Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0014777

Physical Location & Seq

Genomic Coordinates Forward (+)

6200835 .. 6202212

Gene Structure 1378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g08350.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGGAAGAGCTCCTTGCTGTGATAAAAATGGACTCAAGAAAGGTCCATGGACAACTGAAGAAGATGCCCTGCTAGTGAATTATATTCAGAAGCATGGCCCTGGAAATTGGAGAAACCTTCCAAAGAATGCAGCTATTGCTGCTCGCTTGCCAGGAAGGACAGACAACGAAATAAAAAACTACTGGAACACGCACATCCGAAAAAGGCTCCTTCGAATGGGAATTGATCCCGTGACTCATGCTCCACGCATCGATCTTCTTGATCTGTCCTCAATTCTCAGCTCATATGTGTGCAACAACCCAGCTGCTGCACTACTCAATTTGTCAAACTTGTTGAATAGTACCCAGCAGCAACAACCACTTGTTAATCCAGAAATGTTAAGGCTAGCAACAAGTCTGTTATCAATCAAACAAGAAAACCCGGAAATGTGTTCCCAAAATTATAATCTCAATCAAAACCAGGTTTCCAATTCTCAGGAACAAAATAATCAAGTTCTCCCACCTTTACAATGCAATGATCAGTTTCAAAATCTTATCCAAGGGGGAGACTTTTCTGCTGACATGGCAAAACATCTGATGCAACAGATCAATGTGAAAGGTTACTCACCAAACATGACCAACTTGAGCTGCCCCCTTTCCCAAGAAAACATAGTCCCTCCGAATTTGAGTGCCGATCATCATCAAACAGCTGTCTCCCAACCAAACTATGTGCCTTGCAGTACTACTTCTGGTAACCCTAGTCCTGATTATCCGGAAAATTCATATTTCCAATCTTTTAACTACAACAAGAACCACGATTTCAGCTTCGATTCAGTTATGTCAACGCCTTATTCAAGCCCGACTCCTTTGAATTCATCAGGTACATACATAAACAGCAGCATAGAGGATGAGAAGGAAAGCTATTGCAGCAGTTGGTTAAAGTTTGAAATCCCAGAGGGTACTTTGGACATCAGTGATATCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009825 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016049 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0040007 GO:0042221 GO:0042335 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080091 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

322

Amino Acids

35.88

Weight (kDa)

5.35

Isoelectric Point (pI)

46.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014777)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g44400 FvH4_6g44400
malus_domestica	MD09G1097700.v1.1 MD17G1086000.v1.1
prunus_persica	Prupe.3G228500_v2.0.a1
pyrus_communis	pycom09g02180 pycom17g08350
rosa_chinensis	RchiOBHm_Chr2g0161391
rosa_multiflora	Rmu_sc0004030.1_g000007 Rmu_sc0010382.1_g000002
rosa_roxburghii	Rroxscaffold_2G00088880
rosa_rugosa	Rorug02G0488700
rosa_samantha	Rh2AG555100 Rh2BG568400 Rh2CG539000 Rh2DG578000
rosa_wichuraiana	Rw2G045930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	444
AccIII	TCCGGA	1 cut(s)	751
AclWI	GGATC	1 cut(s)	221
AcsI	RAATTY	3 cut(s)	661, 757, 850
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	4 cut(s)	343, 721, 862, 940
AfiI	CCNNNNNNNGG	1 cut(s)	217
AgsI	TTSAA	5 cut(s)	337, 527, 834, 850, 926
AjnI	CCWGG	3 cut(s)	100, 151, 459
AluBI	AGCT	8 cut(s)	11, 134, 282, 305, 627, 689, 804, 900
AluI	AGCT	8 cut(s)	11, 134, 282, 305, 627, 689, 804, 900
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	2 cut(s)	540, 697
AlwI	GGATC	1 cut(s)	221
AlwNI	CAGNNNCTG	1 cut(s)	308
Aor13HI	TCCGGA	1 cut(s)	751
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	8 cut(s)	131, 140, 305, 308, 349, 627, 876, 906
ApoI	RAATTY	3 cut(s)	661, 757, 850
AspS9I	GGNCC	2 cut(s)	44, 98
AsuC2I	CCSGG	1 cut(s)	422
AsuHPI	GGTGA	1 cut(s)	597
AsuII	TTCGAA	1 cut(s)	214
AsuNHI	GCTAGC	1 cut(s)	385
AvaII	GGWCC	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	8 cut(s)	127, 143, 292, 295, 361, 614, 888, 918
BciT130I	CCWGG	3 cut(s)	102, 153, 461
BclI	TGATCA	1 cut(s)	517
BcnI	CCSGG	1 cut(s)	422
BcoDI	GTCTC	2 cut(s)	540, 697
BfaI	CTAG	3 cut(s)	74, 386, 738
BisI	GCNGC	8 cut(s)	132, 141, 306, 309, 350, 628, 877, 907
BlsI	GCNGC	8 cut(s)	133, 142, 307, 310, 351, 629, 878, 908
BmcAI	AGTACT	1 cut(s)	721
Bme1390I	CCNGG	4 cut(s)	102, 153, 422, 461
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	2 cut(s)	44, 98
BmiI	GGNNCC	1 cut(s)	209
BmrFI	CCNGG	4 cut(s)	102, 153, 422, 461
BmsI	GCATC	3 cut(s)	55, 258, 567
BmtI	GCTAGC	1 cut(s)	389
Bpu14I	TTCGAA	1 cut(s)	214
BpuEI	CTTGAG	2 cut(s)	20, 643
BpuMI	CCSGG	1 cut(s)	422
Bsa29I	ATCGAT	1 cut(s)	252
BsaBI	GATNNNNATC	1 cut(s)	678
BsaJI	CCNNGG	3 cut(s)	47, 100, 538
BsaWI	WCCGGW	1 cut(s)	751
BsaXI	ACNNNNNCTCC	2 cut(s)	226, 256
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse1I	ACTGG	1 cut(s)	188
Bse3DI	GCAATG	1 cut(s)	520
Bse8I	GATNNNNATC	1 cut(s)	678
BseAI	TCCGGA	1 cut(s)	751
BseBI	CCWGG	3 cut(s)	102, 153, 461
BseCI	ATCGAT	1 cut(s)	252
BseDI	CCNNGG	3 cut(s)	47, 100, 538
BseGI	GGATG	2 cut(s)	195, 892
BseJI	GATNNNNATC	1 cut(s)	678
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMI	GCAATG	1 cut(s)	520
BseMII	CTCAG	2 cut(s)	292, 488
BseNI	ACTGG	1 cut(s)	188
BseXI	GCAGC	8 cut(s)	127, 143, 292, 295, 361, 614, 888, 918
BseYI	CCCAGC	2 cut(s)	301, 345
BsgI	GTGCAG	1 cut(s)	294
BshFI	GGCC	1 cut(s)	99
BshVI	ATCGAT	1 cut(s)	252
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	2 cut(s)	422, 752
BslFI	GGGAC	1 cut(s)	638
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmAI	GTCTC	2 cut(s)	540, 697
BsmFI	GGGAC	1 cut(s)	638
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	1 cut(s)	99
Bsp119I	TTCGAA	1 cut(s)	214
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp13I	TCCGGA	1 cut(s)	751
Bsp143I	GATC	6 cut(s)	226, 253, 262, 517, 585, 673
Bsp19I	CCATGG	1 cut(s)	47
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	2 cut(s)	291, 487
BspDI	ATCGAT	1 cut(s)	252
BspEI	TCCGGA	1 cut(s)	751
BspLI	GGNNCC	1 cut(s)	209
BspOI	GCTAGC	1 cut(s)	389
BspPI	GGATC	1 cut(s)	221
BspT104I	TTCGAA	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	520
BsrI	ACTGG	1 cut(s)	188
BssECI	CCNNGG	3 cut(s)	47, 100, 538
BssMI	GATC	6 cut(s)	226, 253, 262, 517, 585, 673
BssT1I	CCWWGG	2 cut(s)	47, 538
Bst2UI	CCWGG	3 cut(s)	102, 153, 461
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstBI	TTCGAA	1 cut(s)	214
BstC8I	GCNNGC	3 cut(s)	145, 149, 387
BstDEI	CTNAG	2 cut(s)	278, 474
BstDSI	CCRYGG	1 cut(s)	47
BstEII	GGTNACC	1 cut(s)	731
BstF5I	GGATG	2 cut(s)	195, 892
BstKTI	GATC	6 cut(s)	229, 256, 265, 520, 588, 676
BstMAI	GTCTC	2 cut(s)	540, 697
BstMBI	GATC	6 cut(s)	226, 253, 262, 517, 585, 673
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 140, 563, 906
BstNI	CCWGG	3 cut(s)	102, 153, 461
BstPI	GGTNACC	1 cut(s)	731
BstSCI	CCNGG	4 cut(s)	100, 151, 420, 459
BstV1I	GCAGC	8 cut(s)	127, 143, 292, 295, 361, 614, 888, 918
Bsu15I	ATCGAT	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	99
BsuTUI	ATCGAT	1 cut(s)	252
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	195, 892
BtsIMutI	CAGTG	1 cut(s)	958
Cac8I	GCNNGC	3 cut(s)	145, 149, 387
CaiI	CAGNNNCTG	1 cut(s)	308
Cfr13I	GGNCC	2 cut(s)	44, 98
ClaI	ATCGAT	1 cut(s)	252
CsiI	ACCWGGT	1 cut(s)	459
Csp6I	GTAC	4 cut(s)	342, 720, 861, 939
CviAII	CATG	5 cut(s)	48, 95, 239, 562, 613
CviQI	GTAC	4 cut(s)	342, 720, 861, 939
DdeI	CTNAG	2 cut(s)	278, 474
DpnI	GATC	6 cut(s)	228, 255, 264, 519, 587, 675
DpnII	GATC	6 cut(s)	226, 253, 262, 517, 585, 673
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	2 cut(s)	47, 538
Eco24I	GRGCYC	1 cut(s)	13
Eco32I	GATATC	1 cut(s)	958
Eco47I	GGWCC	1 cut(s)	44
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	78
Eco91I	GGTNACC	1 cut(s)	731
EcoICRI	GAGCTC	1 cut(s)	11
EcoO65I	GGTNACC	1 cut(s)	731
EcoRI	GAATTC	1 cut(s)	850
EcoRII	CCWGG	3 cut(s)	100, 151, 459
EcoRV	GATATC	1 cut(s)	958
EcoT14I	CCWWGG	2 cut(s)	47, 538
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	2 cut(s)	47, 538
FaeI	CATG	5 cut(s)	51, 98, 242, 565, 616
FalI	AAGNNNNNCTT	1 cut(s)	30
FaqI	GGGAC	1 cut(s)	638
FatI	CATG	5 cut(s)	47, 94, 238, 561, 612
FauNDI	CATATG	1 cut(s)	286
FbaI	TGATCA	1 cut(s)	517
Fnu4HI	GCNGC	8 cut(s)	132, 141, 306, 309, 350, 628, 877, 907
FokI	GGATG	2 cut(s)	182, 899
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	8 cut(s)	132, 141, 306, 309, 350, 628, 877, 907
FspBI	CTAG	3 cut(s)	74, 386, 738
GluI	GCNGC	8 cut(s)	132, 141, 306, 309, 350, 628, 877, 907
GsaI	CCCAGC	2 cut(s)	305, 349
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	2 cut(s)	422, 752
Hin1II	CATG	5 cut(s)	51, 98, 242, 565, 616
HincII	GTYRAC	1 cut(s)	822
HindII	GTYRAC	1 cut(s)	822
HinfI	GANTC	4 cut(s)	33, 235, 809, 841
HpaII	CCGG	2 cut(s)	422, 752
HphI	GGTGA	1 cut(s)	597
Hpy166II	GTNNAC	1 cut(s)	822
Hpy188I	TCNGA	4 cut(s)	90, 200, 576, 660
Hpy188III	TCNNGA	6 cut(s)	37, 260, 371, 476, 743, 752
Hpy8I	GTNNAC	1 cut(s)	822
HpyAV	CCTTC	4 cut(s)	128, 150, 221, 886
HpyCH4V	TGCA	7 cut(s)	131, 294, 311, 513, 580, 717, 906
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 140, 563, 906
HpyF3I	CTNAG	2 cut(s)	278, 474
Hsp92II	CATG	5 cut(s)	51, 98, 242, 565, 616
Kpn2I	TCCGGA	1 cut(s)	751
Ksp22I	TGATCA	1 cut(s)	517
Kzo9I	GATC	6 cut(s)	226, 253, 262, 517, 585, 673
LmnI	GCTCC	3 cut(s)	16, 213, 247
Lsp1109I	GCAGC	8 cut(s)	127, 143, 292, 295, 361, 614, 888, 918
LweI	GCATC	3 cut(s)	55, 258, 567
MabI	ACCWGGT	1 cut(s)	459
MaeI	CTAG	3 cut(s)	74, 386, 738
MaeIII	GTNAC	3 cut(s)	232, 599, 731
MalI	GATC	6 cut(s)	228, 255, 264, 519, 587, 675
MboI	GATC	6 cut(s)	226, 253, 262, 517, 585, 673
MboII	GAAGA	4 cut(s)	18, 71, 74, 248
MhlI	GDGCHC	1 cut(s)	13
MlyI	GAGTC	3 cut(s)	27, 229, 835
MnlI	CCTC	4 cut(s)	280, 666, 877, 928
MroI	TCCGGA	1 cut(s)	751
MseI	TTAA	4 cut(s)	366, 380, 777, 917
MslI	CAYNNNNRTG	1 cut(s)	289
MspA1I	CMGCKG	2 cut(s)	305, 689
MspI	CCGG	2 cut(s)	422, 752
MspR9I	CCNGG	4 cut(s)	102, 153, 422, 461
Mva1269I	GAATGC	1 cut(s)	133
MvaI	CCWGG	3 cut(s)	102, 153, 461
MwoI	GCNNNNNNNGC	4 cut(s)	137, 140, 563, 906
NciI	CCSGG	1 cut(s)	422
NcoI	CCATGG	1 cut(s)	47
NdeI	CATATG	1 cut(s)	286
NdeII	GATC	6 cut(s)	226, 253, 262, 517, 585, 673
NheI	GCTAGC	1 cut(s)	385
NlaIII	CATG	5 cut(s)	51, 98, 242, 565, 616
NlaIV	GGNNCC	1 cut(s)	209
NmuCI	GTSAC	1 cut(s)	232
NspV	TTCGAA	1 cut(s)	214
PctI	GAATGC	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	809
PkrI	GCNGC	8 cut(s)	133, 142, 307, 310, 351, 629, 878, 908
PleI	GAGTC	3 cut(s)	27, 229, 835
PpsI	GAGTC	3 cut(s)	27, 229, 835
PsiI	TTATAA	1 cut(s)	444
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	3 cut(s)	100, 151, 459
PspEI	GGTNACC	1 cut(s)	731
PspFI	CCCAGC	2 cut(s)	301, 345
PspGI	CCWGG	3 cut(s)	100, 151, 459
PspN4I	GGNNCC	1 cut(s)	209
PspPI	GGNCC	2 cut(s)	44, 98
PstNI	CAGNNNCTG	1 cut(s)	308
PvuII	CAGCTG	2 cut(s)	305, 689
RsaI	GTAC	4 cut(s)	343, 721, 862, 940
RsaNI	GTAC	4 cut(s)	342, 720, 861, 939
RseI	CAYNNNNRTG	1 cut(s)	289
SacI	GAGCTC	1 cut(s)	13
SaqAI	TTAA	4 cut(s)	366, 380, 777, 917
SatI	GCNGC	8 cut(s)	132, 141, 306, 309, 350, 628, 877, 907
Sau3AI	GATC	6 cut(s)	226, 253, 262, 517, 585, 673
Sau96I	GGNCC	2 cut(s)	44, 98
ScaI	AGTACT	1 cut(s)	721
SchI	GAGTC	3 cut(s)	27, 229, 835
ScrFI	CCNGG	4 cut(s)	102, 153, 422, 461
SduI	GDGCHC	1 cut(s)	13
SexAI	ACCWGGT	1 cut(s)	459
SfaNI	GCATC	3 cut(s)	55, 258, 567
SfuI	TTCGAA	1 cut(s)	214
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	289
SmlI	CTYRAG	2 cut(s)	35, 622
SmoI	CTYRAG	2 cut(s)	35, 622
SspMI	CTAG	3 cut(s)	74, 386, 738
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	4 cut(s)	100, 151, 420, 459
StyI	CCWWGG	2 cut(s)	47, 538
TaqI	TCGA	3 cut(s)	214, 252, 807
TatI	WGTACW	1 cut(s)	719
TfiI	GAWTC	1 cut(s)	809
Tru1I	TTAA	4 cut(s)	366, 380, 777, 917
Tru9I	TTAA	4 cut(s)	366, 380, 777, 917
TscAI	CASTG	1 cut(s)	958
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	8 cut(s)	131, 140, 305, 308, 349, 627, 876, 906
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	2 cut(s)	750, 843
TspRI	CASTG	1 cut(s)	958
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	3 cut(s)	661, 757, 850
XspI	CTAG	3 cut(s)	74, 386, 738
ZrmI	AGTACT	1 cut(s)	721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.