Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0014777

Physical Location & Seq

Genomic Coordinates Reverse (-)

22736849 .. 22738446

Gene Structure 1598 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G228500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGGAAGAGCTCCTTGCTGTGATAAAAATGGACTCAAGAAAGGTCCATGGACTACTGAAGAAGATGCTTTGCTCGTCGATTACATTCAGACACACGGAACGGGGAATTGGCGAAACCTTCCGAAGAACGCAGGGCTTGAAAGATGTGGGAAGAGTTGCCGCCTTAGATGGACAAACTACCTGAGACCTGATATAAAGAGAGGAAGATTCTCCTTTGAAGAAGAAGAGACTATAATCCAGCTACATAGCATCCTGGGAAACAAATGGTCAGCTATTGCAGCTCGGTTGCCAGGGAGGACAGACAATGAGATCAAGAACTACTGGAACACGCATATCAGAAAGAGGCTCCTTAAAATGGGAATTGATCCGGTGACACATGCTCCACGAATCGACCTTCTTGATCTGTCCTCAATTCTCAGCTCATATATGTGCAACAATCCAGCTGCTGCCCTTCTTAATTTGTCAAGCTTGCTGAGTAGCACCCAGCAGCAGCAACCGCTTGTCAATCCAGAGCTGCTAAGGCTGGCAACCAATCTGTTGTCAATCAAACAAGAAAACCCAGAATTGTGTTCCCAAAACTATAATCTCCATGATCAAAACCAGCTCTGCAATTCCCAGCAGCAAAATAGCCAAGTGCTCCCGCCTTTACAGTCCCATGACCAGCTCCAAGATCTGATCCAAGGGGACTTTTCTGCTGACGTGGCGAAAATGAAACAGCTTATGCAAGTGATCAATGCGGAAGGGTACTCACCCAACATGACCAACTTTAACTGCCCCACTGTTTCCCAAGAAAATATGGTTCATTCAAATTTGGGGGCTGATCATCAAACTGCTGTTTGCCAACCAAGCTATGTGCCTTGCACTACTTCAAGTGATCCCACCAACATTCCTGATTTGCCCGAAAATTATTTCCAATCTTTGAATTACAACAGAAGTAGCGATTTCAGCTTCGATTCTGTTATGTCGACGCCTTATTCAAGCCCCACCGCATTGAATTCATCGGGAACATACATAAACAGCAGCACAGAGGATGAAAAAGAAAGCTATTGCAGCGACTGGTTGAAGTTTGAAATCCCAGAGAGTGTTTTGGATATTAACGATATTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009825 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016049 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0040007 GO:0042221 GO:0042335 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080091 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

370

Amino Acids

41.57

Weight (kDa)

5.22

Isoelectric Point (pI)

51.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014777)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g44400 FvH4_6g44400
malus_domestica	MD09G1097700.v1.1 MD17G1086000.v1.1
prunus_persica	Prupe.3G228500_v2.0.a1
pyrus_communis	pycom09g02180 pycom17g08350
rosa_chinensis	RchiOBHm_Chr2g0161391
rosa_multiflora	Rmu_sc0004030.1_g000007 Rmu_sc0010382.1_g000002
rosa_roxburghii	Rroxscaffold_2G00088880
rosa_rugosa	Rorug02G0488700
rosa_samantha	Rh2AG555100 Rh2BG568400 Rh2CG539000 Rh2DG578000
rosa_wichuraiana	Rw2G045930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	965
AciI	CCGC	5 cut(s)	160, 497, 641, 737, 987
AclWI	GGATC	3 cut(s)	359, 670, 869
AcsI	RAATTY	2 cut(s)	808, 994
AcuI	CTGAAG	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	968
AfaI	GTAC	1 cut(s)	746
AfiI	CCNNNNNNNGG	1 cut(s)	355
AgsI	TTSAA	9 cut(s)	140, 218, 807, 870, 922, 978, 994, 1063, 1070
AjiI	CACGTC	1 cut(s)	700
AjnI	CCWGG	2 cut(s)	252, 289
AjuI	GAANNNNNNNTTGG	2 cut(s)	91, 123
Alw21I	GWGCWC	2 cut(s)	13, 639
Alw26I	GTCTC	2 cut(s)	178, 221
AlwI	GGATC	3 cut(s)	359, 670, 869
AlwNI	CAGNNNCTG	2 cut(s)	446, 1056
ApeKI	GCWGC	9 cut(s)	278, 443, 446, 487, 490, 514, 619, 1020, 1050
ApoI	RAATTY	2 cut(s)	808, 994
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	2 cut(s)	382, 741
AvaII	GGWCC	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	13
Bbv12I	GWGCWC	2 cut(s)	13, 639
BbvI	GCAGC	9 cut(s)	290, 430, 433, 499, 501, 502, 631, 1032, 1062
BccI	CCATC	1 cut(s)	162
BciT130I	CCWGG	2 cut(s)	254, 291
BclI	TGATCA	3 cut(s)	592, 729, 820
BcoDI	GTCTC	2 cut(s)	178, 221
BglII	AGATCT	1 cut(s)	670
Bme1390I	CCNGG	2 cut(s)	254, 291
Bme18I	GGWCC	1 cut(s)	44
BmgBI	CACGTC	1 cut(s)	700
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	347
BmrFI	CCNGG	2 cut(s)	254, 291
BmsI	GCATC	2 cut(s)	55, 258
Bpu10I	CCTNAGC	1 cut(s)	518
BpuEI	CTTGAG	1 cut(s)	20
BsaHI	GRCGYC	1 cut(s)	968
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	4 cut(s)	47, 253, 290, 679
BsaWI	WCCGGW	1 cut(s)	367
BsaXI	ACNNNNNCTCC	2 cut(s)	364, 394
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse1I	ACTGG	2 cut(s)	326, 1061
BseBI	CCWGG	2 cut(s)	254, 291
BseDI	CCNNGG	4 cut(s)	47, 253, 290, 679
BseGI	GGATG	2 cut(s)	249, 1036
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMII	CTCAG	3 cut(s)	173, 430, 464
BseNI	ACTGG	2 cut(s)	326, 1061
BseXI	GCAGC	9 cut(s)	290, 430, 433, 499, 501, 502, 631, 1032, 1062
BseYI	CCCAGC	2 cut(s)	483, 615
BsiHKAI	GWGCWC	2 cut(s)	13, 639
BsiSI	CCGG	1 cut(s)	368
BslFI	GGGAC	2 cut(s)	637, 698
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmAI	GTCTC	2 cut(s)	178, 221
BsmFI	GGGAC	2 cut(s)	637, 698
Bso31I	GGTCTC	1 cut(s)	178
Bsp1286I	GDGCHC	2 cut(s)	13, 639
Bsp143I	GATC	9 cut(s)	309, 364, 400, 592, 670, 675, 729, 820, 874
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	5 cut(s)	160, 497, 641, 737, 987
BspCNI	CTCAG	3 cut(s)	174, 429, 465
BspLI	GGNNCC	1 cut(s)	347
BspPI	GGATC	3 cut(s)	359, 670, 869
BspTNI	GGTCTC	1 cut(s)	178
BsrI	ACTGG	2 cut(s)	326, 1061
BssECI	CCNNGG	4 cut(s)	47, 253, 290, 679
BssMI	GATC	9 cut(s)	309, 364, 400, 592, 670, 675, 729, 820, 874
BssNI	GRCGYC	1 cut(s)	968
BssT1I	CCWWGG	2 cut(s)	47, 679
Bst2UI	CCWGG	2 cut(s)	254, 291
Bst4CI	ACNGT	2 cut(s)	651, 781
Bst6I	CTCTTC	2 cut(s)	146, 219
BstACI	GRCGYC	1 cut(s)	968
BstC8I	GCNNGC	2 cut(s)	470, 525
BstDEI	CTNAG	5 cut(s)	164, 182, 416, 473, 518
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	249, 1036
BstKTI	GATC	9 cut(s)	312, 367, 403, 595, 673, 678, 732, 823, 877
BstMAI	GTCTC	2 cut(s)	178, 221
BstMBI	GATC	9 cut(s)	309, 364, 400, 592, 670, 675, 729, 820, 874
BstMWI	GCNNNNNNNGC	7 cut(s)	278, 496, 520, 701, 846, 945, 1050
BstNI	CCWGG	2 cut(s)	254, 291
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	2 cut(s)	252, 289
BstV1I	GCAGC	9 cut(s)	290, 430, 433, 499, 501, 502, 631, 1032, 1062
BstX2I	RGATCY	1 cut(s)	670
BstYI	RGATCY	1 cut(s)	670
BtgI	CCRYGG	1 cut(s)	47
BtrI	CACGTC	1 cut(s)	700
BtsCI	GGATG	2 cut(s)	249, 1036
BtsIMutI	CAGTG	1 cut(s)	777
Cac8I	GCNNGC	2 cut(s)	470, 525
CaiI	CAGNNNCTG	2 cut(s)	446, 1056
Cfr13I	GGNCC	1 cut(s)	44
CseI	GACGC	1 cut(s)	976
Csp6I	GTAC	1 cut(s)	745
CviAII	CATG	5 cut(s)	48, 377, 590, 656, 757
CviQI	GTAC	1 cut(s)	745
DdeI	CTNAG	5 cut(s)	164, 182, 416, 473, 518
DpnI	GATC	9 cut(s)	311, 366, 402, 594, 672, 677, 731, 822, 876
DpnII	GATC	9 cut(s)	309, 364, 400, 592, 670, 675, 729, 820, 874
Eam1104I	CTCTTC	2 cut(s)	146, 219
EarI	CTCTTC	2 cut(s)	146, 219
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	2 cut(s)	47, 679
Eco24I	GRGCYC	1 cut(s)	13
Eco31I	GGTCTC	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	44
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	78
EcoICRI	GAGCTC	1 cut(s)	11
EcoRI	GAATTC	1 cut(s)	994
EcoRII	CCWGG	2 cut(s)	252, 289
EcoT14I	CCWWGG	2 cut(s)	47, 679
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	2 cut(s)	47, 679
FaeI	CATG	5 cut(s)	51, 380, 593, 659, 760
FalI	AAGNNNNNCTT	1 cut(s)	30
FaqI	GGGAC	2 cut(s)	637, 698
FatI	CATG	5 cut(s)	47, 376, 589, 655, 756
FauI	CCCGC	1 cut(s)	648
FbaI	TGATCA	3 cut(s)	592, 729, 820
FblI	GTMKAC	1 cut(s)	965
FokI	GGATG	2 cut(s)	236, 1043
FriOI	GRGCYC	1 cut(s)	13
GsaI	CCCAGC	2 cut(s)	487, 619
HapII	CCGG	1 cut(s)	368
HgaI	GACGC	1 cut(s)	976
Hin1I	GRCGYC	1 cut(s)	968
Hin1II	CATG	5 cut(s)	51, 380, 593, 659, 760
HincII	GTYRAC	1 cut(s)	966
HindII	GTYRAC	1 cut(s)	966
HindIII	AAGCTT	1 cut(s)	466
HinfI	GANTC	4 cut(s)	33, 207, 387, 953
HpaII	CCGG	1 cut(s)	368
HphI	GGTGA	2 cut(s)	382, 741
Hpy166II	GTNNAC	1 cut(s)	966
Hpy188I	TCNGA	4 cut(s)	90, 123, 338, 675
Hpy188III	TCNNGA	6 cut(s)	37, 313, 398, 509, 890, 1002
Hpy8I	GTNNAC	1 cut(s)	966
Hpy99I	CGWCG	2 cut(s)	80, 970
HpyAV	CCTTC	4 cut(s)	128, 404, 461, 734
HpyCH4III	ACNGT	2 cut(s)	651, 781
HpyCH4IV	ACGT	1 cut(s)	699
HpyCH4V	TGCA	6 cut(s)	278, 432, 609, 724, 861, 1050
HpyF10VI	GCNNNNNNNGC	7 cut(s)	278, 496, 520, 701, 846, 945, 1050
HpyF3I	CTNAG	5 cut(s)	164, 182, 416, 473, 518
HpySE526I	ACGT	1 cut(s)	699
Hsp92I	GRCGYC	1 cut(s)	968
Hsp92II	CATG	5 cut(s)	51, 380, 593, 659, 760
Ksp22I	TGATCA	3 cut(s)	592, 729, 820
Kzo9I	GATC	9 cut(s)	309, 364, 400, 592, 670, 675, 729, 820, 874
LmnI	GCTCC	5 cut(s)	16, 351, 385, 642, 669
Lsp1109I	GCAGC	9 cut(s)	290, 430, 433, 499, 501, 502, 631, 1032, 1062
LweI	GCATC	2 cut(s)	55, 258
MaeII	ACGT	1 cut(s)	699
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	9 cut(s)	311, 366, 402, 594, 672, 677, 731, 822, 876
MboI	GATC	9 cut(s)	309, 364, 400, 592, 670, 675, 729, 820, 874
MboII	GAAGA	9 cut(s)	18, 71, 74, 136, 163, 216, 230, 233, 236
MflI	RGATCY	1 cut(s)	670
MhlI	GDGCHC	2 cut(s)	13, 639
MlyI	GAGTC	1 cut(s)	27
MnlI	CCTC	5 cut(s)	194, 288, 336, 418, 1021
MseI	TTAA	4 cut(s)	351, 456, 768, 1095
MslI	CAYNNNNRTG	1 cut(s)	427
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	1 cut(s)	368
MspR9I	CCNGG	2 cut(s)	254, 291
MvaI	CCWGG	2 cut(s)	254, 291
MwoI	GCNNNNNNNGC	7 cut(s)	278, 496, 520, 701, 846, 945, 1050
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	9 cut(s)	309, 364, 400, 592, 670, 675, 729, 820, 874
NlaIII	CATG	5 cut(s)	51, 380, 593, 659, 760
NlaIV	GGNNCC	1 cut(s)	347
NmuCI	GTSAC	1 cut(s)	370
NspI	RCATGY	1 cut(s)	380
PfeI	GAWTC	3 cut(s)	207, 387, 953
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	2 cut(s)	252, 289
PspFI	CCCAGC	2 cut(s)	483, 615
PspGI	CCWGG	2 cut(s)	252, 289
PspN4I	GGNNCC	1 cut(s)	347
PspPI	GGNCC	1 cut(s)	44
PstNI	CAGNNNCTG	2 cut(s)	446, 1056
PsuI	RGATCY	1 cut(s)	670
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	1 cut(s)	746
RsaNI	GTAC	1 cut(s)	745
RseI	CAYNNNNRTG	1 cut(s)	427
SacI	GAGCTC	1 cut(s)	13
SalI	GTCGAC	1 cut(s)	964
SaqAI	TTAA	4 cut(s)	351, 456, 768, 1095
Sau3AI	GATC	9 cut(s)	309, 364, 400, 592, 670, 675, 729, 820, 874
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	1 cut(s)	27
ScrFI	CCNGG	2 cut(s)	254, 291
SduI	GDGCHC	2 cut(s)	13, 639
SfaNI	GCATC	2 cut(s)	55, 258
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	427
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
SsiI	CCGC	5 cut(s)	160, 497, 641, 737, 987
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	2 cut(s)	252, 289
StyI	CCWWGG	2 cut(s)	47, 679
TaaI	ACNGT	2 cut(s)	651, 781
TaiI	ACGT	1 cut(s)	702
TaqI	TCGA	4 cut(s)	78, 390, 951, 965
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	3 cut(s)	207, 387, 953
Tru1I	TTAA	4 cut(s)	351, 456, 768, 1095
Tru9I	TTAA	4 cut(s)	351, 456, 768, 1095
TscAI	CASTG	1 cut(s)	784
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	9 cut(s)	278, 443, 446, 487, 490, 514, 619, 1020, 1050
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	4 cut(s)	725, 791, 987, 1047
TspGWI	ACGGA	1 cut(s)	111
TspRI	CASTG	1 cut(s)	784
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	2 cut(s)	808, 994
XceI	RCATGY	1 cut(s)	380
XmiI	GTMKAC	1 cut(s)	965

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.