Rw2G045840
MYB Family

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0007522
Physical Location & Seq
Forward (+)
72977899 .. 72978797
899 bp
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UTR
Exon/CDS
Intron
Rw2G045840.1

Sequence Viewer

Length: 744 bp
ATGGTGAGAACTCCTTGCTGTGATGAAAGGGGAGTGAAGAAAGGTACATGGACTCCGGAGGAAGATAGGAAGCTCATAGCTTATGTTACTAGGTATGGCTGCTGGAATTGGCGCCAACTCTCCAAGTTGGCTGGGCTTTCAAGGTGTGGGAAGAGTTGCAGGCTGAGGTGGCTGAATTACTTGAGGCCGAACATCAAGAGAGGAAACTACACCAATGAAGAAGAGGAAATAATAATCAGGCTTCACGAAAAGCTGGGGAACAAATGGTCTGCGATTGCGGCACAGCTTCAGGGAAGAACTGACAATGAGAAACGTTTAATGATGAACAAGCACAAGGCGTCCTCAGTTTCAATAACACATGATGATCATCATGAAGAAGTAGTACTGAAATCATCGGATCAGCCAAAGACTACTGCTACTGCTGATTTCGCAAATGCAGAAACTACTGTTGATCAAATTCCCCAAATTGATTATTTTGATTACCCAGAACTGTGGTCGCCACAGCCATCATCGAGTGAGGTCTCGTCCATGACCACCGATACTGCGGTTGCGATTACTGCTGCAGATGGTTTGGTTGTAGTGGACAATGCTACTTCAGCTGCCATGGAAACAATTTATGGAGATTTCGGAGATAATTTCTGGACAGAGCCATTTCTGGCCGATAATTCCTACAACCCAACTGGTTTTTATACACCCTTGATGGAGCCTGAGTTTCTGTATCCATCATTTGATGGAGCAATATGA

Protein Analysis

247

Amino Acids

27.99

Weight (kDa)

5.11

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.3e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 6.7e-16 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 103 1.7e-12 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 102 4.1e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 111
AccIII TCCGGA 1 cut(s) 55
AciI CCGC 2 cut(s) 278, 545
AclI AACGTT 1 cut(s) 313
AclWI GGATC 1 cut(s) 405
AcoI YGGCCR 1 cut(s) 657
AcsI RAATTY 1 cut(s) 456
AcuI CTGAAG 2 cut(s) 272, 579
AcyI GRCGYC 2 cut(s) 112, 338
AfaI GTAC 2 cut(s) 46, 384
AgsI TTSAA 2 cut(s) 141, 351
AluBI AGCT 5 cut(s) 73, 80, 253, 286, 599
AluI AGCT 5 cut(s) 73, 80, 253, 286, 599
Alw26I GTCTC 1 cut(s) 526
AlwI GGATC 1 cut(s) 405
Aor13HI TCCGGA 1 cut(s) 55
AoxI GGCC 2 cut(s) 185, 657
ApeKI GCWGC 3 cut(s) 99, 560, 599
ApoI RAATTY 1 cut(s) 456
AspLEI GCGC 1 cut(s) 114
AsuHPI GGTGA 1 cut(s) 16
BaeI ACNNNNGTAYC 2 cut(s) 531, 564
BanI GGYRCC 1 cut(s) 111
BarI GAAGNNNNNNTAC 2 cut(s) 366, 398
BbvCI CCTCAGC 1 cut(s) 164
BbvI GCAGC 3 cut(s) 86, 547, 586
BccI CCATC 5 cut(s) 514, 560, 694, 725, 730
BciVI GTATCC 1 cut(s) 729
BclI TGATCA 2 cut(s) 364, 451
BcoDI GTCTC 1 cut(s) 526
BfaI CTAG 1 cut(s) 90
BfmI CTRYAG 1 cut(s) 561
BfoI RGCGCY 1 cut(s) 115
BfuI GTATCC 1 cut(s) 729
BisI GCNGC 4 cut(s) 100, 279, 561, 600
BlsI GCNGC 4 cut(s) 101, 280, 562, 601
BmcAI AGTACT 1 cut(s) 384
BmiI GGNNCC 2 cut(s) 113, 705
Bpu10I CCTNAGC 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 202
BsaBI GATNNNNATC 1 cut(s) 366
BsaHI GRCGYC 2 cut(s) 112, 338
BsaI GGTCTC 1 cut(s) 526
BsaJI CCNNGG 1 cut(s) 603
BsaWI WCCGGW 1 cut(s) 55
BsaXI ACNNNNNCTCC 4 cut(s) 37, 67, 695, 725
Bse1I ACTGG 1 cut(s) 685
Bse8I GATNNNNATC 1 cut(s) 366
BseAI TCCGGA 1 cut(s) 55
BseDI CCNNGG 1 cut(s) 603
BseJI GATNNNNATC 1 cut(s) 366
BseMII CTCAG 3 cut(s) 155, 357, 699
BseNI ACTGG 1 cut(s) 685
BseXI GCAGC 3 cut(s) 86, 547, 586
BseYI CCCAGC 2 cut(s) 131, 253
BshFI GGCC 2 cut(s) 187, 659
BshNI GGYRCC 1 cut(s) 111
BsiSI CCGG 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 526
BsnI GGCC 2 cut(s) 187, 659
Bso31I GGTCTC 1 cut(s) 526
Bsp13I TCCGGA 1 cut(s) 55
Bsp143I GATC 3 cut(s) 364, 397, 451
Bsp19I CCATGG 1 cut(s) 603
BspACI CCGC 2 cut(s) 278, 545
BspANI GGCC 2 cut(s) 187, 659
BspCNI CTCAG 3 cut(s) 156, 356, 700
BspEI TCCGGA 1 cut(s) 55
BspHI TCATGA 1 cut(s) 370
BspLI GGNNCC 2 cut(s) 113, 705
BspMAI CTGCAG 1 cut(s) 565
BspPI GGATC 1 cut(s) 405
BspT107I GGYRCC 1 cut(s) 111
BspTNI GGTCTC 1 cut(s) 526
BsrI ACTGG 1 cut(s) 685
BssECI CCNNGG 1 cut(s) 603
BssMI GATC 3 cut(s) 364, 397, 451
BssNI GRCGYC 2 cut(s) 112, 338
BssT1I CCWWGG 1 cut(s) 603
Bst4CI ACNGT 2 cut(s) 448, 492
Bst6I CTCTTC 2 cut(s) 146, 216
BstACI GRCGYC 2 cut(s) 112, 338
BstC8I GCNNGC 1 cut(s) 161
BstDEI CTNAG 3 cut(s) 164, 343, 708
BstDSI CCRYGG 1 cut(s) 603
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 3 cut(s) 367, 400, 454
BstMAI GTCTC 1 cut(s) 526
BstMBI GATC 3 cut(s) 364, 397, 451
BstMWI GCNNNNNNNGC 5 cut(s) 169, 278, 428, 557, 596
BstSFI CTRYAG 1 cut(s) 561
BstV1I GCAGC 3 cut(s) 86, 547, 586
BstXI CCANNNNNNTGG 1 cut(s) 492
BsuI GTATCC 1 cut(s) 729
BsuRI GGCC 2 cut(s) 187, 659
BtgI CCRYGG 1 cut(s) 603
Cac8I GCNNGC 1 cut(s) 161
CciI TCATGA 1 cut(s) 370
CfoI GCGC 1 cut(s) 114
CseI GACGC 1 cut(s) 327
Csp6I GTAC 2 cut(s) 45, 383
CviAII CATG 5 cut(s) 48, 359, 371, 529, 604
CviQI GTAC 2 cut(s) 45, 383
DdeI CTNAG 3 cut(s) 164, 343, 708
DinI GGCGCC 1 cut(s) 113
DpnI GATC 3 cut(s) 366, 399, 453
DpnII GATC 3 cut(s) 364, 397, 451
EaeI YGGCCR 1 cut(s) 657
Eam1104I CTCTTC 2 cut(s) 146, 216
EarI CTCTTC 2 cut(s) 146, 216
Eco130I CCWWGG 1 cut(s) 603
Eco31I GGTCTC 1 cut(s) 526
Eco57I CTGAAG 2 cut(s) 272, 579
EcoT14I CCWWGG 1 cut(s) 603
EgeI GGCGCC 1 cut(s) 113
EheI GGCGCC 1 cut(s) 113
ErhI CCWWGG 1 cut(s) 603
FaeI CATG 5 cut(s) 51, 362, 374, 532, 607
FatI CATG 5 cut(s) 47, 358, 370, 528, 603
FbaI TGATCA 2 cut(s) 364, 451
Fnu4HI GCNGC 4 cut(s) 100, 279, 561, 600
Fsp4HI GCNGC 4 cut(s) 100, 279, 561, 600
FspBI CTAG 1 cut(s) 90
GlaI GCGC 1 cut(s) 113
GluI GCNGC 4 cut(s) 100, 279, 561, 600
GsaI CCCAGC 2 cut(s) 135, 257
HaeII RGCGCY 1 cut(s) 115
HaeIII GGCC 2 cut(s) 187, 659
HapII CCGG 1 cut(s) 56
HgaI GACGC 1 cut(s) 327
HhaI GCGC 1 cut(s) 114
Hin1I GRCGYC 2 cut(s) 112, 338
Hin1II CATG 5 cut(s) 51, 362, 374, 532, 607
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HinfI GANTC 1 cut(s) 52
HpaII CCGG 1 cut(s) 56
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 583
Hpy188I TCNGA 2 cut(s) 397, 629
Hpy188III TCNNGA 5 cut(s) 56, 196, 245, 371, 640
Hpy8I GTNNAC 1 cut(s) 583
HpyCH4III ACNGT 2 cut(s) 448, 492
HpyCH4IV ACGT 1 cut(s) 313
HpyCH4V TGCA 3 cut(s) 159, 437, 563
HpyF10VI GCNNNNNNNGC 5 cut(s) 169, 278, 428, 557, 596
HpyF3I CTNAG 3 cut(s) 164, 343, 708
HpySE526I ACGT 1 cut(s) 313
Hsp92I GRCGYC 2 cut(s) 112, 338
Hsp92II CATG 5 cut(s) 51, 362, 374, 532, 607
HspAI GCGC 1 cut(s) 112
KasI GGCGCC 1 cut(s) 111
Kpn2I TCCGGA 1 cut(s) 55
Ksp22I TGATCA 2 cut(s) 364, 451
Kzo9I GATC 3 cut(s) 364, 397, 451
LmnI GCTCC 2 cut(s) 703, 734
Lsp1109I GCAGC 3 cut(s) 86, 547, 586
MaeI CTAG 1 cut(s) 90
MaeII ACGT 1 cut(s) 313
MaeIII GTNAC 1 cut(s) 85
MalI GATC 3 cut(s) 366, 399, 453
MboI GATC 3 cut(s) 364, 397, 451
MboII GAAGA 7 cut(s) 49, 74, 163, 230, 233, 306, 386
MluCI AATT 7 cut(s) 106, 175, 456, 465, 612, 634, 664
Mly113I GGCGCC 1 cut(s) 112
MlyI GAGTC 1 cut(s) 46
MnlI CCTC 7 cut(s) 52, 159, 177, 194, 217, 352, 511
MroI TCCGGA 1 cut(s) 55
MseI TTAA 1 cut(s) 317
MspA1I CMGCKG 1 cut(s) 599
MspI CCGG 1 cut(s) 56
MwoI GCNNNNNNNGC 5 cut(s) 169, 278, 428, 557, 596
NarI GGCGCC 1 cut(s) 112
NcoI CCATGG 1 cut(s) 603
NdeII GATC 3 cut(s) 364, 397, 451
NlaIII CATG 5 cut(s) 51, 362, 374, 532, 607
NlaIV GGNNCC 2 cut(s) 113, 705
PagI TCATGA 1 cut(s) 370
PkrI GCNGC 4 cut(s) 101, 280, 562, 601
PleI GAGTC 1 cut(s) 46
PluTI GGCGCC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 46
Psp1406I AACGTT 1 cut(s) 313
PspFI CCCAGC 2 cut(s) 131, 253
PspN4I GGNNCC 2 cut(s) 113, 705
PstI CTGCAG 1 cut(s) 565
PvuII CAGCTG 1 cut(s) 599
RsaI GTAC 2 cut(s) 46, 384
RsaNI GTAC 2 cut(s) 45, 383
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 4 cut(s) 100, 279, 561, 600
Sau3AI GATC 3 cut(s) 364, 397, 451
ScaI AGTACT 1 cut(s) 384
SchI GAGTC 1 cut(s) 46
SfcI CTRYAG 1 cut(s) 561
SfoI GGCGCC 1 cut(s) 113
SmlI CTYRAG 1 cut(s) 181
SmoI CTYRAG 1 cut(s) 181
Sse9I AATT 7 cut(s) 106, 175, 456, 465, 612, 634, 664
SsiI CCGC 2 cut(s) 278, 545
SspDI GGCGCC 1 cut(s) 111
SspMI CTAG 1 cut(s) 90
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 2 cut(s) 448, 492
TaiI ACGT 1 cut(s) 316
TaqI TCGA 1 cut(s) 512
TasI AATT 7 cut(s) 106, 175, 456, 465, 612, 634, 664
TatI WGTACW 1 cut(s) 382
TauI GCSGC 1 cut(s) 281
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TseI GCWGC 3 cut(s) 99, 560, 599
TspDTI ATGAA 4 cut(s) 39, 231, 338, 387
XapI RAATTY 1 cut(s) 456
XspI CTAG 1 cut(s) 90
ZrmI AGTACT 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.