Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007522

Physical Location & Seq

Genomic Coordinates Forward (+)

71553587 .. 71554504

Gene Structure 918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG538200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGTGAGAACTCCTTGTTGTGATGAAAGGGGAATGAAGAAAGGTACATGGACTCCGGAGGAAGATAGGAAGCTCATAGCTTATGTTACTAGGTATGGCTGCTGGAATTGGCGCCAACTCCCCAAGTTTGCTGGGCTTTCAAGGTGTGGGAAGAGTTGCAGGCTGAGGTGGCTGAATTACTTGAGGCCGAACATCAAGAGAGGAAACTACACCAGTGAAGAAGAGGAAATAATAATCAGACTTCACGAAAAGCTGGGGAACAAATGGTCTGCGATTGCGGCACAGCTTCAGGGAAGAACTGACAATGAGGTTAAGAATCACTGGCACACAAACCTCAAGAAACGCTTAATGATGAACAAGCACAAGGCCTCCTCAGATTCAATCACACACGATGATCATCATGAAGAAGTAGTACCGAAATCATCGGATCAGCCAAAGACTACTGCTCCTGCTGATTTCGCAAATGCAGAAACTACTGTTGATCAAATTCCCCAAATTGATTATCTTGATTACCCAGAACTGTGGTCGCCACAGCCTTCATCGAGTGAGGTCTCGTCCATGACCAGCGATACTGCGGTTGCAATTACTGCCGCAGATGGTTTGGTTGTGGAGGACAATGCTACTTCAGCTGCCATGGGAACAATTTATGGAGATTTCGGAGATAATTTCTGGACAGAACCATTTCTGGCTGATAATTCCTACAACACAAGTGGTTTTTATACACCCTTGATGGAGCCTGAATTTCTGTATCCACCATTTGATGGAGATTTCTTGTACGGAGCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

262

Amino Acids

29.79

Weight (kDa)

5.3

Isoelectric Point (pI)

46.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	2.5e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	1e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	6.8e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 114	2.7e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007522)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g44340
malus_domestica	MD09G1098600.v1.1 MD17G1086700.v1.1
prunus_persica	Prupe.3G227800_v2.0.a1
pyrus_communis	pycom09g02230 pycom17g08410
rosa_chinensis	RchiOBHm_Chr2g0161241 RchiOBHm_Chr2g0161271 RchiOBHm_Chr7g0234171
rosa_laevigata	RLG00000021270 RLG00000021274
rosa_multiflora	Rmu_co8161708.1_g000001 Rmu_sc0009869.1_g000002 Rmu_ssc0000196.1_g000010
rosa_roxburghii	Rroxscaffold_2G00088960
rosa_rugosa	Rorug02G0487200 Rorug02G0487600
rosa_samantha	Rh2AG554400 Rh2BG567700 Rh2CG538000 Rh2CG538200 Rh2DG577100 Rh7BG412400
rosa_wichuraiana	Rw2G045840 Rw2G045870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	111
AccB7I	CCANNNNNTGG	1 cut(s)	761
AccIII	TCCGGA	1 cut(s)	55
AciI	CCGC	3 cut(s)	278, 575, 591
AclWI	GGATC	1 cut(s)	435
AcsI	RAATTY	2 cut(s)	486, 740
AcuI	CTGAAG	2 cut(s)	272, 609
AcyI	GRCGYC	1 cut(s)	112
AfaI	GTAC	3 cut(s)	46, 414, 776
AfiI	CCNNNNNNNGG	1 cut(s)	761
AgsI	TTSAA	2 cut(s)	141, 381
AluBI	AGCT	5 cut(s)	73, 80, 253, 286, 629
AluI	AGCT	5 cut(s)	73, 80, 253, 286, 629
Alw26I	GTCTC	1 cut(s)	556
AlwI	GGATC	1 cut(s)	435
Aor13HI	TCCGGA	1 cut(s)	55
AoxI	GGCC	2 cut(s)	185, 366
ApeKI	GCWGC	2 cut(s)	99, 629
ApoI	RAATTY	2 cut(s)	486, 740
Asp700I	GAANNNNTTC	1 cut(s)	681
AspLEI	GCGC	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	16
BaeI	ACNNNNGTAYC	2 cut(s)	561, 594
BanI	GGYRCC	1 cut(s)	111
BarI	GAAGNNNNNNTAC	2 cut(s)	396, 428
BbvCI	CCTCAGC	1 cut(s)	164
BbvI	GCAGC	2 cut(s)	86, 616
BccI	CCATC	3 cut(s)	590, 724, 755
BciVI	GTATCC	1 cut(s)	759
BclI	TGATCA	2 cut(s)	394, 481
BcoDI	GTCTC	1 cut(s)	556
BfaI	CTAG	1 cut(s)	90
BfoI	RGCGCY	1 cut(s)	115
BfuI	GTATCC	1 cut(s)	759
BisI	GCNGC	4 cut(s)	100, 279, 591, 630
BlsI	GCNGC	4 cut(s)	101, 280, 592, 631
BmiI	GGNNCC	2 cut(s)	113, 735
Bpu10I	CCTNAGC	1 cut(s)	164
BpuEI	CTTGAG	2 cut(s)	202, 320
BsaBI	GATNNNNATC	1 cut(s)	396
BsaHI	GRCGYC	1 cut(s)	112
BsaI	GGTCTC	1 cut(s)	556
BsaJI	CCNNGG	1 cut(s)	633
BsaWI	WCCGGW	1 cut(s)	55
BsaXI	ACNNNNNCTCC	6 cut(s)	37, 67, 353, 383, 430, 460
Bsc4I	CCNNNNNNNGG	1 cut(s)	761
Bse1I	ACTGG	2 cut(s)	213, 326
Bse8I	GATNNNNATC	1 cut(s)	396
BseAI	TCCGGA	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	633
BseJI	GATNNNNATC	1 cut(s)	396
BseLI	CCNNNNNNNGG	1 cut(s)	761
BseMII	CTCAG	2 cut(s)	155, 387
BseNI	ACTGG	2 cut(s)	213, 326
BseRI	GAGGAG	1 cut(s)	361
BseXI	GCAGC	2 cut(s)	86, 616
BseYI	CCCAGC	2 cut(s)	131, 253
BshFI	GGCC	2 cut(s)	187, 368
BshNI	GGYRCC	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	56
BslI	CCNNNNNNNGG	1 cut(s)	761
BsmAI	GTCTC	1 cut(s)	556
BsnI	GGCC	2 cut(s)	187, 368
Bso31I	GGTCTC	1 cut(s)	556
Bsp13I	TCCGGA	1 cut(s)	55
Bsp143I	GATC	3 cut(s)	394, 427, 481
Bsp19I	CCATGG	1 cut(s)	633
BspACI	CCGC	3 cut(s)	278, 575, 591
BspANI	GGCC	2 cut(s)	187, 368
BspCNI	CTCAG	2 cut(s)	156, 386
BspEI	TCCGGA	1 cut(s)	55
BspHI	TCATGA	1 cut(s)	400
BspLI	GGNNCC	2 cut(s)	113, 735
BspPI	GGATC	1 cut(s)	435
BspT107I	GGYRCC	1 cut(s)	111
BspTNI	GGTCTC	1 cut(s)	556
BsrI	ACTGG	2 cut(s)	213, 326
BssECI	CCNNGG	1 cut(s)	633
BssMI	GATC	3 cut(s)	394, 427, 481
BssNI	GRCGYC	1 cut(s)	112
BssT1I	CCWWGG	1 cut(s)	633
Bst4CI	ACNGT	2 cut(s)	478, 522
Bst6I	CTCTTC	2 cut(s)	146, 216
BstACI	GRCGYC	1 cut(s)	112
BstAPI	GCANNNNNTGC	1 cut(s)	587
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	2 cut(s)	164, 373
BstDSI	CCRYGG	1 cut(s)	633
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	3 cut(s)	397, 430, 484
BstMAI	GTCTC	1 cut(s)	556
BstMBI	GATC	3 cut(s)	394, 427, 481
BstMWI	GCNNNNNNNGC	5 cut(s)	169, 278, 458, 587, 626
BstV1I	GCAGC	2 cut(s)	86, 616
BstXI	CCANNNNNNTGG	1 cut(s)	522
BsuI	GTATCC	1 cut(s)	759
BsuRI	GGCC	2 cut(s)	187, 368
BtgI	CCRYGG	1 cut(s)	633
BtsIMutI	CAGTG	2 cut(s)	220, 319
Cac8I	GCNNGC	1 cut(s)	161
CciI	TCATGA	1 cut(s)	400
CfoI	GCGC	1 cut(s)	114
Csp6I	GTAC	3 cut(s)	45, 413, 775
CspCI	CAANNNNNGTGG	2 cut(s)	691, 726
CviAII	CATG	5 cut(s)	48, 401, 559, 634, 786
CviQI	GTAC	3 cut(s)	45, 413, 775
DdeI	CTNAG	2 cut(s)	164, 373
DinI	GGCGCC	1 cut(s)	113
DpnI	GATC	3 cut(s)	396, 429, 483
DpnII	GATC	3 cut(s)	394, 427, 481
Eam1104I	CTCTTC	2 cut(s)	146, 216
EarI	CTCTTC	2 cut(s)	146, 216
Eco130I	CCWWGG	1 cut(s)	633
Eco147I	AGGCCT	1 cut(s)	368
Eco31I	GGTCTC	1 cut(s)	556
Eco57I	CTGAAG	2 cut(s)	272, 609
EcoT14I	CCWWGG	1 cut(s)	633
EgeI	GGCGCC	1 cut(s)	113
EheI	GGCGCC	1 cut(s)	113
ErhI	CCWWGG	1 cut(s)	633
FaeI	CATG	5 cut(s)	51, 404, 562, 637, 789
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FatI	CATG	5 cut(s)	47, 400, 558, 633, 785
FbaI	TGATCA	2 cut(s)	394, 481
Fnu4HI	GCNGC	4 cut(s)	100, 279, 591, 630
Fsp4HI	GCNGC	4 cut(s)	100, 279, 591, 630
FspBI	CTAG	1 cut(s)	90
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	4 cut(s)	100, 279, 591, 630
GsaI	CCCAGC	2 cut(s)	135, 257
HaeII	RGCGCY	1 cut(s)	115
HaeIII	GGCC	2 cut(s)	187, 368
HapII	CCGG	1 cut(s)	56
HhaI	GCGC	1 cut(s)	114
Hin1I	GRCGYC	1 cut(s)	112
Hin1II	CATG	5 cut(s)	51, 404, 562, 637, 789
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HinfI	GANTC	3 cut(s)	52, 316, 377
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	4 cut(s)	239, 376, 427, 659
Hpy188III	TCNNGA	7 cut(s)	56, 196, 245, 337, 401, 506, 670
HpyAV	CCTTC	1 cut(s)	546
HpyCH4III	ACNGT	2 cut(s)	478, 522
HpyCH4V	TGCA	3 cut(s)	159, 467, 581
HpyF10VI	GCNNNNNNNGC	5 cut(s)	169, 278, 458, 587, 626
HpyF3I	CTNAG	2 cut(s)	164, 373
Hsp92I	GRCGYC	1 cut(s)	112
Hsp92II	CATG	5 cut(s)	51, 404, 562, 637, 789
HspAI	GCGC	1 cut(s)	112
KasI	GGCGCC	1 cut(s)	111
Kpn2I	TCCGGA	1 cut(s)	55
Ksp22I	TGATCA	2 cut(s)	394, 481
Kzo9I	GATC	3 cut(s)	394, 427, 481
LmnI	GCTCC	3 cut(s)	451, 733, 779
Lsp1109I	GCAGC	2 cut(s)	86, 616
MaeI	CTAG	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	3 cut(s)	396, 429, 483
MboI	GATC	3 cut(s)	394, 427, 481
MboII	GAAGA	7 cut(s)	49, 74, 163, 230, 233, 306, 416
MluCI	AATT	9 cut(s)	106, 175, 486, 495, 582, 642, 664, 694, 740
Mly113I	GGCGCC	1 cut(s)	112
MlyI	GAGTC	1 cut(s)	46
MroI	TCCGGA	1 cut(s)	55
MroXI	GAANNNNTTC	1 cut(s)	681
MseI	TTAA	2 cut(s)	312, 347
MspA1I	CMGCKG	1 cut(s)	629
MspI	CCGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	5 cut(s)	169, 278, 458, 587, 626
NarI	GGCGCC	1 cut(s)	112
NcoI	CCATGG	1 cut(s)	633
NdeII	GATC	3 cut(s)	394, 427, 481
NlaIII	CATG	5 cut(s)	51, 404, 562, 637, 789
NlaIV	GGNNCC	2 cut(s)	113, 735
PagI	TCATGA	1 cut(s)	400
PceI	AGGCCT	1 cut(s)	368
PdmI	GAANNNNTTC	1 cut(s)	681
PfeI	GAWTC	2 cut(s)	316, 377
PflMI	CCANNNNNTGG	1 cut(s)	761
PkrI	GCNGC	4 cut(s)	101, 280, 592, 631
PleI	GAGTC	1 cut(s)	46
PluTI	GGCGCC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	46
PspFI	CCCAGC	2 cut(s)	131, 253
PspN4I	GGNNCC	2 cut(s)	113, 735
PvuII	CAGCTG	1 cut(s)	629
RsaI	GTAC	3 cut(s)	46, 414, 776
RsaNI	GTAC	3 cut(s)	45, 413, 775
SaqAI	TTAA	2 cut(s)	312, 347
SatI	GCNGC	4 cut(s)	100, 279, 591, 630
Sau3AI	GATC	3 cut(s)	394, 427, 481
SchI	GAGTC	1 cut(s)	46
SfoI	GGCGCC	1 cut(s)	113
SmlI	CTYRAG	2 cut(s)	181, 335
SmoI	CTYRAG	2 cut(s)	181, 335
Sse9I	AATT	9 cut(s)	106, 175, 486, 495, 582, 642, 664, 694, 740
SseBI	AGGCCT	1 cut(s)	368
SsiI	CCGC	3 cut(s)	278, 575, 591
SspDI	GGCGCC	1 cut(s)	111
SspMI	CTAG	1 cut(s)	90
StuI	AGGCCT	1 cut(s)	368
StyI	CCWWGG	1 cut(s)	633
TaaI	ACNGT	2 cut(s)	478, 522
TaqI	TCGA	1 cut(s)	542
TasI	AATT	9 cut(s)	106, 175, 486, 495, 582, 642, 664, 694, 740
TauI	GCSGC	2 cut(s)	281, 593
TfiI	GAWTC	2 cut(s)	316, 377
Tru1I	TTAA	2 cut(s)	312, 347
Tru9I	TTAA	2 cut(s)	312, 347
TscAI	CASTG	2 cut(s)	220, 326
TseI	GCWGC	2 cut(s)	99, 629
TspDTI	ATGAA	5 cut(s)	39, 50, 368, 417, 528
TspRI	CASTG	2 cut(s)	220, 326
Van91I	CCANNNNNTGG	1 cut(s)	761
XapI	RAATTY	2 cut(s)	486, 740
XmnI	GAANNNNTTC	1 cut(s)	681
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.