Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0007522

Physical Location & Seq

Genomic Coordinates Reverse (-)

1705913 .. 1707366

Gene Structure 1454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g02230.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGTTAGAACTCCTTGCCGTGATGAAAATGGAATGAAGAAAGGTACGTGGACACCTGAGGAAGACAGGAAGCTAATTGCTTATGTCACTAGGTATGGCTGCTGGAATTGGCGCCAACTTCCCAAATTTGCAGGTCTGTCAAGGTGTGGGAAGAGTTGCAGACTGCGGTGGATGAATTATTTGAGGCCAAACATCAAGAGAGGAAACTACAGCAAAGAAGAAGAGGAAACTATCGTCAAATTACACGAAAAATTGGGGAATAGATGGTCTGCTATAGCAGCTCAGCTACCAGGAAGAACGGACAACGAGATCAAAAATCACTGGCATACAAACCTCAAGAAACGCACGAATAAAAAACAGTGCAACTCATCATTTTCATCATCAGCCACAAATACTGAAGAAACTCCCAGTTCCTCAAACCTAGAAGCAGCAGTGGATCAACCAATTAAGAAAGCTATTTTTCCAAATGCAGAAAGTACCACTGCCCTCCAAGTAACCCAAAAAAGTGATGATCGTGTTGATAATAGCTCCCAACTTTCGTCGTCTCCACAACCGTCATCGAGTGAAGTCTCGTCCATGAGTGCAGATGATAATTGGGTTAATTTTGTGGAAGACTTTAATCTTAGTTCCATGGAAGCATATGCAGACAATCAGTTCATCGATGATTTCTGGACCGAGCCATTTTTGGCTGATAATTCCTACATTCCAAGTGGGTTTTACACGCCCTTGATGGATTCCGAGTTTTTGTATCCACTATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

254

Amino Acids

29.0

Weight (kDa)

6.01

Isoelectric Point (pI)

50.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007522)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g44340
malus_domestica	MD09G1098600.v1.1 MD17G1086700.v1.1
prunus_persica	Prupe.3G227800_v2.0.a1
pyrus_communis	pycom09g02230 pycom17g08410
rosa_chinensis	RchiOBHm_Chr2g0161241 RchiOBHm_Chr2g0161271 RchiOBHm_Chr7g0234171
rosa_laevigata	RLG00000021270 RLG00000021274
rosa_multiflora	Rmu_co8161708.1_g000001 Rmu_sc0009869.1_g000002 Rmu_ssc0000196.1_g000010
rosa_roxburghii	Rroxscaffold_2G00088960
rosa_rugosa	Rorug02G0487200 Rorug02G0487600
rosa_samantha	Rh2AG554400 Rh2BG567700 Rh2CG538000 Rh2CG538200 Rh2DG577100 Rh7BG412400
rosa_wichuraiana	Rw2G045840 Rw2G045870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	122
AccB1I	GGYRCC	1 cut(s)	111
AciI	CCGC	1 cut(s)	166
AclWI	GGATC	1 cut(s)	444
AcsI	RAATTY	1 cut(s)	125
AcuI	CTGAAG	1 cut(s)	417
AcyI	GRCGYC	1 cut(s)	112
AfaI	GTAC	2 cut(s)	46, 478
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	5 cut(s)	73, 281, 286, 455, 528
AluI	AGCT	5 cut(s)	73, 281, 286, 455, 528
Alw26I	GTCTC	2 cut(s)	549, 574
AlwI	GGATC	1 cut(s)	444
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	3 cut(s)	99, 278, 428
ApoI	RAATTY	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	1 cut(s)	672
AvaII	GGWCC	1 cut(s)	672
AxyI	CCTNAGG	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	111
BbsI	GAAGAC	2 cut(s)	69, 618
BbvI	GCAGC	3 cut(s)	86, 290, 440
BccI	CCATC	2 cut(s)	258, 724
BceAI	ACGGC	1 cut(s)	3
BciT130I	CCWGG	1 cut(s)	291
BciVI	GTATCC	1 cut(s)	759
BcoDI	GTCTC	2 cut(s)	549, 574
BfaI	CTAG	2 cut(s)	90, 422
BfmI	CTRYAG	2 cut(s)	208, 273
BfoI	RGCGCY	1 cut(s)	115
BfuAI	ACCTGC	1 cut(s)	122
BfuI	GTATCC	1 cut(s)	759
BisI	GCNGC	3 cut(s)	100, 279, 429
BlpI	GCTNAGC	1 cut(s)	282
BlsI	GCNGC	3 cut(s)	101, 280, 430
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	672
BmgT120I	GGNCC	1 cut(s)	672
BmiI	GGNNCC	1 cut(s)	113
BmrFI	CCNGG	1 cut(s)	291
BmrI	ACTGGG	1 cut(s)	402
BmuI	ACTGGG	1 cut(s)	402
BpiI	GAAGAC	2 cut(s)	69, 618
Bpu1102I	GCTNAGC	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	320
Bsa29I	ATCGAT	1 cut(s)	660
BsaAI	YACGTR	1 cut(s)	48
BsaHI	GRCGYC	1 cut(s)	112
BsaJI	CCNNGG	1 cut(s)	630
Bse1I	ACTGG	2 cut(s)	326, 408
Bse21I	CCTNAGG	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	291
BseCI	ATCGAT	1 cut(s)	660
BseDI	CCNNGG	1 cut(s)	630
BseGI	GGATG	1 cut(s)	177
BseMII	CTCAG	2 cut(s)	48, 296
BseNI	ACTGG	2 cut(s)	326, 408
BseXI	GCAGC	3 cut(s)	86, 290, 440
BsgI	GTGCAG	1 cut(s)	603
BshFI	GGCC	1 cut(s)	187
BshNI	GGYRCC	1 cut(s)	111
BshVI	ATCGAT	1 cut(s)	660
BsmAI	GTCTC	2 cut(s)	549, 574
BsmBI	CGTCTC	1 cut(s)	549
BsnI	GGCC	1 cut(s)	187
Bsp143I	GATC	3 cut(s)	309, 436, 511
Bsp1720I	GCTNAGC	1 cut(s)	282
Bsp19I	CCATGG	1 cut(s)	630
BspACI	CCGC	1 cut(s)	166
BspANI	GGCC	1 cut(s)	187
BspCNI	CTCAG	2 cut(s)	49, 295
BspDI	ATCGAT	1 cut(s)	660
BspLI	GGNNCC	1 cut(s)	113
BspMI	ACCTGC	1 cut(s)	122
BspPI	GGATC	1 cut(s)	444
BspT107I	GGYRCC	1 cut(s)	111
BsrI	ACTGG	2 cut(s)	326, 408
BssECI	CCNNGG	1 cut(s)	630
BssMI	GATC	3 cut(s)	309, 436, 511
BssNI	GRCGYC	1 cut(s)	112
BssT1I	CCWWGG	1 cut(s)	630
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	360, 555
Bst6I	CTCTTC	2 cut(s)	146, 216
BstACI	GRCGYC	1 cut(s)	112
BstBAI	YACGTR	1 cut(s)	48
BstDEI	CTNAG	3 cut(s)	57, 282, 623
BstDSI	CCRYGG	1 cut(s)	630
BstF5I	GGATG	1 cut(s)	177
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	3 cut(s)	312, 439, 514
BstMAI	GTCTC	2 cut(s)	549, 574
BstMBI	GATC	3 cut(s)	309, 436, 511
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	2 cut(s)	208, 273
BstV1I	GCAGC	3 cut(s)	86, 290, 440
BstV2I	GAAGAC	2 cut(s)	69, 618
Bsu15I	ATCGAT	1 cut(s)	660
Bsu36I	CCTNAGG	1 cut(s)	57
BsuI	GTATCC	1 cut(s)	759
BsuRI	GGCC	1 cut(s)	187
BsuTUI	ATCGAT	1 cut(s)	660
BtgI	CCRYGG	1 cut(s)	630
BtsCI	GGATG	1 cut(s)	177
BtsI	GCAGTG	2 cut(s)	438, 480
BtsIMutI	CAGTG	4 cut(s)	319, 365, 438, 480
BveI	ACCTGC	1 cut(s)	122
CfoI	GCGC	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	672
ClaI	ATCGAT	1 cut(s)	660
Csp6I	GTAC	2 cut(s)	45, 477
CviAII	CATG	2 cut(s)	577, 631
CviQI	GTAC	2 cut(s)	45, 477
DdeI	CTNAG	3 cut(s)	57, 282, 623
DinI	GGCGCC	1 cut(s)	113
DpnI	GATC	3 cut(s)	311, 438, 513
DpnII	GATC	3 cut(s)	309, 436, 511
Eam1104I	CTCTTC	2 cut(s)	146, 216
EarI	CTCTTC	2 cut(s)	146, 216
Eco130I	CCWWGG	1 cut(s)	630
Eco47I	GGWCC	1 cut(s)	672
Eco57I	CTGAAG	1 cut(s)	417
Eco81I	CCTNAGG	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	289
EcoT14I	CCWWGG	1 cut(s)	630
EgeI	GGCGCC	1 cut(s)	113
EheI	GGCGCC	1 cut(s)	113
ErhI	CCWWGG	1 cut(s)	630
Esp3I	CGTCTC	1 cut(s)	549
FaeI	CATG	2 cut(s)	580, 634
FaiI	YATR	8 cut(s)	84, 96, 275, 327, 578, 632, 640, 642
FatI	CATG	2 cut(s)	576, 630
FauNDI	CATATG	1 cut(s)	640
Fnu4HI	GCNGC	3 cut(s)	100, 279, 429
FokI	GGATG	1 cut(s)	184
Fsp4HI	GCNGC	3 cut(s)	100, 279, 429
FspBI	CTAG	2 cut(s)	90, 422
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	3 cut(s)	100, 279, 429
HaeII	RGCGCY	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	187
HhaI	GCGC	1 cut(s)	114
Hin1I	GRCGYC	1 cut(s)	112
Hin1II	CATG	2 cut(s)	580, 634
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HinfI	GANTC	1 cut(s)	734
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	1 cut(s)	739
Hpy188III	TCNNGA	3 cut(s)	196, 337, 670
Hpy8I	GTNNAC	1 cut(s)	51
Hpy99I	CGWCG	1 cut(s)	544
HpyCH4III	ACNGT	2 cut(s)	360, 555
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	6 cut(s)	131, 159, 363, 470, 584, 644
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	3 cut(s)	57, 282, 623
HpySE526I	ACGT	1 cut(s)	47
Hsp92I	GRCGYC	1 cut(s)	112
Hsp92II	CATG	2 cut(s)	580, 634
HspAI	GCGC	1 cut(s)	112
KasI	GGCGCC	1 cut(s)	111
Kzo9I	GATC	3 cut(s)	309, 436, 511
LmnI	GCTCC	1 cut(s)	533
LpnPI	CCDG	9 cut(s)	52, 69, 88, 117, 276, 303, 307, 421, 655
Lsp1109I	GCAGC	3 cut(s)	86, 290, 440
MaeI	CTAG	2 cut(s)	90, 422
MaeII	ACGT	1 cut(s)	47
MaeIII	GTNAC	2 cut(s)	85, 493
MalI	GATC	3 cut(s)	311, 438, 513
MboI	GATC	3 cut(s)	309, 436, 511
MboII	GAAGA	8 cut(s)	49, 74, 163, 230, 233, 306, 410, 623
Mly113I	GGCGCC	1 cut(s)	112
MnlI	CCTC	7 cut(s)	52, 177, 194, 217, 344, 424, 497
MseI	TTAA	3 cut(s)	447, 600, 618
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	278
NarI	GGCGCC	1 cut(s)	112
NcoI	CCATGG	1 cut(s)	630
NdeI	CATATG	1 cut(s)	640
NdeII	GATC	3 cut(s)	309, 436, 511
NlaIII	CATG	2 cut(s)	580, 634
NlaIV	GGNNCC	1 cut(s)	113
NmuCI	GTSAC	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	734
PkrI	GCNGC	3 cut(s)	101, 280, 430
PluTI	GGCGCC	1 cut(s)	115
Ppu21I	YACGTR	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	113
PspPI	GGNCC	1 cut(s)	672
RsaI	GTAC	2 cut(s)	46, 478
RsaNI	GTAC	2 cut(s)	45, 477
SaqAI	TTAA	3 cut(s)	447, 600, 618
SatI	GCNGC	3 cut(s)	100, 279, 429
Sau3AI	GATC	3 cut(s)	309, 436, 511
Sau96I	GGNCC	1 cut(s)	672
ScrFI	CCNGG	1 cut(s)	291
SfcI	CTRYAG	2 cut(s)	208, 273
SfoI	GGCGCC	1 cut(s)	113
SinI	GGWCC	1 cut(s)	672
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
SsiI	CCGC	1 cut(s)	166
SspDI	GGCGCC	1 cut(s)	111
SspMI	CTAG	2 cut(s)	90, 422
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	630
TaaI	ACNGT	2 cut(s)	360, 555
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	2 cut(s)	560, 660
TaqII	GACCGA	1 cut(s)	689
TfiI	GAWTC	1 cut(s)	734
Tru1I	TTAA	3 cut(s)	447, 600, 618
Tru9I	TTAA	3 cut(s)	447, 600, 618
TscAI	CASTG	4 cut(s)	326, 365, 438, 487
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	3 cut(s)	99, 278, 428
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	5 cut(s)	39, 50, 188, 366, 646
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	4 cut(s)	326, 365, 438, 487
VpaK11BI	GGWCC	1 cut(s)	672
XapI	RAATTY	1 cut(s)	125
XspI	CTAG	2 cut(s)	90, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.