Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0014777

Physical Location & Seq

Genomic Coordinates Forward (+)

10765633 .. 10767031

Gene Structure 1399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00088880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGGAAGAGCTCCTTGCTGTGACAAGAATGGACTCAAGAAAGGTCCATGGACTTCTGAAGAAGATGTTATTCTCGTCAACTATATTCAGGAACATGGTCCAGGCAATTGGCGTAACCTCCCAAAGAACGCAGCTATTGCAGCTCGCCTGCCAGGAAGAACTGACAACGAAATCAAGAACTACTGGAACACACACATCCGAAAAAGGCTTCTCCGAATGGGAATCGATCCAGTCACTCACTCTCCACGCCTCGATCTTCTTGACCTATCATCCATCCTCGGTTCCTATGTCTCCAATATCAACCCAGCTGCAGCACTTCTCAACTTGTCAAACTTGTTAGGCACACAACAAGCCCTTAATGTCAATCCAGAACTGTTGCGGTTGGTAACCACTCTCTCGTCACTGAAACAAGGAAACCCGCAAATGTTTTCACAAAACCAAAACCAGGTTTGCAATATTTCCCAGGATTTACAAAACCAGTTGGTCCCATCGTTACAGTCCAATCCTCAGTTCCAAAATCTCTTCCAAGATGACTTTTCTCCAGACATGGCAAACCTAAAACAGCTCATGCAAATGATCAATACAGAAGGCAACTTACCCAACATGTCCAACTTCAGCAGCCCAGCTTCTTATTCCCAGGAAAATATAGTCCCTAATTCCAATTTCGGTCCCGAAATAGCTGTTTCCAATTTGCCAAGCTATGTACCTAGCAGTACTTCTAATCCTACTGTTCCTGAGTTGGCAGGAAATTCATTTTTCCAATTGCCTTTAAACAACAGCAATGTTAATCATGATTTCGGGTTTGATTCTGTTCTGTCGACGCCTCATTCGAGCCCGACTACCTTGAATTCTTCGGGCACATACAACAACATAAACAGCAGCAGCACAGAGGATGAGAGAGATCTGGAAAGCTATTGCAGCAACCTGTTGAAGTTTGAGATCCCGGACAGTACCTTGGATATCAATGATTACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009825 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016049 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0040007 GO:0042221 GO:0042335 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080091 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

325

Amino Acids

35.95

Weight (kDa)

4.83

Isoelectric Point (pI)

52.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 65	1.6e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 68	3.9e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014777)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g44400 FvH4_6g44400
malus_domestica	MD09G1097700.v1.1 MD17G1086000.v1.1
prunus_persica	Prupe.3G228500_v2.0.a1
pyrus_communis	pycom09g02180 pycom17g08350
rosa_chinensis	RchiOBHm_Chr2g0161391
rosa_multiflora	Rmu_sc0004030.1_g000007 Rmu_sc0010382.1_g000002
rosa_roxburghii	Rroxscaffold_2G00088880
rosa_rugosa	Rorug02G0488700
rosa_samantha	Rh2AG555100 Rh2BG568400 Rh2CG539000 Rh2DG578000
rosa_wichuraiana	Rw2G045930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	818
AciI	CCGC	2 cut(s)	379, 419
AclWI	GGATC	2 cut(s)	221, 934
AcsI	RAATTY	2 cut(s)	748, 847
AcuI	CTGAAG	2 cut(s)	78, 598
AcyI	GRCGYC	1 cut(s)	821
AfaI	GTAC	3 cut(s)	705, 715, 952
AfiI	CCNNNNNNNGG	1 cut(s)	445
AflIII	ACRYGT	2 cut(s)	603, 972
AgsI	TTSAA	2 cut(s)	847, 931
AjnI	CCWGG	5 cut(s)	100, 151, 444, 462, 636
AjuI	GAANNNNNNNTTGG	2 cut(s)	494, 526
AluBI	AGCT	9 cut(s)	11, 134, 143, 308, 565, 626, 680, 699, 912
AluI	AGCT	9 cut(s)	11, 134, 143, 308, 565, 626, 680, 699, 912
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	1 cut(s)	295
AlwI	GGATC	2 cut(s)	221, 934
ApeKI	GCWGC	8 cut(s)	131, 140, 308, 311, 618, 879, 882, 918
ApoI	RAATTY	2 cut(s)	748, 847
ArsI	GACNNNNNNTTYG	2 cut(s)	811, 843
AspS9I	GGNCC	4 cut(s)	44, 98, 484, 668
AsuC2I	CCSGG	1 cut(s)	944
AvaII	GGWCC	4 cut(s)	44, 98, 484, 668
BaeGI	GKGCMC	1 cut(s)	860
BanII	GRGCYC	2 cut(s)	13, 836
BarI	GAAGNNNNNNTAC	2 cut(s)	579, 611
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	8 cut(s)	143, 152, 295, 323, 630, 891, 894, 930
BccI	CCATC	2 cut(s)	281, 496
BciT130I	CCWGG	5 cut(s)	102, 153, 446, 464, 638
BclI	TGATCA	1 cut(s)	576
BcnI	CCSGG	1 cut(s)	944
BcoDI	GTCTC	1 cut(s)	295
BfaI	CTAG	1 cut(s)	708
BfmI	CTRYAG	1 cut(s)	309
BglII	AGATCT	1 cut(s)	901
BisI	GCNGC	8 cut(s)	132, 141, 309, 312, 619, 880, 883, 919
BlsI	GCNGC	8 cut(s)	133, 142, 310, 313, 620, 881, 884, 920
BmcAI	AGTACT	1 cut(s)	715
Bme1390I	CCNGG	6 cut(s)	102, 153, 446, 464, 638, 944
Bme18I	GGWCC	4 cut(s)	44, 98, 484, 668
BmgT120I	GGNCC	4 cut(s)	44, 98, 484, 668
BmiI	GGNNCC	3 cut(s)	283, 486, 670
BmrFI	CCNGG	6 cut(s)	102, 153, 446, 464, 638, 944
BpmI	CTGGAG	1 cut(s)	525
BpuEI	CTTGAG	1 cut(s)	20
BpuMI	CCSGG	1 cut(s)	944
Bsa29I	ATCGAT	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	821
BsaJI	CCNNGG	5 cut(s)	47, 277, 462, 636, 954
BsaXI	ACNNNNNCTCC	2 cut(s)	226, 256
Bsc4I	CCNNNNNNNGG	1 cut(s)	445
Bse1I	ACTGG	3 cut(s)	188, 230, 478
Bse3DI	GCAATG	1 cut(s)	787
BseBI	CCWGG	5 cut(s)	102, 153, 446, 464, 638
BseCI	ATCGAT	1 cut(s)	225
BseDI	CCNNGG	5 cut(s)	47, 277, 462, 636, 954
BseGI	GGATG	4 cut(s)	195, 269, 273, 898
BseLI	CCNNNNNNNGG	1 cut(s)	445
BseMI	GCAATG	1 cut(s)	787
BseMII	CTCAG	2 cut(s)	521, 726
BseNI	ACTGG	3 cut(s)	188, 230, 478
BseSI	GKGCMC	1 cut(s)	860
BseXI	GCAGC	8 cut(s)	143, 152, 295, 323, 630, 891, 894, 930
BseYI	CCCAGC	2 cut(s)	304, 622
BshVI	ATCGAT	1 cut(s)	225
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	944
BslFI	GGGAC	3 cut(s)	470, 635, 654
BslI	CCNNNNNNNGG	1 cut(s)	445
BsmAI	GTCTC	1 cut(s)	295
BsmFI	GGGAC	3 cut(s)	470, 635, 654
Bsp1286I	GDGCHC	3 cut(s)	13, 836, 860
Bsp143I	GATC	5 cut(s)	226, 253, 576, 901, 939
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	2 cut(s)	379, 419
BspCNI	CTCAG	2 cut(s)	520, 727
BspDI	ATCGAT	1 cut(s)	225
BspHI	TCATGA	1 cut(s)	790
BspLI	GGNNCC	3 cut(s)	283, 486, 670
BspMAI	CTGCAG	1 cut(s)	313
BspPI	GGATC	2 cut(s)	221, 934
BsrDI	GCAATG	1 cut(s)	787
BsrI	ACTGG	3 cut(s)	188, 230, 478
BssECI	CCNNGG	5 cut(s)	47, 277, 462, 636, 954
BssMI	GATC	5 cut(s)	226, 253, 576, 901, 939
BssNI	GRCGYC	1 cut(s)	821
BssT1I	CCWWGG	2 cut(s)	47, 954
Bst2UI	CCWGG	5 cut(s)	102, 153, 446, 464, 638
Bst4CI	ACNGT	4 cut(s)	375, 498, 730, 950
Bst6I	CTCTTC	1 cut(s)	527
BstACI	GRCGYC	1 cut(s)	821
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstC8I	GCNNGC	2 cut(s)	145, 149
BstDEI	CTNAG	2 cut(s)	507, 735
BstDSI	CCRYGG	1 cut(s)	47
BstEII	GGTNACC	1 cut(s)	385
BstF5I	GGATG	4 cut(s)	195, 269, 273, 898
BstKTI	GATC	5 cut(s)	229, 256, 579, 904, 942
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	5 cut(s)	226, 253, 576, 901, 939
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 140, 918
BstNI	CCWGG	5 cut(s)	102, 153, 446, 464, 638
BstNSI	RCATGY	2 cut(s)	607, 976
BstPI	GGTNACC	1 cut(s)	385
BstSCI	CCNGG	6 cut(s)	100, 151, 444, 462, 636, 942
BstSFI	CTRYAG	1 cut(s)	309
BstSLI	GKGCMC	1 cut(s)	860
BstV1I	GCAGC	8 cut(s)	143, 152, 295, 323, 630, 891, 894, 930
BstX2I	RGATCY	2 cut(s)	901, 939
BstXI	CCANNNNNNTGG	1 cut(s)	108
BstYI	RGATCY	2 cut(s)	901, 939
Bsu15I	ATCGAT	1 cut(s)	225
BsuTUI	ATCGAT	1 cut(s)	225
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	4 cut(s)	195, 269, 273, 898
BtsIMutI	CAGTG	1 cut(s)	401
Cac8I	GCNNGC	2 cut(s)	145, 149
CciI	TCATGA	1 cut(s)	790
Cfr13I	GGNCC	4 cut(s)	44, 98, 484, 668
ClaI	ATCGAT	1 cut(s)	225
CseI	GACGC	1 cut(s)	829
CsiI	ACCWGGT	1 cut(s)	444
Csp6I	GTAC	3 cut(s)	704, 714, 951
CviAII	CATG	7 cut(s)	48, 95, 547, 568, 604, 791, 973
CviQI	GTAC	3 cut(s)	704, 714, 951
DdeI	CTNAG	2 cut(s)	507, 735
DpnI	GATC	5 cut(s)	228, 255, 578, 903, 941
DpnII	GATC	5 cut(s)	226, 253, 576, 901, 939
DraI	TTTAAA	1 cut(s)	771
Eam1104I	CTCTTC	1 cut(s)	527
EarI	CTCTTC	1 cut(s)	527
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	2 cut(s)	47, 954
Eco24I	GRGCYC	2 cut(s)	13, 836
Eco32I	GATATC	1 cut(s)	961
Eco47I	GGWCC	4 cut(s)	44, 98, 484, 668
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	2 cut(s)	78, 598
Eco91I	GGTNACC	1 cut(s)	385
EcoICRI	GAGCTC	1 cut(s)	11
EcoO65I	GGTNACC	1 cut(s)	385
EcoRI	GAATTC	1 cut(s)	847
EcoRII	CCWGG	5 cut(s)	100, 151, 444, 462, 636
EcoRV	GATATC	1 cut(s)	961
EcoT14I	CCWWGG	2 cut(s)	47, 954
EcoT38I	GRGCYC	2 cut(s)	13, 836
ErhI	CCWWGG	2 cut(s)	47, 954
FaeI	CATG	7 cut(s)	51, 98, 550, 571, 607, 794, 976
FalI	AAGNNNNNCTT	1 cut(s)	30
FaqI	GGGAC	3 cut(s)	470, 635, 654
FatI	CATG	7 cut(s)	47, 94, 546, 567, 603, 790, 972
FauI	CCCGC	1 cut(s)	426
FbaI	TGATCA	1 cut(s)	576
FblI	GTMKAC	1 cut(s)	818
Fnu4HI	GCNGC	8 cut(s)	132, 141, 309, 312, 619, 880, 883, 919
FokI	GGATG	4 cut(s)	182, 256, 260, 905
FriOI	GRGCYC	2 cut(s)	13, 836
Fsp4HI	GCNGC	8 cut(s)	132, 141, 309, 312, 619, 880, 883, 919
FspBI	CTAG	1 cut(s)	708
GluI	GCNGC	8 cut(s)	132, 141, 309, 312, 619, 880, 883, 919
GsaI	CCCAGC	2 cut(s)	308, 626
GsuI	CTGGAG	1 cut(s)	525
HapII	CCGG	1 cut(s)	944
HgaI	GACGC	1 cut(s)	829
Hin1I	GRCGYC	1 cut(s)	821
Hin1II	CATG	7 cut(s)	51, 98, 550, 571, 607, 794, 976
HincII	GTYRAC	2 cut(s)	79, 819
HindII	GTYRAC	2 cut(s)	79, 819
HinfI	GANTC	3 cut(s)	33, 222, 806
HpaII	CCGG	1 cut(s)	944
Hpy166II	GTNNAC	2 cut(s)	79, 819
Hpy188I	TCNGA	3 cut(s)	58, 200, 215
Hpy8I	GTNNAC	2 cut(s)	79, 819
Hpy99I	CGWCG	1 cut(s)	823
HpyAV	CCTTC	1 cut(s)	581
HpyCH4III	ACNGT	4 cut(s)	375, 498, 730, 950
HpyCH4V	TGCA	5 cut(s)	140, 311, 453, 571, 918
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 140, 918
HpyF3I	CTNAG	2 cut(s)	507, 735
Hsp92I	GRCGYC	1 cut(s)	821
Hsp92II	CATG	7 cut(s)	51, 98, 550, 571, 607, 794, 976
Ksp22I	TGATCA	1 cut(s)	576
Kzo9I	GATC	5 cut(s)	226, 253, 576, 901, 939
LmnI	GCTCC	1 cut(s)	16
Lsp1109I	GCAGC	8 cut(s)	143, 152, 295, 323, 630, 891, 894, 930
MabI	ACCWGGT	1 cut(s)	444
MaeI	CTAG	1 cut(s)	708
MaeIII	GTNAC	6 cut(s)	20, 113, 232, 385, 399, 492
MalI	GATC	5 cut(s)	228, 255, 578, 903, 941
MboI	GATC	5 cut(s)	226, 253, 576, 901, 939
MboII	GAAGA	7 cut(s)	18, 71, 74, 168, 248, 514, 843
MfeI	CAATTG	2 cut(s)	106, 761
MflI	RGATCY	2 cut(s)	901, 939
MhlI	GDGCHC	3 cut(s)	13, 836, 860
MluCI	AATT	7 cut(s)	106, 655, 661, 688, 748, 761, 847
MlyI	GAGTC	1 cut(s)	27
MmeI	TCCRAC	1 cut(s)	633
MnlI	CCTC	6 cut(s)	128, 260, 287, 516, 834, 883
MseI	TTAA	3 cut(s)	357, 770, 786
MslI	CAYNNNNRTG	1 cut(s)	572
MspA1I	CMGCKG	1 cut(s)	308
MspI	CCGG	1 cut(s)	944
MspR9I	CCNGG	6 cut(s)	102, 153, 446, 464, 638, 944
MunI	CAATTG	2 cut(s)	106, 761
MvaI	CCWGG	5 cut(s)	102, 153, 446, 464, 638
MwoI	GCNNNNNNNGC	3 cut(s)	137, 140, 918
NciI	CCSGG	1 cut(s)	944
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	5 cut(s)	226, 253, 576, 901, 939
NlaIII	CATG	7 cut(s)	51, 98, 550, 571, 607, 794, 976
NlaIV	GGNNCC	3 cut(s)	283, 486, 670
NmuCI	GTSAC	3 cut(s)	20, 232, 399
NspI	RCATGY	2 cut(s)	607, 976
PagI	TCATGA	1 cut(s)	790
PciI	ACATGT	2 cut(s)	603, 972
PcsI	WCGNNNNNNNCGW	1 cut(s)	827
PfeI	GAWTC	2 cut(s)	222, 806
PfoI	TCCNGGA	1 cut(s)	942
PkrI	GCNGC	8 cut(s)	133, 142, 310, 313, 620, 881, 884, 920
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
PscI	ACATGT	2 cut(s)	603, 972
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	5 cut(s)	100, 151, 444, 462, 636
PspEI	GGTNACC	1 cut(s)	385
PspFI	CCCAGC	2 cut(s)	304, 622
PspGI	CCWGG	5 cut(s)	100, 151, 444, 462, 636
PspN4I	GGNNCC	3 cut(s)	283, 486, 670
PspPI	GGNCC	4 cut(s)	44, 98, 484, 668
PstI	CTGCAG	1 cut(s)	313
PsuI	RGATCY	2 cut(s)	901, 939
PvuII	CAGCTG	1 cut(s)	308
RsaI	GTAC	3 cut(s)	705, 715, 952
RsaNI	GTAC	3 cut(s)	704, 714, 951
RseI	CAYNNNNRTG	1 cut(s)	572
SacI	GAGCTC	1 cut(s)	13
SalI	GTCGAC	1 cut(s)	817
SaqAI	TTAA	3 cut(s)	357, 770, 786
SatI	GCNGC	8 cut(s)	132, 141, 309, 312, 619, 880, 883, 919
Sau3AI	GATC	5 cut(s)	226, 253, 576, 901, 939
Sau96I	GGNCC	4 cut(s)	44, 98, 484, 668
ScaI	AGTACT	1 cut(s)	715
SchI	GAGTC	1 cut(s)	27
ScrFI	CCNGG	6 cut(s)	102, 153, 446, 464, 638, 944
SduI	GDGCHC	3 cut(s)	13, 836, 860
SexAI	ACCWGGT	1 cut(s)	444
SfcI	CTRYAG	1 cut(s)	309
SinI	GGWCC	4 cut(s)	44, 98, 484, 668
SmiMI	CAYNNNNRTG	1 cut(s)	572
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	7 cut(s)	106, 655, 661, 688, 748, 761, 847
SsiI	CCGC	2 cut(s)	379, 419
SspI	AATATT	1 cut(s)	457
SspMI	CTAG	1 cut(s)	708
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	6 cut(s)	100, 151, 444, 462, 636, 942
StyI	CCWWGG	2 cut(s)	47, 954
TaaI	ACNGT	4 cut(s)	375, 498, 730, 950
TaqI	TCGA	4 cut(s)	225, 252, 818, 830
TaqII	GACCGA	1 cut(s)	656
TasI	AATT	7 cut(s)	106, 655, 661, 688, 748, 761, 847
TatI	WGTACW	1 cut(s)	713
TfiI	GAWTC	2 cut(s)	222, 806
Tru1I	TTAA	3 cut(s)	357, 770, 786
Tru9I	TTAA	3 cut(s)	357, 770, 786
TscAI	CASTG	1 cut(s)	408
TseFI	GTSAC	3 cut(s)	20, 232, 399
TseI	GCWGC	8 cut(s)	131, 140, 308, 311, 618, 879, 882, 918
Tsp45I	GTSAC	3 cut(s)	20, 232, 399
TspDTI	ATGAA	1 cut(s)	741
TspRI	CASTG	1 cut(s)	408
VpaK11BI	GGWCC	4 cut(s)	44, 98, 484, 668
XapI	RAATTY	2 cut(s)	748, 847
XceI	RCATGY	2 cut(s)	607, 976
XmiI	GTMKAC	1 cut(s)	818
XspI	CTAG	1 cut(s)	708
ZrmI	AGTACT	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.