171
rosa_laevigata	RLG00000021270 RLG00000021274
rosa_multiflora	Rmu_co8161708.1_g000001 Rmu_sc0009869.1_g000002 Rmu_ssc0000196.1_g000010
rosa_roxburghii	Rroxscaffold_2G00088960
rosa_rugosa	Rorug02G0487200 Rorug02G0487600
rosa_samantha	Rh2AG554400 Rh2BG567700 Rh2CG538000 Rh2CG538200 Rh2DG577100 Rh7BG412400
rosa_wichuraiana	Rw2G045840 Rw2G045870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	340
AciI	CCGC	2 cut(s)	154, 170
AclWI	GGATC	1 cut(s)	14
AcsI	RAATTY	2 cut(s)	65, 319
AcuI	CTGAAG	1 cut(s)	188
AfaI	GTAC	1 cut(s)	355
AfiI	CCNNNNNNNGG	1 cut(s)	340
AluBI	AGCT	1 cut(s)	208
AluI	AGCT	1 cut(s)	208
Alw26I	GTCTC	1 cut(s)	135
AlwI	GGATC	1 cut(s)	14
ApeKI	GCWGC	1 cut(s)	208
ApoI	RAATTY	2 cut(s)	65, 319
Asp700I	GAANNNNTTC	1 cut(s)	260
AsuHPI	GGTGA	1 cut(s)	250
BaeI	ACNNNNGTAYC	2 cut(s)	140, 173
BbvI	GCAGC	1 cut(s)	195
BccI	CCATC	3 cut(s)	169, 303, 334
BciVI	GTATCC	1 cut(s)	338
BclI	TGATCA	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	135
BfuI	GTATCC	1 cut(s)	338
BisI	GCNGC	2 cut(s)	170, 209
BlsI	GCNGC	2 cut(s)	171, 210
BmiI	GGNNCC	1 cut(s)	314
BsaI	GGTCTC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	212
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bsc4I	CCNNNNNNNGG	1 cut(s)	340
BseDI	CCNNGG	1 cut(s)	212
BseLI	CCNNNNNNNGG	1 cut(s)	340
BseXI	GCAGC	1 cut(s)	195
BslI	CCNNNNNNNGG	1 cut(s)	340
BsmAI	GTCTC	1 cut(s)	135
Bso31I	GGTCTC	1 cut(s)	135
Bsp143I	GATC	2 cut(s)	6, 60
Bsp19I	CCATGG	1 cut(s)	212
BspACI	CCGC	2 cut(s)	154, 170
BspLI	GGNNCC	1 cut(s)	314
BspPI	GGATC	1 cut(s)	14
BspTNI	GGTCTC	1 cut(s)	135
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	2 cut(s)	6, 60
BssT1I	CCWWGG	1 cut(s)	212
Bst4CI	ACNGT	2 cut(s)	57, 101
BstAPI	GCANNNNNTGC	1 cut(s)	166
BstDSI	CCRYGG	1 cut(s)	212
BstKTI	GATC	2 cut(s)	9, 63
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	2 cut(s)	6, 60
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 166, 205
BstV1I	GCAGC	1 cut(s)	195
BstXI	CCANNNNNNTGG	1 cut(s)	101
BsuI	GTATCC	1 cut(s)	338
BtgI	CCRYGG	1 cut(s)	212
Csp6I	GTAC	1 cut(s)	354
CspCI	CAANNNNNGTGG	2 cut(s)	270, 305
CviAII	CATG	3 cut(s)	138, 213, 365
CviJI	RGCY	5 cut(s)	12, 114, 208, 268, 315
CviKI_1	RGCY	5 cut(s)	12, 114, 208, 268, 315
CviQI	GTAC	1 cut(s)	354
DpnI	GATC	2 cut(s)	8, 62
DpnII	GATC	2 cut(s)	6, 60
Eco130I	CCWWGG	1 cut(s)	212
Eco31I	GGTCTC	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	188
EcoT14I	CCWWGG	1 cut(s)	212
ErhI	CCWWGG	1 cut(s)	212
FaeI	CATG	3 cut(s)	141, 216, 368
FaiI	YATR	5 cut(s)	139, 214, 227, 299, 366
FatI	CATG	3 cut(s)	137, 212, 364
FbaI	TGATCA	1 cut(s)	60
Fnu4HI	GCNGC	2 cut(s)	170, 209
Fsp4HI	GCNGC	2 cut(s)	170, 209
GluI	GCNGC	2 cut(s)	170, 209
Hin1II	CATG	3 cut(s)	141, 216, 368
HphI	GGTGA	1 cut(s)	250
Hpy188I	TCNGA	1 cut(s)	6
Hpy188III	TCNNGA	2 cut(s)	85, 249
HpyAV	CCTTC	1 cut(s)	125
HpyCH4III	ACNGT	2 cut(s)	57, 101
HpyCH4V	TGCA	2 cut(s)	46, 160
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 166, 205
Hsp92II	CATG	3 cut(s)	141, 216, 368
Ksp22I	TGATCA	1 cut(s)	60
Kzo9I	GATC	2 cut(s)	6, 60
LmnI	GCTCC	3 cut(s)	30, 312, 358
LpnPI	CCDG	6 cut(s)	41, 107, 156, 234, 250, 329
Lsp1109I	GCAGC	1 cut(s)	195
MalI	GATC	2 cut(s)	8, 62
MboI	GATC	2 cut(s)	6, 60
MluCI	AATT	7 cut(s)	65, 74, 161, 221, 243, 273, 319
MnlI	CCTC	2 cut(s)	120, 183
MroXI	GAANNNNTTC	1 cut(s)	260
MspA1I	CMGCKG	1 cut(s)	208
MwoI	GCNNNNNNNGC	3 cut(s)	37, 166, 205
NcoI	CCATGG	1 cut(s)	212
NdeII	GATC	2 cut(s)	6, 60
NlaIII	CATG	3 cut(s)	141, 216, 368
NlaIV	GGNNCC	1 cut(s)	314
PdmI	GAANNNNTTC	1 cut(s)	260
PflMI	CCANNNNNTGG	1 cut(s)	340
PkrI	GCNGC	2 cut(s)	171, 210
PspN4I	GGNNCC	1 cut(s)	314
PvuII	CAGCTG	1 cut(s)	208
RsaI	GTAC	1 cut(s)	355
RsaNI	GTAC	1 cut(s)	354
SatI	GCNGC	2 cut(s)	170, 209
Sau3AI	GATC	2 cut(s)	6, 60
SetI	ASST	2 cut(s)	131, 210
Sse9I	AATT	7 cut(s)	65, 74, 161, 221, 243, 273, 319
SsiI	CCGC	2 cut(s)	154, 170
StyI	CCWWGG	1 cut(s)	212
TaaI	ACNGT	2 cut(s)	57, 101
TasI	AATT	7 cut(s)	65, 74, 161, 221, 243, 273, 319
TauI	GCSGC	1 cut(s)	172
TseI	GCWGC	1 cut(s)	208
TspDTI	ATGAA	1 cut(s)	107
Van91I	CCANNNNNTGG	1 cut(s)	340
XapI	RAATTY	2 cut(s)	65, 319
XmnI	GAANNNNTTC	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.