pycom09g02180
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
1644211 .. 1645918
1708 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g02180.1

Sequence Viewer

Length: 1353 bp
ATGATGCCCTTAAATTTGCATGTGCCGGCGCCAAATCCCTTTGACTTCAAAAATGTTTCTCAAACTTCTTCCCTTCCACTATATAAATGCCTCATCTCTTCCCTTTTGATCAGCGACTTGAGCTACAATCTAATTCCAAAGTCACAAAAGTACCTTTTTTCTCTCCTAGTAAGTACCTTTACAAACTCATCTCTCCACCTCCACCTCCACATCAAGTTAGATAACAGCACCAGCTGCGCCACTGACAATATGGGAAGAGCACCTTGCTGTGATAAAAATGGACTCAAGAAAGGTCCATGGACAACCGAAGAAGATGCCATGCTCGTCAATTATATTCAGAAGCATGGACCGGGAAATTGGCGAAACCTTCCAAAGAATGCAGGACTGCAGAGATGCGGGAAGAGTTGCCGCCTTAGATGGACTAACTACCTGAGACCAGATATAAAGAGAGGAAGGATCTCCTTTGAGGAAGAAGAGACTATAATCCAACTACATAGCATTCTTGGAAACAAATGGTCAGCTATTGCAGCTCGCTTGCCAGGAAGGACGGACAATGAAATCAAGAACCATTGGAACACTCACATCCGAAAAAGGCTCCTCCGAATGGGAATCGATCCAGTGACTCATGCTCCGCGCATCGATTTTCTTGACCTGTCCTCAATTCTCAGCTCATATGTGTGCAACAACCCAGCTGCTGCACTTCTCAATTTATCGAACTTGTTGAATAGTACACAGCAGCAGCAACCACTTGTTAATCCAGAACTGTTGAGGCTAGCAACAAGTCTGCTATCGATCAAACAAGAAAACCCGGAATTGTGTCCCCAAAATTATACTCTCCATCAAAACCAGATTTGCAGTTCTCAAGAACAAAATAATCAAGTTCTCCCACCTTTGCAATCCAATGATCAGTTCCAAAATCTCATCCAAGGAGGAGACTTTTCTGCCGACATGGCAAAACATCTGATGCAACAGATCAATGTGGAAGCCTATTCACCAAACATGAACAACTTGAGCTGCCCCCTTTCCCAAGAAAATATAGTCCCTTCGAATTTAAGCACCGATCACCATCAAACAGCTGTTTCCCAACCAAACTATGTGCCTTGCAGTACTACTTCTAGTAGCCCCAATCCTGATTTTCCGGAAAATTCATATTTCCAATCATTAAACTACAACAAGAACCATAATTTAAGCTTCGATTCTGTTATGTCAACGCCTTATTCAAGCCCGACTCCTTTGAATTCATCAGGCACATACATAAACAGCAGCACAGAGGATGAGAAGGAAAGCTACTGCAGCAGCTGGTTAAAGTTTGAAATCCCAGAGAGTACTGTGGACATTAGTGATATCATGTAG

Protein Analysis

451

Amino Acids

50.62

Weight (kDa)

6.39

Isoelectric Point (pI)

52.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 97 - 144 2.2e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 100 - 159 4.2e-10 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 150 - 194 2.8e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 156 - 197 6.7e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014777)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 28
AccII CGCG 1 cut(s) 634
AccIII TCCGGA 1 cut(s) 1138
AciI CCGC 3 cut(s) 396, 409, 632
AclWI GGATC 2 cut(s) 464, 608
AcsI RAATTY 4 cut(s) 13, 1048, 1144, 1237
AcyI GRCGYC 1 cut(s) 29
AfaI GTAC 5 cut(s) 152, 175, 730, 1108, 1327
AfiI CCNNNNNNNGG 1 cut(s) 604
AgsI TTSAA 5 cut(s) 49, 724, 1221, 1237, 1313
AjnI CCWGG 1 cut(s) 538
AjuI GAANNNNNNNTTGG 2 cut(s) 893, 925
Alw21I GWGCWC 1 cut(s) 262
Alw26I GTCTC 3 cut(s) 427, 470, 927
AlwI GGATC 2 cut(s) 464, 608
AlwNI CAGNNNCTG 2 cut(s) 695, 1299
Aor13HI TCCGGA 1 cut(s) 1138
ApoI RAATTY 4 cut(s) 13, 1048, 1144, 1237
AspLEI GCGC 3 cut(s) 31, 239, 636
AspS9I GGNCC 2 cut(s) 293, 347
AsuC2I CCSGG 2 cut(s) 351, 809
AsuHPI GGTGA 2 cut(s) 984, 1055
AsuII TTCGAA 1 cut(s) 1046
AsuNHI GCTAGC 1 cut(s) 772
AvaII GGWCC 2 cut(s) 293, 347
BaeI ACNNNNGTAYC 2 cut(s) 134, 167
BanI GGYRCC 1 cut(s) 28
BarI GAAGNNNNNNTAC 2 cut(s) 1271, 1303
Bbv12I GWGCWC 1 cut(s) 262
BccI CCATC 3 cut(s) 411, 846, 1074
BcgI CGANNNNNNTGC 2 cut(s) 296, 330
BciT130I CCWGG 1 cut(s) 540
BclI TGATCA 2 cut(s) 108, 904
BcnI CCSGG 2 cut(s) 351, 809
BcoDI GTCTC 3 cut(s) 427, 470, 927
BfaI CTAG 3 cut(s) 167, 773, 1116
BfmI CTRYAG 2 cut(s) 386, 1291
BfoI RGCGCY 1 cut(s) 32
BglI GCCNNNNNGGC 1 cut(s) 950
BmcAI AGTACT 2 cut(s) 1108, 1327
Bme1390I CCNGG 3 cut(s) 351, 540, 809
Bme18I GGWCC 2 cut(s) 293, 347
BmgT120I GGNCC 2 cut(s) 293, 347
BmiI GGNNCC 2 cut(s) 30, 596
BmrFI CCNGG 3 cut(s) 351, 540, 809
BmsI GCATC 4 cut(s) 304, 383, 645, 954
BmtI GCTAGC 1 cut(s) 776
Bpu14I TTCGAA 1 cut(s) 1046
BpuEI CTTGAG 4 cut(s) 139, 269, 846, 1030
BpuMI CCSGG 2 cut(s) 351, 809
Bsa29I ATCGAT 3 cut(s) 612, 639, 791
BsaBI GATNNNNATC 1 cut(s) 1065
BsaHI GRCGYC 1 cut(s) 29
BsaI GGTCTC 1 cut(s) 427
BsaJI CCNNGG 2 cut(s) 296, 925
BsaWI WCCGGW 1 cut(s) 1138
BsaXI ACNNNNNCTCC 2 cut(s) 613, 643
Bsc4I CCNNNNNNNGG 1 cut(s) 604
Bse118I RCCGGY 1 cut(s) 25
Bse1I ACTGG 1 cut(s) 617
Bse8I GATNNNNATC 1 cut(s) 1065
BseAI TCCGGA 1 cut(s) 1138
BseBI CCWGG 1 cut(s) 540
BseCI ATCGAT 3 cut(s) 612, 639, 791
BseDI CCNNGG 2 cut(s) 296, 925
BseGI GGATG 3 cut(s) 582, 921, 1279
BseJI GATNNNNATC 1 cut(s) 1065
BseLI CCNNNNNNNGG 1 cut(s) 604
BseMII CTCAG 2 cut(s) 422, 679
BseNI ACTGG 1 cut(s) 617
BseRI GAGGAG 2 cut(s) 587, 945
BseYI CCCAGC 1 cut(s) 688
BsgI GTGCAG 1 cut(s) 681
Bsh1236I CGCG 1 cut(s) 634
BshNI GGYRCC 1 cut(s) 28
BshVI ATCGAT 3 cut(s) 612, 639, 791
BsiHKAI GWGCWC 1 cut(s) 262
BsiSI CCGG 4 cut(s) 26, 350, 809, 1139
BslFI GGGAC 2 cut(s) 804, 1025
BslI CCNNNNNNNGG 1 cut(s) 604
BsmAI GTCTC 3 cut(s) 427, 470, 927
BsmFI GGGAC 2 cut(s) 804, 1025
BsmI GAATGC 2 cut(s) 382, 498
Bso31I GGTCTC 1 cut(s) 427
Bsp119I TTCGAA 1 cut(s) 1046
Bsp1286I GDGCHC 1 cut(s) 262
Bsp13I TCCGGA 1 cut(s) 1138
Bsp143I GATC 7 cut(s) 108, 456, 613, 792, 904, 972, 1060
Bsp19I CCATGG 1 cut(s) 296
BspACI CCGC 3 cut(s) 396, 409, 632
BspCNI CTCAG 2 cut(s) 423, 678
BspDI ATCGAT 3 cut(s) 612, 639, 791
BspEI TCCGGA 1 cut(s) 1138
BspFNI CGCG 1 cut(s) 634
BspLI GGNNCC 2 cut(s) 30, 596
BspMAI CTGCAG 2 cut(s) 390, 1295
BspOI GCTAGC 1 cut(s) 776
BspPI GGATC 2 cut(s) 464, 608
BspQI GCTCTTC 1 cut(s) 250
BspT104I TTCGAA 1 cut(s) 1046
BspT107I GGYRCC 1 cut(s) 28
BspTNI GGTCTC 1 cut(s) 427
BsrFI RCCGGY 1 cut(s) 25
BsrI ACTGG 1 cut(s) 617
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 2 cut(s) 296, 925
BssMI GATC 7 cut(s) 108, 456, 613, 792, 904, 972, 1060
BssNI GRCGYC 1 cut(s) 29
BssT1I CCWWGG 2 cut(s) 296, 925
Bst2UI CCWGG 1 cut(s) 540
Bst4CI ACNGT 2 cut(s) 765, 1330
Bst6I CTCTTC 4 cut(s) 103, 250, 395, 468
BstACI GRCGYC 1 cut(s) 29
BstAPI GCANNNNNTGC 1 cut(s) 234
BstBI TTCGAA 1 cut(s) 1046
BstC8I GCNNGC 4 cut(s) 27, 532, 536, 774
BstDEI CTNAG 3 cut(s) 413, 431, 665
BstDSI CCRYGG 1 cut(s) 296
BstF5I GGATG 3 cut(s) 582, 921, 1279
BstFNI CGCG 1 cut(s) 634
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 3 cut(s) 31, 239, 636
BstKTI GATC 7 cut(s) 111, 459, 616, 795, 907, 975, 1063
BstMAI GTCTC 3 cut(s) 427, 470, 927
BstMBI GATC 7 cut(s) 108, 456, 613, 792, 904, 972, 1060
BstMWI GCNNNNNNNGC 5 cut(s) 120, 234, 527, 950, 1293
BstNI CCWGG 1 cut(s) 540
BstNSI RCATGY 1 cut(s) 23
BstSCI CCNGG 3 cut(s) 349, 538, 807
BstSFI CTRYAG 2 cut(s) 386, 1291
BstUI CGCG 1 cut(s) 634
BstX2I RGATCY 1 cut(s) 456
BstYI RGATCY 1 cut(s) 456
Bsu15I ATCGAT 3 cut(s) 612, 639, 791
BsuTUI ATCGAT 3 cut(s) 612, 639, 791
BtgI CCRYGG 1 cut(s) 296
BtsCI GGATG 3 cut(s) 582, 921, 1279
BtsIMutI CAGTG 2 cut(s) 240, 624
Cac8I GCNNGC 4 cut(s) 27, 532, 536, 774
CaiI CAGNNNCTG 2 cut(s) 695, 1299
CfoI GCGC 3 cut(s) 31, 239, 636
Cfr10I RCCGGY 1 cut(s) 25
Cfr13I GGNCC 2 cut(s) 293, 347
ClaI ATCGAT 3 cut(s) 612, 639, 791
Csp6I GTAC 5 cut(s) 151, 174, 729, 1107, 1326
CviAII CATG 8 cut(s) 20, 297, 319, 344, 626, 949, 1000, 1348
CviQI GTAC 5 cut(s) 151, 174, 729, 1107, 1326
DdeI CTNAG 3 cut(s) 413, 431, 665
DinI GGCGCC 1 cut(s) 30
DpnI GATC 7 cut(s) 110, 458, 615, 794, 906, 974, 1062
DpnII GATC 7 cut(s) 108, 456, 613, 792, 904, 972, 1060
Eam1104I CTCTTC 4 cut(s) 103, 250, 395, 468
EarI CTCTTC 4 cut(s) 103, 250, 395, 468
Eco130I CCWWGG 2 cut(s) 296, 925
Eco31I GGTCTC 1 cut(s) 427
Eco32I GATATC 1 cut(s) 1345
Eco47I GGWCC 2 cut(s) 293, 347
EcoRI GAATTC 1 cut(s) 1237
EcoRII CCWGG 1 cut(s) 538
EcoRV GATATC 1 cut(s) 1345
EcoT14I CCWWGG 2 cut(s) 296, 925
EgeI GGCGCC 1 cut(s) 30
EheI GGCGCC 1 cut(s) 30
ErhI CCWWGG 2 cut(s) 296, 925
FaeI CATG 8 cut(s) 23, 300, 322, 347, 629, 952, 1003, 1351
FalI AAGNNNNNCTT 2 cut(s) 247, 279
FaqI GGGAC 2 cut(s) 804, 1025
FatI CATG 8 cut(s) 19, 296, 318, 343, 625, 948, 999, 1347
FauI CCCGC 1 cut(s) 389
FauNDI CATATG 1 cut(s) 673
FbaI TGATCA 2 cut(s) 108, 904
FokI GGATG 3 cut(s) 569, 908, 1286
FspBI CTAG 3 cut(s) 167, 773, 1116
GlaI GCGC 3 cut(s) 30, 238, 635
GsaI CCCAGC 1 cut(s) 692
HaeII RGCGCY 1 cut(s) 32
HapII CCGG 4 cut(s) 26, 350, 809, 1139
HhaI GCGC 3 cut(s) 31, 239, 636
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 8 cut(s) 23, 300, 322, 347, 629, 952, 1003, 1351
Hin6I GCGC 3 cut(s) 29, 237, 634
HinP1I GCGC 3 cut(s) 29, 237, 634
HincII GTYRAC 1 cut(s) 1209
HindII GTYRAC 1 cut(s) 1209
HindIII AAGCTT 1 cut(s) 1189
HinfI GANTC 5 cut(s) 282, 609, 622, 1196, 1228
HpaII CCGG 4 cut(s) 26, 350, 809, 1139
HphI GGTGA 2 cut(s) 984, 1055
Hpy166II GTNNAC 3 cut(s) 731, 1209, 1333
Hpy188I TCNGA 4 cut(s) 339, 587, 602, 963
Hpy188III TCNNGA 7 cut(s) 286, 562, 647, 758, 863, 1130, 1139
Hpy8I GTNNAC 3 cut(s) 731, 1209, 1333
HpyAV CCTTC 6 cut(s) 83, 377, 447, 537, 1053, 1273
HpyCH4III ACNGT 2 cut(s) 765, 1330
HpyF10VI GCNNNNNNNGC 5 cut(s) 120, 234, 527, 950, 1293
HpyF3I CTNAG 3 cut(s) 413, 431, 665
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 8 cut(s) 23, 300, 322, 347, 629, 952, 1003, 1351
HspAI GCGC 3 cut(s) 29, 237, 634
KasI GGCGCC 1 cut(s) 28
Kpn2I TCCGGA 1 cut(s) 1138
KroI GCCGGC 1 cut(s) 25
KroNI GCCGGC 1 cut(s) 27
Ksp22I TGATCA 2 cut(s) 108, 904
Kzo9I GATC 7 cut(s) 108, 456, 613, 792, 904, 972, 1060
LguI GCTCTTC 1 cut(s) 250
LmnI GCTCC 2 cut(s) 600, 634
LweI GCATC 4 cut(s) 304, 383, 645, 954
MaeI CTAG 3 cut(s) 167, 773, 1116
MaeIII GTNAC 2 cut(s) 141, 619
MalI GATC 7 cut(s) 110, 458, 615, 794, 906, 974, 1062
MboI GATC 7 cut(s) 108, 456, 613, 792, 904, 972, 1060
MboII GAAGA 8 cut(s) 60, 90, 267, 320, 323, 412, 482, 485
MflI RGATCY 1 cut(s) 456
MhlI GDGCHC 1 cut(s) 262
Mly113I GGCGCC 1 cut(s) 29
MlyI GAGTC 3 cut(s) 276, 616, 1222
MmeI TCCRAC 1 cut(s) 511
MroI TCCGGA 1 cut(s) 1138
MroNI GCCGGC 1 cut(s) 25
MseI TTAA 6 cut(s) 11, 753, 1052, 1163, 1187, 1304
MslI CAYNNNNRTG 1 cut(s) 676
MspA1I CMGCKG 4 cut(s) 234, 692, 1076, 1299
MspI CCGG 4 cut(s) 26, 350, 809, 1139
MspR9I CCNGG 3 cut(s) 351, 540, 809
Mva1269I GAATGC 2 cut(s) 382, 498
MvaI CCWGG 1 cut(s) 540
MvnI CGCG 1 cut(s) 634
MwoI GCNNNNNNNGC 5 cut(s) 120, 234, 527, 950, 1293
NaeI GCCGGC 1 cut(s) 27
NarI GGCGCC 1 cut(s) 29
NciI CCSGG 2 cut(s) 351, 809
NcoI CCATGG 1 cut(s) 296
NdeI CATATG 1 cut(s) 673
NdeII GATC 7 cut(s) 108, 456, 613, 792, 904, 972, 1060
NgoMIV GCCGGC 1 cut(s) 25
NheI GCTAGC 1 cut(s) 772
NlaIII CATG 8 cut(s) 23, 300, 322, 347, 629, 952, 1003, 1351
NlaIV GGNNCC 2 cut(s) 30, 596
NmuCI GTSAC 2 cut(s) 141, 619
NspI RCATGY 1 cut(s) 23
NspV TTCGAA 1 cut(s) 1046
PciSI GCTCTTC 1 cut(s) 250
PctI GAATGC 2 cut(s) 382, 498
PdiI GCCGGC 1 cut(s) 27
PfeI GAWTC 2 cut(s) 609, 1196
PleI GAGTC 3 cut(s) 276, 616, 1222
PluTI GGCGCC 1 cut(s) 32
PpsI GAGTC 3 cut(s) 276, 616, 1222
Psp6I CCWGG 1 cut(s) 538
PspFI CCCAGC 1 cut(s) 688
PspGI CCWGG 1 cut(s) 538
PspN4I GGNNCC 2 cut(s) 30, 596
PspPI GGNCC 2 cut(s) 293, 347
PstI CTGCAG 2 cut(s) 390, 1295
PstNI CAGNNNCTG 2 cut(s) 695, 1299
PsuI RGATCY 1 cut(s) 456
PvuII CAGCTG 4 cut(s) 234, 692, 1076, 1299
RsaI GTAC 5 cut(s) 152, 175, 730, 1108, 1327
RsaNI GTAC 5 cut(s) 151, 174, 729, 1107, 1326
RseI CAYNNNNRTG 1 cut(s) 676
SapI GCTCTTC 1 cut(s) 250
SaqAI TTAA 6 cut(s) 11, 753, 1052, 1163, 1187, 1304
Sau3AI GATC 7 cut(s) 108, 456, 613, 792, 904, 972, 1060
Sau96I GGNCC 2 cut(s) 293, 347
ScaI AGTACT 2 cut(s) 1108, 1327
SchI GAGTC 3 cut(s) 276, 616, 1222
ScrFI CCNGG 3 cut(s) 351, 540, 809
SduI GDGCHC 1 cut(s) 262
SfaNI GCATC 4 cut(s) 304, 383, 645, 954
SfcI CTRYAG 2 cut(s) 386, 1291
SfoI GGCGCC 1 cut(s) 30
SfuI TTCGAA 1 cut(s) 1046
SinI GGWCC 2 cut(s) 293, 347
SmiMI CAYNNNNRTG 1 cut(s) 676
SmlI CTYRAG 4 cut(s) 118, 284, 861, 1009
SmoI CTYRAG 4 cut(s) 118, 284, 861, 1009
SsiI CCGC 3 cut(s) 396, 409, 632
SspDI GGCGCC 1 cut(s) 28
SspMI CTAG 3 cut(s) 167, 773, 1116
StyD4I CCNGG 3 cut(s) 349, 538, 807
StyI CCWWGG 2 cut(s) 296, 925
TaaI ACNGT 2 cut(s) 765, 1330
TaqI TCGA 6 cut(s) 612, 639, 713, 791, 1046, 1194
TatI WGTACW 3 cut(s) 728, 1106, 1325
TauI GCSGC 1 cut(s) 411
TfiI GAWTC 2 cut(s) 609, 1196
Tru1I TTAA 6 cut(s) 11, 753, 1052, 1163, 1187, 1304
Tru9I TTAA 6 cut(s) 11, 753, 1052, 1163, 1187, 1304
TscAI CASTG 2 cut(s) 247, 624
TseFI GTSAC 2 cut(s) 141, 619
Tsp45I GTSAC 2 cut(s) 141, 619
TspDTI ATGAA 4 cut(s) 570, 1016, 1137, 1230
TspGWI ACGGA 1 cut(s) 563
TspRI CASTG 2 cut(s) 247, 624
VpaK11BI GGWCC 2 cut(s) 293, 347
XapI RAATTY 4 cut(s) 13, 1048, 1144, 1237
XceI RCATGY 1 cut(s) 23
XcmI CCANNNNNNNNNTGG 1 cut(s) 247
XspI CTAG 3 cut(s) 167, 773, 1116
ZrmI AGTACT 2 cut(s) 1108, 1327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.