FvH4_6g44400
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
34202751 .. 34204417
1667 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44400.t2

Sequence Viewer

Length: 1119 bp
ATGGGAAGAGCTCCTTGCTGTGACAAGAATGGACTCAAGAAAGGTCCATGGACTTCTGAAGAAGATGTTATTCTCGTCAACTATATCCAGGAACATGGTTCAGGCAATTGGCGCAACCTCCCAAAGAACGCAGGACTCCAAAGATGTGGCAAGAGTTGCCGGCTTAGATGGACTAACTACTTGAGGCCTGATATAAAGAGAGGAAGATTTTCCTTCGAAGAAGAAGAGACTATAATCCAACTTCATAGCATCCTCGGCAACAAGTGGTCAGCTATTGCAGCTCGCCTGCCAGGAAGAACTGACAATGAAATCAAGAACTACTGGAACACACACATCCGAAAAAGGCTTCTCCGAATGGGAATCGATCCAGTCACTCACGCTCCACGTCTCGATCTTCTTGACCTATCCTCCATTCTCGGCTCCTATGTCTCCAATATCAACCCAGCTGCAGCACTTCTCAACTTGTCAAACTTGTTAGGCACACAACAAGCCCTTAACGTCAATCCAGAACTGTTGCGGCTAGTAACCACTCTCTCATCACTGAAACAAGGAAACCCTCAAATGTTTTCACAAAACCAAAACCCAGTTTGCAATATTTCCCATGATTTGCAAAACCAATTAGTCCCATCGTTGCAGTCCAATCATCAGTTGCAAAATCTCTTCCAAGATGACTTTTCTCCAGACATAGCAAACCTAAAACAGCTCATGCAAATGATCAATACTGAAGGGAACTTACCCAACATGTCCAACTTCAGCAGCCCAGCTTCTTATTCCCCGGAAACCATAGTTCCTAATTCCAATATCGGTCCCGAAACAGCTGCTTCCAAACTGCCATGCTATGTACCTAGCAGTACTTCTAATCCTACTGCTCCCGAATTGGCAGGCCACTCATTTTTCCAATCACCTTTAAACAACAGCAATGTTAATCACGATTTCGGGTTTGATTCTGTTCTGTCGACGCCTCATTCATCAAGCCCTACTCCCTTGAACTCTTCCGGCACATACACCAACATAAACAGCAGCAGCACAGAGGATGAGAGAGATCTGGAAAGCTATTGCAGCAACCTGTTGAAGTTTGAGATCCCAGACAGTACCTTGGATATCAATGATTACATCTAG

Protein Analysis

373

Amino Acids

41.32

Weight (kDa)

5.85

Isoelectric Point (pI)

54.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 29 - 73 2.3e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 33 - 76 3.8e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014777)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 956
AciI CCGC 1 cut(s) 517
AclWI GGATC 2 cut(s) 359, 1075
AcuI CTGAAG 3 cut(s) 78, 736, 744
AcyI GRCGYC 1 cut(s) 959
AfaI GTAC 3 cut(s) 843, 853, 1093
AflIII ACRYGT 1 cut(s) 741
AgsI TTSAA 2 cut(s) 988, 1072
AjiI CACGTC 1 cut(s) 386
AjnI CCWGG 2 cut(s) 87, 289
AluBI AGCT 8 cut(s) 11, 272, 281, 446, 703, 764, 818, 1053
AluI AGCT 8 cut(s) 11, 272, 281, 446, 703, 764, 818, 1053
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 3 cut(s) 221, 392, 433
AlwI GGATC 2 cut(s) 359, 1075
AoxI GGCC 2 cut(s) 185, 883
ApeKI GCWGC 8 cut(s) 278, 446, 449, 756, 818, 1020, 1023, 1059
Asp700I GAANNNNTTC 1 cut(s) 208
AspLEI GCGC 1 cut(s) 114
AspS9I GGNCC 2 cut(s) 44, 806
AsuC2I CCSGG 1 cut(s) 776
AsuHPI GGTGA 1 cut(s) 894
AsuII TTCGAA 1 cut(s) 216
AvaII GGWCC 2 cut(s) 44, 806
BanII GRGCYC 1 cut(s) 13
BarI GAAGNNNNNNTAC 2 cut(s) 717, 749
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 8 cut(s) 290, 433, 461, 768, 805, 1032, 1035, 1071
BccI CCATC 2 cut(s) 162, 634
BcgI CGANNNNNNTGC 2 cut(s) 800, 834
BciT130I CCWGG 2 cut(s) 89, 291
BclI TGATCA 1 cut(s) 714
BcnI CCSGG 1 cut(s) 776
BcoDI GTCTC 3 cut(s) 221, 392, 433
BfaI CTAG 3 cut(s) 521, 846, 1117
BfmI CTRYAG 1 cut(s) 447
BglII AGATCT 1 cut(s) 1042
BisI GCNGC 9 cut(s) 279, 447, 450, 518, 757, 819, 1021, 1024, 1060
BlsI GCNGC 9 cut(s) 280, 448, 451, 519, 758, 820, 1022, 1025, 1061
BmcAI AGTACT 1 cut(s) 853
Bme1390I CCNGG 3 cut(s) 89, 291, 776
Bme18I GGWCC 2 cut(s) 44, 806
BmgBI CACGTC 1 cut(s) 386
BmgT120I GGNCC 2 cut(s) 44, 806
BmiI GGNNCC 2 cut(s) 421, 808
BmrFI CCNGG 3 cut(s) 89, 291, 776
BmrI ACTGGG 1 cut(s) 578
BmsI GCATC 1 cut(s) 258
BmuI ACTGGG 1 cut(s) 578
BpmI CTGGAG 1 cut(s) 663
Bpu14I TTCGAA 1 cut(s) 216
BpuEI CTTGAG 2 cut(s) 20, 202
BpuMI CCSGG 1 cut(s) 776
Bsa29I ATCGAT 1 cut(s) 363
BsaHI GRCGYC 1 cut(s) 959
BsaJI CCNNGG 4 cut(s) 47, 253, 774, 1095
BsaXI ACNNNNNCTCC 4 cut(s) 364, 392, 394, 422
Bse118I RCCGGY 1 cut(s) 159
Bse1I ACTGG 3 cut(s) 326, 368, 584
Bse3DI GCAATG 1 cut(s) 925
BseBI CCWGG 2 cut(s) 89, 291
BseCI ATCGAT 1 cut(s) 363
BseDI CCNNGG 4 cut(s) 47, 253, 774, 1095
BseGI GGATG 3 cut(s) 249, 333, 1039
BseMI GCAATG 1 cut(s) 925
BseNI ACTGG 3 cut(s) 326, 368, 584
BseXI GCAGC 8 cut(s) 290, 433, 461, 768, 805, 1032, 1035, 1071
BseYI CCCAGC 2 cut(s) 442, 760
BshFI GGCC 2 cut(s) 187, 885
BshVI ATCGAT 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 13
BsiSI CCGG 3 cut(s) 160, 776, 996
BslFI GGGAC 2 cut(s) 608, 792
BsmAI GTCTC 3 cut(s) 221, 392, 433
BsmBI CGTCTC 1 cut(s) 392
BsmFI GGGAC 2 cut(s) 608, 792
BsnI GGCC 2 cut(s) 187, 885
Bsp119I TTCGAA 1 cut(s) 216
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 5 cut(s) 364, 391, 714, 1042, 1080
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 1 cut(s) 517
BspANI GGCC 2 cut(s) 187, 885
BspDI ATCGAT 1 cut(s) 363
BspLI GGNNCC 2 cut(s) 421, 808
BspMAI CTGCAG 1 cut(s) 451
BspPI GGATC 2 cut(s) 359, 1075
BspT104I TTCGAA 1 cut(s) 216
BsrDI GCAATG 1 cut(s) 925
BsrFI RCCGGY 1 cut(s) 159
BsrI ACTGG 3 cut(s) 326, 368, 584
BssAI RCCGGY 1 cut(s) 159
BssECI CCNNGG 4 cut(s) 47, 253, 774, 1095
BssMI GATC 5 cut(s) 364, 391, 714, 1042, 1080
BssNI GRCGYC 1 cut(s) 959
BssT1I CCWWGG 2 cut(s) 47, 1095
Bst2UI CCWGG 2 cut(s) 89, 291
Bst4CI ACNGT 2 cut(s) 513, 1091
Bst6I CTCTTC 3 cut(s) 219, 665, 997
BstACI GRCGYC 1 cut(s) 959
BstAPI GCANNNNNTGC 1 cut(s) 156
BstBI TTCGAA 1 cut(s) 216
BstC8I GCNNGC 4 cut(s) 161, 283, 287, 883
BstDEI CTNAG 1 cut(s) 164
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 3 cut(s) 249, 333, 1039
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 5 cut(s) 367, 394, 717, 1045, 1083
BstMAI GTCTC 3 cut(s) 221, 392, 433
BstMBI GATC 5 cut(s) 364, 391, 714, 1042, 1080
BstMWI GCNNNNNNNGC 5 cut(s) 111, 156, 255, 278, 1059
BstNI CCWGG 2 cut(s) 89, 291
BstNSI RCATGY 1 cut(s) 745
BstSCI CCNGG 3 cut(s) 87, 289, 774
BstSFI CTRYAG 1 cut(s) 447
BstV1I GCAGC 8 cut(s) 290, 433, 461, 768, 805, 1032, 1035, 1071
BstX2I RGATCY 2 cut(s) 1042, 1080
BstXI CCANNNNNNTGG 2 cut(s) 95, 146
BstYI RGATCY 2 cut(s) 1042, 1080
Bsu15I ATCGAT 1 cut(s) 363
BsuRI GGCC 2 cut(s) 187, 885
BsuTUI ATCGAT 1 cut(s) 363
BtgI CCRYGG 1 cut(s) 47
BtrI CACGTC 1 cut(s) 386
BtsCI GGATG 3 cut(s) 249, 333, 1039
BtsIMutI CAGTG 1 cut(s) 539
Cac8I GCNNGC 4 cut(s) 161, 283, 287, 883
CfoI GCGC 1 cut(s) 114
Cfr10I RCCGGY 1 cut(s) 159
Cfr13I GGNCC 2 cut(s) 44, 806
ClaI ATCGAT 1 cut(s) 363
CseI GACGC 1 cut(s) 967
Csp6I GTAC 3 cut(s) 842, 852, 1092
CviAII CATG 6 cut(s) 48, 95, 602, 706, 742, 834
CviQI GTAC 3 cut(s) 842, 852, 1092
DdeI CTNAG 1 cut(s) 164
DpnI GATC 5 cut(s) 366, 393, 716, 1044, 1082
DpnII GATC 5 cut(s) 364, 391, 714, 1042, 1080
DraI TTTAAA 1 cut(s) 909
Eam1104I CTCTTC 3 cut(s) 219, 665, 997
EarI CTCTTC 3 cut(s) 219, 665, 997
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 2 cut(s) 47, 1095
Eco147I AGGCCT 1 cut(s) 187
Eco24I GRGCYC 1 cut(s) 13
Eco32I GATATC 1 cut(s) 1102
Eco47I GGWCC 2 cut(s) 44, 806
Eco53kI GAGCTC 1 cut(s) 11
Eco57I CTGAAG 3 cut(s) 78, 736, 744
EcoICRI GAGCTC 1 cut(s) 11
EcoRII CCWGG 2 cut(s) 87, 289
EcoRV GATATC 1 cut(s) 1102
EcoT14I CCWWGG 2 cut(s) 47, 1095
EcoT38I GRGCYC 1 cut(s) 13
ErhI CCWWGG 2 cut(s) 47, 1095
Esp3I CGTCTC 1 cut(s) 392
FaeI CATG 6 cut(s) 51, 98, 605, 709, 745, 837
FalI AAGNNNNNCTT 1 cut(s) 30
FaqI GGGAC 2 cut(s) 608, 792
FatI CATG 6 cut(s) 47, 94, 601, 705, 741, 833
FbaI TGATCA 1 cut(s) 714
FblI GTMKAC 1 cut(s) 956
Fnu4HI GCNGC 9 cut(s) 279, 447, 450, 518, 757, 819, 1021, 1024, 1060
FokI GGATG 3 cut(s) 236, 320, 1046
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 9 cut(s) 279, 447, 450, 518, 757, 819, 1021, 1024, 1060
FspBI CTAG 3 cut(s) 521, 846, 1117
GlaI GCGC 1 cut(s) 113
GluI GCNGC 9 cut(s) 279, 447, 450, 518, 757, 819, 1021, 1024, 1060
GsaI CCCAGC 2 cut(s) 446, 764
GsuI CTGGAG 1 cut(s) 663
HaeIII GGCC 2 cut(s) 187, 885
HapII CCGG 3 cut(s) 160, 776, 996
HgaI GACGC 1 cut(s) 967
HhaI GCGC 1 cut(s) 114
Hin1I GRCGYC 1 cut(s) 959
Hin1II CATG 6 cut(s) 51, 98, 605, 709, 745, 837
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HincII GTYRAC 2 cut(s) 79, 957
HindII GTYRAC 2 cut(s) 79, 957
HinfI GANTC 4 cut(s) 33, 135, 360, 944
HpaII CCGG 3 cut(s) 160, 776, 996
HphI GGTGA 1 cut(s) 894
Hpy166II GTNNAC 2 cut(s) 79, 957
Hpy188I TCNGA 3 cut(s) 58, 338, 353
Hpy8I GTNNAC 2 cut(s) 79, 957
Hpy99I CGWCG 1 cut(s) 961
HpyAV CCTTC 2 cut(s) 223, 719
HpyCH4III ACNGT 2 cut(s) 513, 1091
HpyCH4IV ACGT 2 cut(s) 385, 498
HpyCH4V TGCA 8 cut(s) 278, 449, 591, 610, 634, 652, 709, 1059
HpyF10VI GCNNNNNNNGC 5 cut(s) 111, 156, 255, 278, 1059
HpyF3I CTNAG 1 cut(s) 164
HpySE526I ACGT 2 cut(s) 385, 498
Hsp92I GRCGYC 1 cut(s) 959
Hsp92II CATG 6 cut(s) 51, 98, 605, 709, 745, 837
HspAI GCGC 1 cut(s) 112
KroI GCCGGC 1 cut(s) 159
KroNI GCCGGC 1 cut(s) 161
Ksp22I TGATCA 1 cut(s) 714
Kzo9I GATC 5 cut(s) 364, 391, 714, 1042, 1080
LmnI GCTCC 4 cut(s) 16, 385, 425, 874
Lsp1109I GCAGC 8 cut(s) 290, 433, 461, 768, 805, 1032, 1035, 1071
LweI GCATC 1 cut(s) 258
MaeI CTAG 3 cut(s) 521, 846, 1117
MaeII ACGT 2 cut(s) 385, 498
MaeIII GTNAC 3 cut(s) 20, 370, 523
MalI GATC 5 cut(s) 366, 393, 716, 1044, 1082
MboI GATC 5 cut(s) 364, 391, 714, 1042, 1080
MfeI CAATTG 1 cut(s) 106
MflI RGATCY 2 cut(s) 1042, 1080
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 4 cut(s) 106, 617, 793, 875
MlyI GAGTC 2 cut(s) 27, 129
MmeI TCCRAC 2 cut(s) 262, 771
MnlI CCTC 8 cut(s) 128, 177, 194, 263, 418, 567, 972, 1024
MroNI GCCGGC 1 cut(s) 159
MroXI GAANNNNTTC 1 cut(s) 208
MseI TTAA 3 cut(s) 495, 908, 924
MslI CAYNNNNRTG 1 cut(s) 710
MspA1I CMGCKG 2 cut(s) 446, 818
MspI CCGG 3 cut(s) 160, 776, 996
MspR9I CCNGG 3 cut(s) 89, 291, 776
MunI CAATTG 1 cut(s) 106
MvaI CCWGG 2 cut(s) 89, 291
MwoI GCNNNNNNNGC 5 cut(s) 111, 156, 255, 278, 1059
NaeI GCCGGC 1 cut(s) 161
NciI CCSGG 1 cut(s) 776
NcoI CCATGG 1 cut(s) 47
NdeII GATC 5 cut(s) 364, 391, 714, 1042, 1080
NgoMIV GCCGGC 1 cut(s) 159
NlaIII CATG 6 cut(s) 51, 98, 605, 709, 745, 837
NlaIV GGNNCC 2 cut(s) 421, 808
NmeAIII GCCGAG 2 cut(s) 234, 396
NmuCI GTSAC 2 cut(s) 20, 370
NspI RCATGY 1 cut(s) 745
NspV TTCGAA 1 cut(s) 216
PceI AGGCCT 1 cut(s) 187
PciI ACATGT 1 cut(s) 741
PdiI GCCGGC 1 cut(s) 161
PdmI GAANNNNTTC 1 cut(s) 208
PfeI GAWTC 2 cut(s) 360, 944
PfoI TCCNGGA 1 cut(s) 87
PkrI GCNGC 9 cut(s) 280, 448, 451, 519, 758, 820, 1022, 1025, 1061
PleI GAGTC 2 cut(s) 27, 129
PpsI GAGTC 2 cut(s) 27, 129
PscI ACATGT 1 cut(s) 741
Psp124BI GAGCTC 1 cut(s) 13
Psp6I CCWGG 2 cut(s) 87, 289
PspFI CCCAGC 2 cut(s) 442, 760
PspGI CCWGG 2 cut(s) 87, 289
PspN4I GGNNCC 2 cut(s) 421, 808
PspPI GGNCC 2 cut(s) 44, 806
PstI CTGCAG 1 cut(s) 451
PsuI RGATCY 2 cut(s) 1042, 1080
PvuII CAGCTG 2 cut(s) 446, 818
RsaI GTAC 3 cut(s) 843, 853, 1093
RsaNI GTAC 3 cut(s) 842, 852, 1092
RseI CAYNNNNRTG 1 cut(s) 710
SacI GAGCTC 1 cut(s) 13
SalI GTCGAC 1 cut(s) 955
SaqAI TTAA 3 cut(s) 495, 908, 924
SatI GCNGC 9 cut(s) 279, 447, 450, 518, 757, 819, 1021, 1024, 1060
Sau3AI GATC 5 cut(s) 364, 391, 714, 1042, 1080
Sau96I GGNCC 2 cut(s) 44, 806
ScaI AGTACT 1 cut(s) 853
SchI GAGTC 2 cut(s) 27, 129
ScrFI CCNGG 3 cut(s) 89, 291, 776
SduI GDGCHC 1 cut(s) 13
SfaNI GCATC 1 cut(s) 258
SfcI CTRYAG 1 cut(s) 447
SfuI TTCGAA 1 cut(s) 216
SinI GGWCC 2 cut(s) 44, 806
SmiMI CAYNNNNRTG 1 cut(s) 710
SmlI CTYRAG 2 cut(s) 35, 181
SmoI CTYRAG 2 cut(s) 35, 181
Sse9I AATT 4 cut(s) 106, 617, 793, 875
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 1 cut(s) 517
SspI AATATT 1 cut(s) 595
SspMI CTAG 3 cut(s) 521, 846, 1117
SstI GAGCTC 1 cut(s) 13
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 3 cut(s) 87, 289, 774
StyI CCWWGG 2 cut(s) 47, 1095
TaaI ACNGT 2 cut(s) 513, 1091
TaiI ACGT 2 cut(s) 388, 501
TaqI TCGA 4 cut(s) 216, 363, 390, 956
TaqII GACCGA 1 cut(s) 794
TasI AATT 4 cut(s) 106, 617, 793, 875
TatI WGTACW 1 cut(s) 851
TauI GCSGC 1 cut(s) 520
TfiI GAWTC 2 cut(s) 360, 944
Tru1I TTAA 3 cut(s) 495, 908, 924
Tru9I TTAA 3 cut(s) 495, 908, 924
TscAI CASTG 1 cut(s) 546
TseFI GTSAC 2 cut(s) 20, 370
TseI GCWGC 8 cut(s) 278, 446, 449, 756, 818, 1020, 1023, 1059
Tsp45I GTSAC 2 cut(s) 20, 370
TspDTI ATGAA 3 cut(s) 233, 321, 957
TspRI CASTG 1 cut(s) 546
VpaK11BI GGWCC 2 cut(s) 44, 806
XceI RCATGY 1 cut(s) 745
XmiI GTMKAC 1 cut(s) 956
XmnI GAANNNNTTC 1 cut(s) 208
XspI CTAG 3 cut(s) 521, 846, 1117
ZrmI AGTACT 1 cut(s) 853
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.