Rw2G045930
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
73102120 .. 73103446
1327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G045930.1

Sequence Viewer

Length: 1116 bp
ATGGGAAGAGCTCCTTGCTGTGACAAGAATGGACTCAAGAAAGGTCCATGGACTTCTGAAGAAGATGTTGTTCTCGTCAACTATATTCAGGAACATGGTCCAGGCAATTGGCGTAACCTCCCAAAGAACGCAGGACTCCAAAGATGTGGCAAGAGTTGCCGGCTTAGATGGACTAACTACCTGAGGCCTGATATAAAGAGAGGAAGATTTTCCTTCGAAGAAGAAGAGACTATAATCCAACTGCATAGCATCCTCGGCAACAAGTGGTCAGCTATTGCAGCACGCCTGCCAGGAAGAACTGACAACGAAATCAAGAACTACTGGAACACACACATCCGAAAAAGGCTTCTCCGAATGGGAATCGATCCAGTCACTCACGCTCCACGCCTCGATCTTCTTGACCTATCTTCCATCCTCGGTTCCTATGTCTCCAATATCAACCCAGCTGCAGCACTTCTCAACCTGTCAAACTTGTTAGGCACACAACAAGCCCTTAATGTCAATCCAGAACTGTTGCGGTTGGTAACCACTCTCTCGTCACTGAAACAAGGAAACCAGCAAATGTTTTCACAAAACCAAAACCAGGTTTGCAATATTTCCCAGGATTTACAAAACCAGTTGGTCCCATCGGTACAGTCCAATCCTCAGTTCCAAAATCTCTTCCAAGATGACTTTTCTCCAGACATGGCAAATCTAAAACAGCTCATGCAAATGATCAATACTGAAGGCAACTTACCCAACATGTCCAACTTCAGCAGCCCAGCCTCTTATTCCCAGGAAAATATAGTCCCTAATTCCAATTTCGGTCCCGAAACAGCTGTTTCCAATTTGCCAAGCTATGTACCTAGCAGTACTTCTAATTCTACTGTTCCTGAGTTGGCAGGAAATTCATTTTTCCAATTGCCTTTAAACAACAGCAATGTTAATCATGATTTCGGGTTTGATTCTGTTCTGTCTACGCCTCATTCGAGCCCGACTACCTTGAATTCTTCGGGCACATACAACAACATAAACAGCAGCAGTACAGAGGATGAGAGAGATCTGGAAAGCTATTGCAGCAACCTGTTGAAGTTTGAGATCCCGGACAGTACCTTGGATATCAATGATTACATGTAA

Protein Analysis

371

Amino Acids

41.42

Weight (kDa)

5.43

Isoelectric Point (pI)

52.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.5e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 2.5e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 111 2.7e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 114 4.4e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014777)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 956
AciI CCGC 1 cut(s) 517
AclWI GGATC 2 cut(s) 359, 1072
AcsI RAATTY 2 cut(s) 886, 985
AcuI CTGAAG 3 cut(s) 78, 736, 744
AfaI GTAC 5 cut(s) 633, 843, 853, 1024, 1090
AfiI CCNNNNNNNGG 1 cut(s) 583
AflIII ACRYGT 2 cut(s) 741, 1110
AgsI TTSAA 2 cut(s) 985, 1069
AjnI CCWGG 5 cut(s) 100, 289, 582, 600, 774
AjuI GAANNNNNNNTTGG 2 cut(s) 632, 664
AluBI AGCT 7 cut(s) 11, 272, 446, 703, 818, 837, 1050
AluI AGCT 7 cut(s) 11, 272, 446, 703, 818, 837, 1050
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 2 cut(s) 221, 433
AlwI GGATC 2 cut(s) 359, 1072
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 6 cut(s) 278, 446, 449, 756, 1017, 1056
ApoI RAATTY 2 cut(s) 886, 985
Asp700I GAANNNNTTC 1 cut(s) 208
AspS9I GGNCC 4 cut(s) 44, 98, 622, 806
AsuC2I CCSGG 1 cut(s) 1082
AsuII TTCGAA 1 cut(s) 216
AvaII GGWCC 4 cut(s) 44, 98, 622, 806
AxyI CCTNAGG 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 998
BanII GRGCYC 2 cut(s) 13, 974
BarI GAAGNNNNNNTAC 2 cut(s) 717, 749
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 6 cut(s) 290, 433, 461, 768, 1029, 1068
BccI CCATC 3 cut(s) 162, 419, 634
BciT130I CCWGG 5 cut(s) 102, 291, 584, 602, 776
BclI TGATCA 1 cut(s) 714
BcnI CCSGG 1 cut(s) 1082
BcoDI GTCTC 2 cut(s) 221, 433
BfaI CTAG 1 cut(s) 846
BfmI CTRYAG 1 cut(s) 447
BglII AGATCT 1 cut(s) 1039
BisI GCNGC 6 cut(s) 279, 447, 450, 757, 1018, 1057
BlsI GCNGC 6 cut(s) 280, 448, 451, 758, 1019, 1058
BmcAI AGTACT 1 cut(s) 853
Bme1390I CCNGG 6 cut(s) 102, 291, 584, 602, 776, 1082
Bme18I GGWCC 4 cut(s) 44, 98, 622, 806
BmgT120I GGNCC 4 cut(s) 44, 98, 622, 806
BmiI GGNNCC 3 cut(s) 421, 624, 808
BmrFI CCNGG 6 cut(s) 102, 291, 584, 602, 776, 1082
BmsI GCATC 1 cut(s) 258
BpmI CTGGAG 1 cut(s) 663
Bpu14I TTCGAA 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 20
BpuMI CCSGG 1 cut(s) 1082
Bsa29I ATCGAT 1 cut(s) 363
BsaJI CCNNGG 6 cut(s) 47, 253, 415, 600, 774, 1092
BsaXI ACNNNNNCTCC 2 cut(s) 364, 394
Bsc4I CCNNNNNNNGG 1 cut(s) 583
Bse118I RCCGGY 1 cut(s) 159
Bse1I ACTGG 3 cut(s) 326, 368, 616
Bse21I CCTNAGG 1 cut(s) 182
Bse3DI GCAATG 1 cut(s) 925
BseBI CCWGG 5 cut(s) 102, 291, 584, 602, 776
BseCI ATCGAT 1 cut(s) 363
BseDI CCNNGG 6 cut(s) 47, 253, 415, 600, 774, 1092
BseGI GGATG 4 cut(s) 249, 333, 411, 1036
BseLI CCNNNNNNNGG 1 cut(s) 583
BseMI GCAATG 1 cut(s) 925
BseMII CTCAG 3 cut(s) 173, 659, 864
BseNI ACTGG 3 cut(s) 326, 368, 616
BseSI GKGCMC 1 cut(s) 998
BseXI GCAGC 6 cut(s) 290, 433, 461, 768, 1029, 1068
BseYI CCCAGC 2 cut(s) 442, 760
BshFI GGCC 1 cut(s) 187
BshVI ATCGAT 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 13
BsiSI CCGG 2 cut(s) 160, 1082
BslFI GGGAC 3 cut(s) 608, 773, 792
BslI CCNNNNNNNGG 1 cut(s) 583
BsmAI GTCTC 2 cut(s) 221, 433
BsmFI GGGAC 3 cut(s) 608, 773, 792
BsnI GGCC 1 cut(s) 187
Bsp119I TTCGAA 1 cut(s) 216
Bsp1286I GDGCHC 3 cut(s) 13, 974, 998
Bsp143I GATC 5 cut(s) 364, 391, 714, 1039, 1077
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 1 cut(s) 517
BspANI GGCC 1 cut(s) 187
BspCNI CTCAG 3 cut(s) 174, 658, 865
BspDI ATCGAT 1 cut(s) 363
BspHI TCATGA 1 cut(s) 928
BspLI GGNNCC 3 cut(s) 421, 624, 808
BspMAI CTGCAG 1 cut(s) 451
BspPI GGATC 2 cut(s) 359, 1072
BspT104I TTCGAA 1 cut(s) 216
BsrDI GCAATG 1 cut(s) 925
BsrFI RCCGGY 1 cut(s) 159
BsrI ACTGG 3 cut(s) 326, 368, 616
BssAI RCCGGY 1 cut(s) 159
BssECI CCNNGG 6 cut(s) 47, 253, 415, 600, 774, 1092
BssMI GATC 5 cut(s) 364, 391, 714, 1039, 1077
BssT1I CCWWGG 2 cut(s) 47, 1092
Bst2UI CCWGG 5 cut(s) 102, 291, 584, 602, 776
Bst4CI ACNGT 4 cut(s) 513, 636, 868, 1088
Bst6I CTCTTC 2 cut(s) 219, 665
BstAPI GCANNNNNTGC 1 cut(s) 156
BstBI TTCGAA 1 cut(s) 216
BstC8I GCNNGC 3 cut(s) 161, 283, 287
BstDEI CTNAG 4 cut(s) 164, 182, 645, 873
BstDSI CCRYGG 1 cut(s) 47
BstEII GGTNACC 1 cut(s) 523
BstF5I GGATG 4 cut(s) 249, 333, 411, 1036
BstKTI GATC 5 cut(s) 367, 394, 717, 1042, 1080
BstMAI GTCTC 2 cut(s) 221, 433
BstMBI GATC 5 cut(s) 364, 391, 714, 1039, 1077
BstMWI GCNNNNNNNGC 4 cut(s) 156, 255, 278, 1056
BstNI CCWGG 5 cut(s) 102, 291, 584, 602, 776
BstNSI RCATGY 2 cut(s) 745, 1114
BstPI GGTNACC 1 cut(s) 523
BstSCI CCNGG 6 cut(s) 100, 289, 582, 600, 774, 1080
BstSFI CTRYAG 1 cut(s) 447
BstSLI GKGCMC 1 cut(s) 998
BstV1I GCAGC 6 cut(s) 290, 433, 461, 768, 1029, 1068
BstX2I RGATCY 2 cut(s) 1039, 1077
BstXI CCANNNNNNTGG 2 cut(s) 108, 146
BstYI RGATCY 2 cut(s) 1039, 1077
Bsu15I ATCGAT 1 cut(s) 363
Bsu36I CCTNAGG 1 cut(s) 182
BsuRI GGCC 1 cut(s) 187
BsuTUI ATCGAT 1 cut(s) 363
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 4 cut(s) 249, 333, 411, 1036
BtsIMutI CAGTG 1 cut(s) 539
Cac8I GCNNGC 3 cut(s) 161, 283, 287
CciI TCATGA 1 cut(s) 928
Cfr10I RCCGGY 1 cut(s) 159
Cfr13I GGNCC 4 cut(s) 44, 98, 622, 806
ClaI ATCGAT 1 cut(s) 363
CsiI ACCWGGT 1 cut(s) 582
Csp6I GTAC 5 cut(s) 632, 842, 852, 1023, 1089
CviAII CATG 7 cut(s) 48, 95, 685, 706, 742, 929, 1111
CviQI GTAC 5 cut(s) 632, 842, 852, 1023, 1089
DdeI CTNAG 4 cut(s) 164, 182, 645, 873
DpnI GATC 5 cut(s) 366, 393, 716, 1041, 1079
DpnII GATC 5 cut(s) 364, 391, 714, 1039, 1077
DraI TTTAAA 1 cut(s) 909
Eam1104I CTCTTC 2 cut(s) 219, 665
EarI CTCTTC 2 cut(s) 219, 665
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 2 cut(s) 47, 1092
Eco147I AGGCCT 1 cut(s) 187
Eco24I GRGCYC 2 cut(s) 13, 974
Eco32I GATATC 1 cut(s) 1099
Eco47I GGWCC 4 cut(s) 44, 98, 622, 806
Eco53kI GAGCTC 1 cut(s) 11
Eco57I CTGAAG 3 cut(s) 78, 736, 744
Eco81I CCTNAGG 1 cut(s) 182
Eco91I GGTNACC 1 cut(s) 523
EcoICRI GAGCTC 1 cut(s) 11
EcoO65I GGTNACC 1 cut(s) 523
EcoRI GAATTC 1 cut(s) 985
EcoRII CCWGG 5 cut(s) 100, 289, 582, 600, 774
EcoRV GATATC 1 cut(s) 1099
EcoT14I CCWWGG 2 cut(s) 47, 1092
EcoT38I GRGCYC 2 cut(s) 13, 974
ErhI CCWWGG 2 cut(s) 47, 1092
FaeI CATG 7 cut(s) 51, 98, 688, 709, 745, 932, 1114
FalI AAGNNNNNCTT 1 cut(s) 30
FaqI GGGAC 3 cut(s) 608, 773, 792
FatI CATG 7 cut(s) 47, 94, 684, 705, 741, 928, 1110
FbaI TGATCA 1 cut(s) 714
FblI GTMKAC 1 cut(s) 956
Fnu4HI GCNGC 6 cut(s) 279, 447, 450, 757, 1018, 1057
FokI GGATG 4 cut(s) 236, 320, 398, 1043
FriOI GRGCYC 2 cut(s) 13, 974
Fsp4HI GCNGC 6 cut(s) 279, 447, 450, 757, 1018, 1057
FspBI CTAG 1 cut(s) 846
GluI GCNGC 6 cut(s) 279, 447, 450, 757, 1018, 1057
GsaI CCCAGC 2 cut(s) 446, 764
GsuI CTGGAG 1 cut(s) 663
HaeIII GGCC 1 cut(s) 187
HapII CCGG 2 cut(s) 160, 1082
Hin1II CATG 7 cut(s) 51, 98, 688, 709, 745, 932, 1114
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HinfI GANTC 4 cut(s) 33, 135, 360, 944
HpaII CCGG 2 cut(s) 160, 1082
Hpy166II GTNNAC 2 cut(s) 79, 957
Hpy188I TCNGA 3 cut(s) 58, 338, 353
Hpy8I GTNNAC 2 cut(s) 79, 957
HpyAV CCTTC 2 cut(s) 223, 719
HpyCH4III ACNGT 4 cut(s) 513, 636, 868, 1088
HpyCH4V TGCA 6 cut(s) 244, 278, 449, 591, 709, 1056
HpyF10VI GCNNNNNNNGC 4 cut(s) 156, 255, 278, 1056
HpyF3I CTNAG 4 cut(s) 164, 182, 645, 873
Hsp92II CATG 7 cut(s) 51, 98, 688, 709, 745, 932, 1114
KroI GCCGGC 1 cut(s) 159
KroNI GCCGGC 1 cut(s) 161
Ksp22I TGATCA 1 cut(s) 714
Kzo9I GATC 5 cut(s) 364, 391, 714, 1039, 1077
LmnI GCTCC 2 cut(s) 16, 385
Lsp1109I GCAGC 6 cut(s) 290, 433, 461, 768, 1029, 1068
LweI GCATC 1 cut(s) 258
MabI ACCWGGT 1 cut(s) 582
MaeI CTAG 1 cut(s) 846
MaeIII GTNAC 5 cut(s) 20, 113, 370, 523, 537
MalI GATC 5 cut(s) 366, 393, 716, 1041, 1079
MboI GATC 5 cut(s) 364, 391, 714, 1039, 1077
MfeI CAATTG 2 cut(s) 106, 899
MflI RGATCY 2 cut(s) 1039, 1077
MhlI GDGCHC 3 cut(s) 13, 974, 998
MluCI AATT 8 cut(s) 106, 793, 799, 826, 859, 886, 899, 985
MlyI GAGTC 2 cut(s) 27, 129
MmeI TCCRAC 2 cut(s) 262, 771
MroNI GCCGGC 1 cut(s) 159
MroXI GAANNNNTTC 1 cut(s) 208
MseI TTAA 3 cut(s) 495, 908, 924
MslI CAYNNNNRTG 1 cut(s) 710
MspA1I CMGCKG 2 cut(s) 446, 818
MspI CCGG 2 cut(s) 160, 1082
MspR9I CCNGG 6 cut(s) 102, 291, 584, 602, 776, 1082
MunI CAATTG 2 cut(s) 106, 899
MvaI CCWGG 5 cut(s) 102, 291, 584, 602, 776
MwoI GCNNNNNNNGC 4 cut(s) 156, 255, 278, 1056
NaeI GCCGGC 1 cut(s) 161
NciI CCSGG 1 cut(s) 1082
NcoI CCATGG 1 cut(s) 47
NdeII GATC 5 cut(s) 364, 391, 714, 1039, 1077
NgoMIV GCCGGC 1 cut(s) 159
NlaIII CATG 7 cut(s) 51, 98, 688, 709, 745, 932, 1114
NlaIV GGNNCC 3 cut(s) 421, 624, 808
NmeAIII GCCGAG 1 cut(s) 234
NmuCI GTSAC 3 cut(s) 20, 370, 537
NspI RCATGY 2 cut(s) 745, 1114
NspV TTCGAA 1 cut(s) 216
PagI TCATGA 1 cut(s) 928
PceI AGGCCT 1 cut(s) 187
PciI ACATGT 2 cut(s) 741, 1110
PcsI WCGNNNNNNNCGW 1 cut(s) 965
PdiI GCCGGC 1 cut(s) 161
PdmI GAANNNNTTC 1 cut(s) 208
PfeI GAWTC 2 cut(s) 360, 944
PfoI TCCNGGA 1 cut(s) 1080
PkrI GCNGC 6 cut(s) 280, 448, 451, 758, 1019, 1058
PleI GAGTC 2 cut(s) 27, 129
PpsI GAGTC 2 cut(s) 27, 129
PscI ACATGT 2 cut(s) 741, 1110
Psp124BI GAGCTC 1 cut(s) 13
Psp6I CCWGG 5 cut(s) 100, 289, 582, 600, 774
PspEI GGTNACC 1 cut(s) 523
PspFI CCCAGC 2 cut(s) 442, 760
PspGI CCWGG 5 cut(s) 100, 289, 582, 600, 774
PspN4I GGNNCC 3 cut(s) 421, 624, 808
PspPI GGNCC 4 cut(s) 44, 98, 622, 806
PstI CTGCAG 1 cut(s) 451
PsuI RGATCY 2 cut(s) 1039, 1077
PvuII CAGCTG 2 cut(s) 446, 818
RsaI GTAC 5 cut(s) 633, 843, 853, 1024, 1090
RsaNI GTAC 5 cut(s) 632, 842, 852, 1023, 1089
RseI CAYNNNNRTG 1 cut(s) 710
SacI GAGCTC 1 cut(s) 13
SaqAI TTAA 3 cut(s) 495, 908, 924
SatI GCNGC 6 cut(s) 279, 447, 450, 757, 1018, 1057
Sau3AI GATC 5 cut(s) 364, 391, 714, 1039, 1077
Sau96I GGNCC 4 cut(s) 44, 98, 622, 806
ScaI AGTACT 1 cut(s) 853
SchI GAGTC 2 cut(s) 27, 129
ScrFI CCNGG 6 cut(s) 102, 291, 584, 602, 776, 1082
SduI GDGCHC 3 cut(s) 13, 974, 998
SexAI ACCWGGT 1 cut(s) 582
SfaNI GCATC 1 cut(s) 258
SfcI CTRYAG 1 cut(s) 447
SfuI TTCGAA 1 cut(s) 216
SinI GGWCC 4 cut(s) 44, 98, 622, 806
SmiMI CAYNNNNRTG 1 cut(s) 710
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
Sse9I AATT 8 cut(s) 106, 793, 799, 826, 859, 886, 899, 985
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 1 cut(s) 517
SspI AATATT 1 cut(s) 595
SspMI CTAG 1 cut(s) 846
SstI GAGCTC 1 cut(s) 13
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 6 cut(s) 100, 289, 582, 600, 774, 1080
StyI CCWWGG 2 cut(s) 47, 1092
TaaI ACNGT 4 cut(s) 513, 636, 868, 1088
TaqI TCGA 4 cut(s) 216, 363, 390, 968
TaqII GACCGA 1 cut(s) 794
TasI AATT 8 cut(s) 106, 793, 799, 826, 859, 886, 899, 985
TatI WGTACW 2 cut(s) 851, 1022
TfiI GAWTC 2 cut(s) 360, 944
Tru1I TTAA 3 cut(s) 495, 908, 924
Tru9I TTAA 3 cut(s) 495, 908, 924
TscAI CASTG 1 cut(s) 546
TseFI GTSAC 3 cut(s) 20, 370, 537
TseI GCWGC 6 cut(s) 278, 446, 449, 756, 1017, 1056
Tsp45I GTSAC 3 cut(s) 20, 370, 537
TspDTI ATGAA 1 cut(s) 879
TspRI CASTG 1 cut(s) 546
VpaK11BI GGWCC 4 cut(s) 44, 98, 622, 806
XapI RAATTY 2 cut(s) 886, 985
XceI RCATGY 2 cut(s) 745, 1114
XmiI GTMKAC 1 cut(s) 956
XmnI GAANNNNTTC 1 cut(s) 208
XspI CTAG 1 cut(s) 846
ZrmI AGTACT 1 cut(s) 853
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.