Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014777

Physical Location & Seq

Genomic Coordinates Reverse (-)

61833145 .. 61835939

Gene Structure 2795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0488700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGTATGATATGATGATGATTCCGGGTTCTTCCTGCTCTCTCTTCGTCTCTGTGAAAATGAAGACTGTTGTAGAAATGGCCCAATTCGGAGTAAAATTGTGCTACCGTGAGCACACCGTGATCATTGTTACAAGAGTTTTCTTAGCGGTGACCGCCCAAGTCCTCTGCAGCTACATTACTCTTCCTTGTAACACAGAGTATGATGCTCATGATAAACCCCAAGAAGAAACTGTCAACCCTATGGTCGATGGTGGGACTGAAGGTTTTCAAGGACATGCCAGGGTCATTATGCCAGGGATCAGTCCATGCTTTGAGTGTACAATCTGGCTTTTCCCCCCTCAAGTGAAGTTCCCTTTATGCACACTTGCAGAAATCCCTAGAACTGCTGCTCATTGTATTGAATATGCTCACCTAATTAAATGGGATGAGGCTAACAAGAGAGCTGAGCTGTTTGGTATTCCAGAGTTACATTGTCTCTCACTCAGTTCCAATGTGGATGAAGGATCGGAAAGGATACATCAGTTCCAAAATGAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009825 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016049 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0040007 GO:0042221 GO:0042335 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080091 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

179

Amino Acids

20.17

Weight (kDa)

5.29

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mlo	PF03094	25 - 63	1.9e-08	Mlo family
ThiF	PF00899	79 - 132	6.6e-07	ThiF family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014777)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g44400 FvH4_6g44400
malus_domestica	MD09G1097700.v1.1 MD17G1086000.v1.1
prunus_persica	Prupe.3G228500_v2.0.a1
pyrus_communis	pycom09g02180 pycom17g08350
rosa_chinensis	RchiOBHm_Chr2g0161391
rosa_multiflora	Rmu_sc0004030.1_g000007 Rmu_sc0010382.1_g000002
rosa_roxburghii	Rroxscaffold_2G00088880
rosa_rugosa	Rorug02G0488700
rosa_samantha	Rh2AG555100 Rh2BG568400 Rh2CG539000 Rh2DG578000
rosa_wichuraiana	Rw2G045930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	146, 153
AclWI	GGATC	2 cut(s)	305, 511
AcuI	CTGAAG	1 cut(s)	279
AdeI	CACNNNGTG	1 cut(s)	118
AfaI	GTAC	1 cut(s)	319
AgsI	TTSAA	2 cut(s)	269, 401
AjnI	CCWGG	2 cut(s)	278, 292
AluBI	AGCT	3 cut(s)	171, 443, 448
AluI	AGCT	3 cut(s)	171, 443, 448
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	2 cut(s)	52, 479
AlwI	GGATC	2 cut(s)	305, 511
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	2 cut(s)	168, 386
Asp700I	GAANNNNTTC	1 cut(s)	264
AspS9I	GGNCC	1 cut(s)	79
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	2 cut(s)	160, 401
BaeI	ACNNNNGTAYC	2 cut(s)	506, 539
BbsI	GAAGAC	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	180, 373
BccI	CCATC	1 cut(s)	242
BciT130I	CCWGG	2 cut(s)	280, 294
BciVI	GTATCC	1 cut(s)	507
BclI	TGATCA	1 cut(s)	120
BcnI	CCSGG	1 cut(s)	24
BcoDI	GTCTC	2 cut(s)	52, 479
BfaI	CTAG	1 cut(s)	378
BfmI	CTRYAG	1 cut(s)	166
BfuI	GTATCC	1 cut(s)	507
BisI	GCNGC	2 cut(s)	169, 387
BlpI	GCTNAGC	1 cut(s)	444
BlsI	GCNGC	2 cut(s)	170, 388
Bme1390I	CCNGG	3 cut(s)	24, 280, 294
BmgT120I	GGNCC	1 cut(s)	79
BmrFI	CCNGG	3 cut(s)	24, 280, 294
BmsI	GCATC	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	68
Bpu1102I	GCTNAGC	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	324
BpuMI	CCSGG	1 cut(s)	24
BsaJI	CCNNGG	2 cut(s)	279, 293
BseBI	CCWGG	2 cut(s)	280, 294
BseDI	CCNNGG	2 cut(s)	279, 293
BseGI	GGATG	2 cut(s)	430, 502
BseMII	CTCAG	2 cut(s)	435, 496
BseXI	GCAGC	2 cut(s)	180, 373
BshFI	GGCC	1 cut(s)	80
BsiHKAI	GWGCWC	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	23
BslFI	GGGAC	1 cut(s)	268
BsmAI	GTCTC	2 cut(s)	52, 479
BsmBI	CGTCTC	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp1407I	TGTACA	1 cut(s)	317
Bsp143I	GATC	3 cut(s)	120, 297, 503
Bsp1720I	GCTNAGC	1 cut(s)	444
BspACI	CCGC	2 cut(s)	146, 153
BspANI	GGCC	1 cut(s)	80
BspCNI	CTCAG	2 cut(s)	436, 495
BspHI	TCATGA	1 cut(s)	208
BspMAI	CTGCAG	1 cut(s)	170
BspPI	GGATC	2 cut(s)	305, 511
BsrGI	TGTACA	1 cut(s)	317
BssECI	CCNNGG	2 cut(s)	279, 293
BssMI	GATC	3 cut(s)	120, 297, 503
Bst2UI	CCWGG	2 cut(s)	280, 294
Bst4CI	ACNGT	4 cut(s)	67, 107, 118, 232
Bst6I	CTCTTC	2 cut(s)	47, 186
BstAUI	TGTACA	1 cut(s)	317
BstDEI	CTNAG	3 cut(s)	142, 444, 482
BstEII	GGTNACC	1 cut(s)	148
BstF5I	GGATG	2 cut(s)	430, 502
BstKTI	GATC	3 cut(s)	123, 300, 506
BstMAI	GTCTC	2 cut(s)	52, 479
BstMBI	GATC	3 cut(s)	120, 297, 503
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNI	CCWGG	2 cut(s)	280, 294
BstNSI	RCATGY	1 cut(s)	278
BstPI	GGTNACC	1 cut(s)	148
BstSCI	CCNGG	3 cut(s)	22, 278, 292
BstSFI	CTRYAG	1 cut(s)	166
BstV1I	GCAGC	2 cut(s)	180, 373
BstV2I	GAAGAC	1 cut(s)	68
BsuI	GTATCC	1 cut(s)	507
BsuRI	GGCC	1 cut(s)	80
BtsCI	GGATG	2 cut(s)	430, 502
CciI	TCATGA	1 cut(s)	208
Cfr13I	GGNCC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	318
CviAII	CATG	3 cut(s)	209, 275, 306
CviJI	RGCY	6 cut(s)	80, 171, 328, 431, 443, 448
CviKI_1	RGCY	6 cut(s)	80, 171, 328, 431, 443, 448
CviQI	GTAC	1 cut(s)	318
DdeI	CTNAG	3 cut(s)	142, 444, 482
DpnI	GATC	3 cut(s)	122, 299, 505
DpnII	GATC	3 cut(s)	120, 297, 503
DraIII	CACNNNGTG	1 cut(s)	118
Eam1104I	CTCTTC	2 cut(s)	47, 186
EarI	CTCTTC	2 cut(s)	47, 186
Eco57I	CTGAAG	1 cut(s)	279
Eco91I	GGTNACC	1 cut(s)	148
EcoO65I	GGTNACC	1 cut(s)	148
EcoRII	CCWGG	2 cut(s)	278, 292
Esp3I	CGTCTC	1 cut(s)	52
FaeI	CATG	3 cut(s)	212, 278, 309
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	3 cut(s)	208, 274, 305
FbaI	TGATCA	1 cut(s)	120
Fnu4HI	GCNGC	2 cut(s)	169, 387
FokI	GGATG	2 cut(s)	437, 509
Fsp4HI	GCNGC	2 cut(s)	169, 387
FspBI	CTAG	1 cut(s)	378
GluI	GCNGC	2 cut(s)	169, 387
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	1 cut(s)	23
Hin1II	CATG	3 cut(s)	212, 278, 309
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	1 cut(s)	19
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	2 cut(s)	160, 401
Hpy166II	GTNNAC	2 cut(s)	235, 318
Hpy188I	TCNGA	2 cut(s)	89, 508
Hpy188III	TCNNGA	2 cut(s)	209, 461
Hpy8I	GTNNAC	2 cut(s)	235, 318
HpyAV	CCTTC	2 cut(s)	254, 494
HpyCH4III	ACNGT	4 cut(s)	67, 107, 118, 232
HpyCH4V	TGCA	3 cut(s)	168, 360, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	3 cut(s)	142, 444, 482
Hsp92II	CATG	3 cut(s)	212, 278, 309
Ksp22I	TGATCA	1 cut(s)	120
Kzo9I	GATC	3 cut(s)	120, 297, 503
LpnPI	CCDG	8 cut(s)	36, 46, 265, 279, 292, 306, 310, 474
Lsp1109I	GCAGC	2 cut(s)	180, 373
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	1 cut(s)	378
MaeIII	GTNAC	4 cut(s)	127, 148, 188, 465
MalI	GATC	3 cut(s)	122, 299, 505
MboI	GATC	3 cut(s)	120, 297, 503
MboII	GAAGA	5 cut(s)	21, 34, 73, 173, 236
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	4 cut(s)	83, 95, 414, 535
MnlI	CCTC	3 cut(s)	173, 348, 421
MroXI	GAANNNNTTC	1 cut(s)	264
MseI	TTAA	1 cut(s)	417
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	3 cut(s)	24, 280, 294
MvaI	CCWGG	2 cut(s)	280, 294
MwoI	GCNNNNNNNGC	1 cut(s)	152
NciI	CCSGG	1 cut(s)	24
NdeII	GATC	3 cut(s)	120, 297, 503
NlaIII	CATG	3 cut(s)	212, 278, 309
NmuCI	GTSAC	1 cut(s)	148
NspI	RCATGY	1 cut(s)	278
PagI	TCATGA	1 cut(s)	208
PdmI	GAANNNNTTC	1 cut(s)	264
PfeI	GAWTC	1 cut(s)	19
PkrI	GCNGC	2 cut(s)	170, 388
Psp6I	CCWGG	2 cut(s)	278, 292
PspEI	GGTNACC	1 cut(s)	148
PspGI	CCWGG	2 cut(s)	278, 292
PspPI	GGNCC	1 cut(s)	79
PstI	CTGCAG	1 cut(s)	170
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	2 cut(s)	169, 387
Sau3AI	GATC	3 cut(s)	120, 297, 503
Sau96I	GGNCC	1 cut(s)	79
ScrFI	CCNGG	3 cut(s)	24, 280, 294
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	5 cut(s)	173, 265, 414, 445, 450
SfaNI	GCATC	1 cut(s)	193
SfcI	CTRYAG	1 cut(s)	166
SmlI	CTYRAG	1 cut(s)	339
SmoI	CTYRAG	1 cut(s)	339
Sse9I	AATT	4 cut(s)	83, 95, 414, 535
SsiI	CCGC	2 cut(s)	146, 153
SspMI	CTAG	1 cut(s)	378
StyD4I	CCNGG	3 cut(s)	22, 278, 292
TaaI	ACNGT	4 cut(s)	67, 107, 118, 232
TaqI	TCGA	1 cut(s)	246
TasI	AATT	4 cut(s)	83, 95, 414, 535
TatI	WGTACW	1 cut(s)	317
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	2 cut(s)	168, 386
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	2 cut(s)	74, 513
XceI	RCATGY	1 cut(s)	278
XmnI	GAANNNNTTC	1 cut(s)	264
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.