Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0014777

Physical Location & Seq

Genomic Coordinates Forward (+)

7052195 .. 7053794

Gene Structure 1600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1086000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGACTCAAGAAAAGGTCCATGGACAACTGAAGAAGATGCCATGCTAGTGAATTATATTCAGAAGCATGGACCTGGAAATTGGAGAAACCTTCCAAAGAATGCAGGACTCCAGAGATGCGGGAAGAGTTGCCGCCTCAGATGGACTAACTACCTTAGACCTGATATAAAGAGAGGAAGGTTCTCCTTTGAAGAAGAAGAGACTATAATCCAACTACATAGCATCCTTGGAAACAAGTGGTCAGCTATTGCTGCTCGCTTGCCAGGAAGGACAGACAATGAAATAAAAAACTACTGGAACACGCACATCCGAAAAAGGCTCCTTCGAATGGGAATTGATCCCGTGACTCATGCTCCACGCATCGATCTTCTTGATCTGTCCTCAATTCTCAGCTCATATGTGTGCAACAACCCAGCTGCTGCACTACTCAATTTGTCAAACTTGTTGAATAGTACCCATCAGCGACAACCACTTGTTAATCCAGAAATGTTAAGGCTAGCAACAAGTCTGTTATCAATCAAACAAGCAAACCCGGAAATGTGTTCCCAAAATTATAATCTCCATCAAAACCAGATTTCCAATTCTCAGGAACAAAATAATCAAGTTCTCCCACCTTTACAATCCAATGATCAGTTTCAAAATCTCATCCAAGGGGGAGACTTTTCTGCTGACATGGCAAAACATCTGATGCAACAGATCAATGTGGAAGGTTTCTCACCAAACATGACCAACTTGAGCTGCCCCCTTTCCCAAGAAAACATAGTCCCCCCGAATTTGAGTGCCGATCATCATCAAACAGCTGTCTCCCAAGCAAACTATGTGCCTTGCAGTACTACTTCTGGTAACCCTGGTCCTGATTTTCCGGAAAATTCATATTTCCAATCTTTTAACTACAACAAGAACCACGATTTCAGCTTCGATTCAGTTATGTCAACGCCTTATTCGAGCCCGACTCCTTTGAATTCATCAGGTACATACATAAACAGCAGCACAGAGGATGAGAAGGAAAGCTATTGCAGCAGCTGGTTAAAGTTTGAAATCCCAGAGAGTACTTTGGACATCAGTGATATCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009825 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016049 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0040007 GO:0042221 GO:0042335 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080091 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

359

Amino Acids

40.47

Weight (kDa)

5.93

Isoelectric Point (pI)

50.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	5 - 52	1.6e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	8 - 66	6.6e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	58 - 102	2.6e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	62 - 105	4.1e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014777)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g44400 FvH4_6g44400
malus_domestica	MD09G1097700.v1.1 MD17G1086000.v1.1
prunus_persica	Prupe.3G228500_v2.0.a1
pyrus_communis	pycom09g02180 pycom17g08350
rosa_chinensis	RchiOBHm_Chr2g0161391
rosa_multiflora	Rmu_sc0004030.1_g000007 Rmu_sc0010382.1_g000002
rosa_roxburghii	Rroxscaffold_2G00088880
rosa_rugosa	Rorug02G0488700
rosa_samantha	Rh2AG555100 Rh2BG568400 Rh2CG539000 Rh2DG578000
rosa_wichuraiana	Rw2G045930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	555
AccIII	TCCGGA	1 cut(s)	862
AciI	CCGC	2 cut(s)	120, 133
AclWI	GGATC	1 cut(s)	332
AcsI	RAATTY	3 cut(s)	772, 868, 961
AcuI	CTGAAG	1 cut(s)	51
AfaI	GTAC	4 cut(s)	454, 832, 973, 1051
AfiI	CCNNNNNNNGG	1 cut(s)	328
AgsI	TTSAA	5 cut(s)	191, 448, 638, 961, 1037
AjnI	CCWGG	3 cut(s)	73, 262, 847
AluBI	AGCT	8 cut(s)	245, 393, 416, 738, 800, 915, 1011, 1023
AluI	AGCT	8 cut(s)	245, 393, 416, 738, 800, 915, 1011, 1023
Alw26I	GTCTC	3 cut(s)	194, 651, 808
AlwI	GGATC	1 cut(s)	332
AlwNI	CAGNNNCTG	2 cut(s)	419, 1023
Aor13HI	TCCGGA	1 cut(s)	862
ApeKI	GCWGC	7 cut(s)	251, 416, 419, 738, 987, 1017, 1020
ApoI	RAATTY	3 cut(s)	772, 868, 961
AspS9I	GGNCC	3 cut(s)	17, 71, 851
AsuC2I	CCSGG	1 cut(s)	533
AsuHPI	GGTGA	1 cut(s)	708
AsuII	TTCGAA	1 cut(s)	325
AsuNHI	GCTAGC	1 cut(s)	496
AvaII	GGWCC	3 cut(s)	17, 71, 851
BanII	GRGCYC	1 cut(s)	950
BbvI	GCAGC	7 cut(s)	238, 403, 406, 725, 999, 1029, 1032
BccI	CCATC	3 cut(s)	135, 465, 570
BciT130I	CCWGG	3 cut(s)	75, 264, 849
BclI	TGATCA	1 cut(s)	628
BcnI	CCSGG	1 cut(s)	533
BcoDI	GTCTC	3 cut(s)	194, 651, 808
BfaI	CTAG	2 cut(s)	47, 497
BisI	GCNGC	8 cut(s)	133, 252, 417, 420, 739, 988, 1018, 1021
BlsI	GCNGC	8 cut(s)	134, 253, 418, 421, 740, 989, 1019, 1022
BmcAI	AGTACT	2 cut(s)	832, 1051
Bme1390I	CCNGG	4 cut(s)	75, 264, 533, 849
Bme18I	GGWCC	3 cut(s)	17, 71, 851
BmgT120I	GGNCC	3 cut(s)	17, 71, 851
BmiI	GGNNCC	1 cut(s)	320
BmrFI	CCNGG	4 cut(s)	75, 264, 533, 849
BmsI	GCATC	5 cut(s)	28, 107, 231, 369, 678
BmtI	GCTAGC	1 cut(s)	500
BplI	GAGNNNNNCTC	2 cut(s)	937, 969
BpmI	CTGGAG	1 cut(s)	95
Bpu14I	TTCGAA	1 cut(s)	325
BpuEI	CTTGAG	1 cut(s)	754
BpuMI	CCSGG	1 cut(s)	533
Bsa29I	ATCGAT	1 cut(s)	363
BsaBI	GATNNNNATC	1 cut(s)	789
BsaJI	CCNNGG	4 cut(s)	20, 226, 649, 847
BsaWI	WCCGGW	1 cut(s)	862
BsaXI	ACNNNNNCTCC	2 cut(s)	337, 367
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse1I	ACTGG	1 cut(s)	299
Bse8I	GATNNNNATC	1 cut(s)	789
BseAI	TCCGGA	1 cut(s)	862
BseBI	CCWGG	3 cut(s)	75, 264, 849
BseCI	ATCGAT	1 cut(s)	363
BseDI	CCNNGG	4 cut(s)	20, 226, 649, 847
BseGI	GGATG	4 cut(s)	222, 306, 645, 1003
BseJI	GATNNNNATC	1 cut(s)	789
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMII	CTCAG	3 cut(s)	151, 403, 599
BseNI	ACTGG	1 cut(s)	299
BseXI	GCAGC	7 cut(s)	238, 403, 406, 725, 999, 1029, 1032
BseYI	CCCAGC	1 cut(s)	412
BsgI	GTGCAG	1 cut(s)	405
BshVI	ATCGAT	1 cut(s)	363
BsiSI	CCGG	2 cut(s)	533, 863
BslFI	GGGAC	1 cut(s)	749
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmAI	GTCTC	3 cut(s)	194, 651, 808
BsmFI	GGGAC	1 cut(s)	749
BsmI	GAATGC	1 cut(s)	106
Bsp119I	TTCGAA	1 cut(s)	325
Bsp1286I	GDGCHC	1 cut(s)	950
Bsp13I	TCCGGA	1 cut(s)	862
Bsp143I	GATC	6 cut(s)	337, 364, 373, 628, 696, 784
Bsp19I	CCATGG	1 cut(s)	20
BspACI	CCGC	2 cut(s)	120, 133
BspCNI	CTCAG	3 cut(s)	150, 402, 598
BspDI	ATCGAT	1 cut(s)	363
BspEI	TCCGGA	1 cut(s)	862
BspLI	GGNNCC	1 cut(s)	320
BspOI	GCTAGC	1 cut(s)	500
BspPI	GGATC	1 cut(s)	332
BspT104I	TTCGAA	1 cut(s)	325
BsrI	ACTGG	1 cut(s)	299
BssECI	CCNNGG	4 cut(s)	20, 226, 649, 847
BssMI	GATC	6 cut(s)	337, 364, 373, 628, 696, 784
BssT1I	CCWWGG	3 cut(s)	20, 226, 649
Bst2UI	CCWGG	3 cut(s)	75, 264, 849
Bst6I	CTCTTC	2 cut(s)	119, 192
BstBI	TTCGAA	1 cut(s)	325
BstC8I	GCNNGC	3 cut(s)	256, 260, 498
BstDEI	CTNAG	4 cut(s)	137, 155, 389, 585
BstDSI	CCRYGG	1 cut(s)	20
BstEII	GGTNACC	1 cut(s)	842
BstF5I	GGATG	4 cut(s)	222, 306, 645, 1003
BstKTI	GATC	6 cut(s)	340, 367, 376, 631, 699, 787
BstMAI	GTCTC	3 cut(s)	194, 651, 808
BstMBI	GATC	6 cut(s)	337, 364, 373, 628, 696, 784
BstMWI	GCNNNNNNNGC	3 cut(s)	251, 674, 1017
BstNI	CCWGG	3 cut(s)	75, 264, 849
BstPI	GGTNACC	1 cut(s)	842
BstSCI	CCNGG	4 cut(s)	73, 262, 531, 847
BstV1I	GCAGC	7 cut(s)	238, 403, 406, 725, 999, 1029, 1032
Bsu15I	ATCGAT	1 cut(s)	363
BsuTUI	ATCGAT	1 cut(s)	363
BtgI	CCRYGG	1 cut(s)	20
BtsCI	GGATG	4 cut(s)	222, 306, 645, 1003
BtsIMutI	CAGTG	1 cut(s)	1069
Cac8I	GCNNGC	3 cut(s)	256, 260, 498
CaiI	CAGNNNCTG	2 cut(s)	419, 1023
Cfr13I	GGNCC	3 cut(s)	17, 71, 851
ClaI	ATCGAT	1 cut(s)	363
Csp6I	GTAC	4 cut(s)	453, 831, 972, 1050
CviAII	CATG	7 cut(s)	21, 43, 68, 350, 673, 724, 1072
CviQI	GTAC	4 cut(s)	453, 831, 972, 1050
DdeI	CTNAG	4 cut(s)	137, 155, 389, 585
DpnI	GATC	6 cut(s)	339, 366, 375, 630, 698, 786
DpnII	GATC	6 cut(s)	337, 364, 373, 628, 696, 784
Eam1104I	CTCTTC	2 cut(s)	119, 192
EarI	CTCTTC	2 cut(s)	119, 192
Eco130I	CCWWGG	3 cut(s)	20, 226, 649
Eco24I	GRGCYC	1 cut(s)	950
Eco32I	GATATC	1 cut(s)	1069
Eco47I	GGWCC	3 cut(s)	17, 71, 851
Eco57I	CTGAAG	1 cut(s)	51
Eco91I	GGTNACC	1 cut(s)	842
EcoO65I	GGTNACC	1 cut(s)	842
EcoRI	GAATTC	1 cut(s)	961
EcoRII	CCWGG	3 cut(s)	73, 262, 847
EcoRV	GATATC	1 cut(s)	1069
EcoT14I	CCWWGG	3 cut(s)	20, 226, 649
EcoT38I	GRGCYC	1 cut(s)	950
ErhI	CCWWGG	3 cut(s)	20, 226, 649
FaeI	CATG	7 cut(s)	24, 46, 71, 353, 676, 727, 1075
FaqI	GGGAC	1 cut(s)	749
FatI	CATG	7 cut(s)	20, 42, 67, 349, 672, 723, 1071
FauI	CCCGC	1 cut(s)	113
FauNDI	CATATG	1 cut(s)	397
FbaI	TGATCA	1 cut(s)	628
Fnu4HI	GCNGC	8 cut(s)	133, 252, 417, 420, 739, 988, 1018, 1021
FokI	GGATG	4 cut(s)	209, 293, 632, 1010
FriOI	GRGCYC	1 cut(s)	950
Fsp4HI	GCNGC	8 cut(s)	133, 252, 417, 420, 739, 988, 1018, 1021
FspBI	CTAG	2 cut(s)	47, 497
GluI	GCNGC	8 cut(s)	133, 252, 417, 420, 739, 988, 1018, 1021
GsaI	CCCAGC	1 cut(s)	416
GsuI	CTGGAG	1 cut(s)	95
HapII	CCGG	2 cut(s)	533, 863
Hin1II	CATG	7 cut(s)	24, 46, 71, 353, 676, 727, 1075
HincII	GTYRAC	1 cut(s)	933
HindII	GTYRAC	1 cut(s)	933
HinfI	GANTC	5 cut(s)	5, 108, 346, 920, 952
HpaII	CCGG	2 cut(s)	533, 863
HphI	GGTGA	1 cut(s)	708
Hpy166II	GTNNAC	1 cut(s)	933
Hpy188I	TCNGA	4 cut(s)	63, 140, 311, 687
Hpy188III	TCNNGA	7 cut(s)	9, 112, 371, 482, 587, 854, 863
Hpy8I	GTNNAC	1 cut(s)	933
HpyAV	CCTTC	6 cut(s)	101, 171, 261, 332, 701, 997
HpyCH4V	TGCA	6 cut(s)	104, 405, 422, 691, 828, 1017
HpyF10VI	GCNNNNNNNGC	3 cut(s)	251, 674, 1017
HpyF3I	CTNAG	4 cut(s)	137, 155, 389, 585
Hsp92II	CATG	7 cut(s)	24, 46, 71, 353, 676, 727, 1075
Kpn2I	TCCGGA	1 cut(s)	862
Ksp22I	TGATCA	1 cut(s)	628
Kzo9I	GATC	6 cut(s)	337, 364, 373, 628, 696, 784
LmnI	GCTCC	2 cut(s)	324, 358
Lsp1109I	GCAGC	7 cut(s)	238, 403, 406, 725, 999, 1029, 1032
LweI	GCATC	5 cut(s)	28, 107, 231, 369, 678
MaeI	CTAG	2 cut(s)	47, 497
MaeIII	GTNAC	2 cut(s)	343, 842
MalI	GATC	6 cut(s)	339, 366, 375, 630, 698, 786
MboI	GATC	6 cut(s)	337, 364, 373, 628, 696, 784
MboII	GAAGA	7 cut(s)	44, 47, 136, 203, 206, 209, 359
MhlI	GDGCHC	1 cut(s)	950
MlyI	GAGTC	3 cut(s)	102, 340, 946
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	4 cut(s)	146, 167, 391, 988
MroI	TCCGGA	1 cut(s)	862
MseI	TTAA	4 cut(s)	477, 491, 888, 1028
MslI	CAYNNNNRTG	2 cut(s)	47, 400
MspA1I	CMGCKG	3 cut(s)	416, 800, 1023
MspI	CCGG	2 cut(s)	533, 863
MspR9I	CCNGG	4 cut(s)	75, 264, 533, 849
Mva1269I	GAATGC	1 cut(s)	106
MvaI	CCWGG	3 cut(s)	75, 264, 849
MwoI	GCNNNNNNNGC	3 cut(s)	251, 674, 1017
NciI	CCSGG	1 cut(s)	533
NcoI	CCATGG	1 cut(s)	20
NdeI	CATATG	1 cut(s)	397
NdeII	GATC	6 cut(s)	337, 364, 373, 628, 696, 784
NheI	GCTAGC	1 cut(s)	496
NlaIII	CATG	7 cut(s)	24, 46, 71, 353, 676, 727, 1075
NlaIV	GGNNCC	1 cut(s)	320
NmuCI	GTSAC	1 cut(s)	343
NspV	TTCGAA	1 cut(s)	325
PcsI	WCGNNNNNNNCGW	1 cut(s)	941
PctI	GAATGC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	920
PkrI	GCNGC	8 cut(s)	134, 253, 418, 421, 740, 989, 1019, 1022
PleI	GAGTC	3 cut(s)	102, 340, 946
PpsI	GAGTC	3 cut(s)	102, 340, 946
PsiI	TTATAA	1 cut(s)	555
Psp6I	CCWGG	3 cut(s)	73, 262, 847
PspEI	GGTNACC	1 cut(s)	842
PspFI	CCCAGC	1 cut(s)	412
PspGI	CCWGG	3 cut(s)	73, 262, 847
PspN4I	GGNNCC	1 cut(s)	320
PspPI	GGNCC	3 cut(s)	17, 71, 851
PstNI	CAGNNNCTG	2 cut(s)	419, 1023
PvuII	CAGCTG	3 cut(s)	416, 800, 1023
RsaI	GTAC	4 cut(s)	454, 832, 973, 1051
RsaNI	GTAC	4 cut(s)	453, 831, 972, 1050
RseI	CAYNNNNRTG	2 cut(s)	47, 400
SaqAI	TTAA	4 cut(s)	477, 491, 888, 1028
SatI	GCNGC	8 cut(s)	133, 252, 417, 420, 739, 988, 1018, 1021
Sau3AI	GATC	6 cut(s)	337, 364, 373, 628, 696, 784
Sau96I	GGNCC	3 cut(s)	17, 71, 851
ScaI	AGTACT	2 cut(s)	832, 1051
SchI	GAGTC	3 cut(s)	102, 340, 946
ScrFI	CCNGG	4 cut(s)	75, 264, 533, 849
SduI	GDGCHC	1 cut(s)	950
SfaNI	GCATC	5 cut(s)	28, 107, 231, 369, 678
SfuI	TTCGAA	1 cut(s)	325
SinI	GGWCC	3 cut(s)	17, 71, 851
SmiMI	CAYNNNNRTG	2 cut(s)	47, 400
SmlI	CTYRAG	2 cut(s)	7, 733
SmoI	CTYRAG	2 cut(s)	7, 733
SsiI	CCGC	2 cut(s)	120, 133
SspMI	CTAG	2 cut(s)	47, 497
StyD4I	CCNGG	4 cut(s)	73, 262, 531, 847
StyI	CCWWGG	3 cut(s)	20, 226, 649
TaqI	TCGA	4 cut(s)	325, 363, 918, 944
TatI	WGTACW	2 cut(s)	830, 1049
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	1 cut(s)	920
Tru1I	TTAA	4 cut(s)	477, 491, 888, 1028
Tru9I	TTAA	4 cut(s)	477, 491, 888, 1028
TscAI	CASTG	1 cut(s)	1069
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	7 cut(s)	251, 416, 419, 738, 987, 1017, 1020
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	3 cut(s)	294, 861, 954
TspRI	CASTG	1 cut(s)	1069
VpaK11BI	GGWCC	3 cut(s)	17, 71, 851
XapI	RAATTY	3 cut(s)	772, 868, 961
XspI	CTAG	2 cut(s)	47, 497
ZrmI	AGTACT	2 cut(s)	832, 1051

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.