Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007522

Physical Location & Seq

Genomic Coordinates Reverse (-)

58770239 .. 58770912

Gene Structure 674 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20986

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGTGAGAACTCCTTGCTGTGATCAGTGTAACAAAGGGAGTCTGAAGAATGGTACATGGGCACCGGTGGAAGATAGGAAGCTCCTAGATTATATTACTAGGTTTGGCTACTGGAATTGGCGCCAACTCCCCAAGTTTGCTGGGCTTTCAAGGTGTGGGAAGAAGTGCAGACTGAGGTGGCTGAATTACTTGAATCCCAACATCAAGAGAAGAAACTACACCTGTGAAGAAGAGGAAATAATAATCAGACTTCACGAAAAGCTGGGGAACAAATGGTCTGCGATTGCGGAACAGCTTCAGGGAAGAACTGACATAGAGGTTAAGAATCACTGGCACAGAAACCTCAAGAGACGCTTCATGGTAAACAAGCGTACAAGGCCTCCTCAGTTTCAATCTGATGCAGGAGCTATATGTGATGATCAACCAAGGACCAAGAGGATCCCACAGACACCGGATTATCTCAAGGACTATGTCTGGTCCAAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

162

Amino Acids

19.51

Weight (kDa)

9.92

Isoelectric Point (pI)

60.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	18 - 64	6e-11	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	20 - 78	1.3e-10	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	70 - 115	4.2e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	74 - 117	4e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007522)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g44340
malus_domestica	MD09G1098600.v1.1 MD17G1086700.v1.1
prunus_persica	Prupe.3G227800_v2.0.a1
pyrus_communis	pycom09g02230 pycom17g08410
rosa_chinensis	RchiOBHm_Chr2g0161241 RchiOBHm_Chr2g0161271 RchiOBHm_Chr7g0234171
rosa_laevigata	RLG00000021270 RLG00000021274
rosa_multiflora	Rmu_co8161708.1_g000001 Rmu_sc0009869.1_g000002 Rmu_ssc0000196.1_g000010
rosa_roxburghii	Rroxscaffold_2G00088960
rosa_rugosa	Rorug02G0487200 Rorug02G0487600
rosa_samantha	Rh2AG554400 Rh2BG567700 Rh2CG538000 Rh2CG538200 Rh2DG577100 Rh7BG412400
rosa_wichuraiana	Rw2G045840 Rw2G045870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	61, 120
AciI	CCGC	1 cut(s)	287
AclWI	GGATC	2 cut(s)	433, 446
AcuI	CTGAAG	2 cut(s)	65, 281
AcyI	GRCGYC	1 cut(s)	121
AfaI	GTAC	2 cut(s)	55, 373
AgeI	ACCGGT	1 cut(s)	64
AgsI	TTSAA	3 cut(s)	150, 193, 392
AluBI	AGCT	4 cut(s)	82, 262, 295, 407
AluI	AGCT	4 cut(s)	82, 262, 295, 407
Alw26I	GTCTC	1 cut(s)	343
AlwI	GGATC	2 cut(s)	433, 446
AoxI	GGCC	1 cut(s)	377
AsiGI	ACCGGT	1 cut(s)	64
Asp700I	GAANNNNTTC	1 cut(s)	294
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	2 cut(s)	429, 477
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	2 cut(s)	429, 477
BaeGI	GKGCMC	1 cut(s)	64
BamHI	GGATCC	1 cut(s)	438
BanI	GGYRCC	2 cut(s)	61, 120
BclI	TGATCA	2 cut(s)	22, 418
BcoDI	GTCTC	1 cut(s)	343
BfaI	CTAG	2 cut(s)	86, 99
BfoI	RGCGCY	1 cut(s)	124
Bme18I	GGWCC	2 cut(s)	429, 477
BmgT120I	GGNCC	2 cut(s)	429, 477
BmiI	GGNNCC	3 cut(s)	63, 122, 440
BmsI	GCATC	1 cut(s)	388
BpuEI	CTTGAG	2 cut(s)	329, 446
BsaHI	GRCGYC	1 cut(s)	121
BsaJI	CCNNGG	1 cut(s)	425
BsaWI	WCCGGW	2 cut(s)	64, 451
BsaXI	ACNNNNNCTCC	2 cut(s)	364, 394
Bse118I	RCCGGY	1 cut(s)	64
Bse1I	ACTGG	2 cut(s)	116, 335
BseDI	CCNNGG	1 cut(s)	425
BseMII	CTCAG	2 cut(s)	164, 398
BseNI	ACTGG	2 cut(s)	116, 335
BseRI	GAGGAG	1 cut(s)	372
BseSI	GKGCMC	1 cut(s)	64
BseYI	CCCAGC	2 cut(s)	140, 262
BsgI	GTGCAG	1 cut(s)	187
BshFI	GGCC	1 cut(s)	379
BshNI	GGYRCC	2 cut(s)	61, 120
BshTI	ACCGGT	1 cut(s)	64
BsiSI	CCGG	2 cut(s)	65, 452
BsmAI	GTCTC	1 cut(s)	343
BsmBI	CGTCTC	1 cut(s)	343
BsnI	GGCC	1 cut(s)	379
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp143I	GATC	3 cut(s)	22, 418, 438
BspACI	CCGC	1 cut(s)	287
BspANI	GGCC	1 cut(s)	379
BspCNI	CTCAG	2 cut(s)	165, 397
BspLI	GGNNCC	3 cut(s)	63, 122, 440
BspPI	GGATC	2 cut(s)	433, 446
BspT107I	GGYRCC	2 cut(s)	61, 120
BsrFI	RCCGGY	1 cut(s)	64
BsrI	ACTGG	2 cut(s)	116, 335
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	1 cut(s)	425
BssMI	GATC	3 cut(s)	22, 418, 438
BssNI	GRCGYC	1 cut(s)	121
BssT1I	CCWWGG	1 cut(s)	425
Bst6I	CTCTTC	1 cut(s)	225
BstACI	GRCGYC	1 cut(s)	121
BstDEI	CTNAG	2 cut(s)	173, 384
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	3 cut(s)	25, 421, 441
BstMAI	GTCTC	1 cut(s)	343
BstMBI	GATC	3 cut(s)	22, 418, 438
BstMWI	GCNNNNNNNGC	1 cut(s)	376
BstSLI	GKGCMC	1 cut(s)	64
BstX2I	RGATCY	1 cut(s)	438
BstYI	RGATCY	1 cut(s)	438
BsuRI	GGCC	1 cut(s)	379
BtsIMutI	CAGTG	2 cut(s)	32, 328
CfoI	GCGC	1 cut(s)	123
Cfr10I	RCCGGY	1 cut(s)	64
Cfr13I	GGNCC	2 cut(s)	429, 477
CseI	GACGC	1 cut(s)	360
Csp6I	GTAC	2 cut(s)	54, 372
CspAI	ACCGGT	1 cut(s)	64
CviAII	CATG	2 cut(s)	57, 358
CviJI	RGCY	8 cut(s)	82, 108, 145, 181, 262, 295, 379, 407
CviKI_1	RGCY	8 cut(s)	82, 108, 145, 181, 262, 295, 379, 407
CviQI	GTAC	2 cut(s)	54, 372
DdeI	CTNAG	2 cut(s)	173, 384
DinI	GGCGCC	1 cut(s)	122
DpnI	GATC	3 cut(s)	24, 420, 440
DpnII	GATC	3 cut(s)	22, 418, 438
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	425
Eco147I	AGGCCT	1 cut(s)	379
Eco47I	GGWCC	2 cut(s)	429, 477
Eco57I	CTGAAG	2 cut(s)	65, 281
EcoT14I	CCWWGG	1 cut(s)	425
EgeI	GGCGCC	1 cut(s)	122
EheI	GGCGCC	1 cut(s)	122
ErhI	CCWWGG	1 cut(s)	425
Esp3I	CGTCTC	1 cut(s)	343
FaeI	CATG	2 cut(s)	60, 361
FaiI	YATR	7 cut(s)	58, 93, 314, 359, 410, 412, 471
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FatI	CATG	2 cut(s)	56, 357
FbaI	TGATCA	2 cut(s)	22, 418
FspBI	CTAG	2 cut(s)	86, 99
GlaI	GCGC	1 cut(s)	122
GsaI	CCCAGC	2 cut(s)	144, 266
HaeII	RGCGCY	1 cut(s)	124
HaeIII	GGCC	1 cut(s)	379
HapII	CCGG	2 cut(s)	65, 452
HgaI	GACGC	1 cut(s)	360
HhaI	GCGC	1 cut(s)	123
Hin1I	GRCGYC	1 cut(s)	121
Hin1II	CATG	2 cut(s)	60, 361
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HinfI	GANTC	3 cut(s)	40, 193, 325
HpaII	CCGG	2 cut(s)	65, 452
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	3 cut(s)	45, 248, 397
Hpy188III	TCNNGA	3 cut(s)	205, 254, 346
Hpy8I	GTNNAC	1 cut(s)	364
HpyCH4V	TGCA	2 cut(s)	168, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	376
HpyF3I	CTNAG	2 cut(s)	173, 384
Hsp92I	GRCGYC	1 cut(s)	121
Hsp92II	CATG	2 cut(s)	60, 361
HspAI	GCGC	1 cut(s)	121
KasI	GGCGCC	1 cut(s)	120
Ksp22I	TGATCA	2 cut(s)	22, 418
Kzo9I	GATC	3 cut(s)	22, 418, 438
LmnI	GCTCC	2 cut(s)	87, 404
LweI	GCATC	1 cut(s)	388
MaeI	CTAG	2 cut(s)	86, 99
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	3 cut(s)	24, 420, 440
MboI	GATC	3 cut(s)	22, 418, 438
MboII	GAAGA	7 cut(s)	58, 83, 172, 222, 239, 242, 315
MflI	RGATCY	1 cut(s)	438
MhlI	GDGCHC	1 cut(s)	64
MluCI	AATT	2 cut(s)	115, 184
Mly113I	GGCGCC	1 cut(s)	121
MlyI	GAGTC	1 cut(s)	49
MnlI	CCTC	7 cut(s)	168, 226, 310, 353, 390, 393, 429
MroXI	GAANNNNTTC	1 cut(s)	294
MseI	TTAA	1 cut(s)	321
MspI	CCGG	2 cut(s)	65, 452
MwoI	GCNNNNNNNGC	1 cut(s)	376
NarI	GGCGCC	1 cut(s)	121
NdeII	GATC	3 cut(s)	22, 418, 438
NlaIII	CATG	2 cut(s)	60, 361
NlaIV	GGNNCC	3 cut(s)	63, 122, 440
PceI	AGGCCT	1 cut(s)	379
PdmI	GAANNNNTTC	1 cut(s)	294
PfeI	GAWTC	2 cut(s)	193, 325
PflFI	GACNNNGTC	1 cut(s)	470
PinAI	ACCGGT	1 cut(s)	64
PleI	GAGTC	1 cut(s)	48
PluTI	GGCGCC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	48
PspFI	CCCAGC	2 cut(s)	140, 262
PspN4I	GGNNCC	3 cut(s)	63, 122, 440
PspPI	GGNCC	2 cut(s)	429, 477
PsuI	RGATCY	1 cut(s)	438
PsyI	GACNNNGTC	1 cut(s)	470
RsaI	GTAC	2 cut(s)	55, 373
RsaNI	GTAC	2 cut(s)	54, 372
SaqAI	TTAA	1 cut(s)	321
Sau3AI	GATC	3 cut(s)	22, 418, 438
Sau96I	GGNCC	2 cut(s)	429, 477
SchI	GAGTC	1 cut(s)	49
SduI	GDGCHC	1 cut(s)	64
SfaNI	GCATC	1 cut(s)	388
SfoI	GGCGCC	1 cut(s)	122
SgrAI	CRCCGGYG	1 cut(s)	64
SinI	GGWCC	2 cut(s)	429, 477
SmlI	CTYRAG	2 cut(s)	344, 461
SmoI	CTYRAG	2 cut(s)	344, 461
Sse9I	AATT	2 cut(s)	115, 184
SseBI	AGGCCT	1 cut(s)	379
SsiI	CCGC	1 cut(s)	287
SspDI	GGCGCC	1 cut(s)	120
SspMI	CTAG	2 cut(s)	86, 99
StuI	AGGCCT	1 cut(s)	379
StyI	CCWWGG	1 cut(s)	425
TasI	AATT	2 cut(s)	115, 184
TfiI	GAWTC	2 cut(s)	193, 325
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	2 cut(s)	32, 335
TspDTI	ATGAA	1 cut(s)	346
TspRI	CASTG	2 cut(s)	32, 335
Tth111I	GACNNNGTC	1 cut(s)	470
VpaK11BI	GGWCC	2 cut(s)	429, 477
XmnI	GAANNNNTTC	1 cut(s)	294
XspI	CTAG	2 cut(s)	86, 99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.