Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0014777

Physical Location & Seq

Genomic Coordinates Forward (+)

7095564 .. 7096906

Gene Structure 1343 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1097700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGGTAGAGCACCTTGCTGTGATAAAAATGGACTCAAGAAAGGTCCATGGACAACCGAAGAAGATGCCATGCTCGTCAATTATATTCAGAAGCATGGACCTGGAAATTGGCGAAACCTTCCAAAGAATGCAGGACTGCAGAGATGCGGGAAGAGTTGCCGCCTTAGATGGACTAACTACCTGAGACCAGATATAAAGAGAGGAAGGTTCTCCTTTGAGGAAGAAGAGACTATAATCCAACTACACAGCATTCTTGGAAACAAATGGTCAGGTATTGCAGCTCGCTTGCCAGGAAGGACGGACAATGAAATCAAGAACTACTGGAACACTCACATCCGAAAAAGGCTCCTCCGAATGGGAATCGATCCAGTGACTCATGCTCCACGCATCGATCTTCTTGATCTGTCCTCAATTCTCAGCTCATATGTGTGCAACAATCCAGTTGCTGCACTTCTCAATTTATCGAACTTGTTGAATAGTACACAGCAGCAGCAACCACTTGTTAATCCAGAACTGTTGAGGCTAGCAACAAGTCTGCTATCGATCAAACAAGAAAACCCGGAATTGTGTCCCCAAAATTATTCTCCCCTTCAAAACCAGATTTGCAGTTCTCAGGAACAAAATAATCAAGTTCTCCCACCTTTACAATCCAATGATCAGTTCCAAAATCTCATCCAAGGAGGAGACTTTTCTGCTGACATGGCAAAACATCTGATGCAACAGATAAATGTGGAAGGCTATTCGCCAAACATGAACAACTTGAGCTGCTCCCTTTCCCAAGAAAATATAGTCCCTTCGAATTTAAGCAACGATCATCATCAAACAGCTGTTTCCCAACCAAACTATGTGCCTTGCAGTACTACTTCTAGTAGCCCCAATCCTGATTTTCCGGAAAATTCATATTTCCAATCATTAAACTACAACAAGAACCATGATTTCAGCTTCGATTCTGTTATGTCAACGCCTTATTCAAGCCCGACTCTTTTGAATTCATCAGGCACATACATAAACAGCAGCACAGAGGATGAGAAGGAAAGCTACTGCAGCAGCTGGTTAAAGTTTGAAATCCCAGAGAGTACTTTGGACATTAGTGATATCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009825 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016049 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0040007 GO:0042221 GO:0042335 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080091 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

368

Amino Acids

41.4

Weight (kDa)

5.78

Isoelectric Point (pI)

55.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	1.6e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 75	6.8e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 111	9.8e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 114	1.4e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014777)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g44400 FvH4_6g44400
malus_domestica	MD09G1097700.v1.1 MD17G1086000.v1.1
prunus_persica	Prupe.3G228500_v2.0.a1
pyrus_communis	pycom09g02180 pycom17g08350
rosa_chinensis	RchiOBHm_Chr2g0161391
rosa_multiflora	Rmu_sc0004030.1_g000007 Rmu_sc0010382.1_g000002
rosa_roxburghii	Rroxscaffold_2G00088880
rosa_rugosa	Rorug02G0488700
rosa_samantha	Rh2AG555100 Rh2BG568400 Rh2CG539000 Rh2DG578000
rosa_wichuraiana	Rw2G045930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	889
AciI	CCGC	2 cut(s)	147, 160
AclWI	GGATC	1 cut(s)	359
AcsI	RAATTY	3 cut(s)	799, 895, 988
AfaI	GTAC	3 cut(s)	481, 859, 1078
AfiI	CCNNNNNNNGG	1 cut(s)	355
AgsI	TTSAA	5 cut(s)	475, 593, 972, 988, 1064
AjnI	CCWGG	2 cut(s)	100, 289
AjuI	GAANNNNNNNTTGG	2 cut(s)	644, 676
AluBI	AGCT	7 cut(s)	281, 420, 765, 827, 942, 1038, 1050
AluI	AGCT	7 cut(s)	281, 420, 765, 827, 942, 1038, 1050
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	3 cut(s)	178, 221, 678
AlwI	GGATC	1 cut(s)	359
AlwNI	CAGNNNCTG	2 cut(s)	446, 1050
Aor13HI	TCCGGA	1 cut(s)	889
ApeKI	GCWGC	8 cut(s)	278, 446, 487, 490, 765, 1014, 1044, 1047
ApoI	RAATTY	3 cut(s)	799, 895, 988
AspS9I	GGNCC	2 cut(s)	44, 98
AsuC2I	CCSGG	1 cut(s)	560
AsuII	TTCGAA	1 cut(s)	797
AsuNHI	GCTAGC	1 cut(s)	523
AvaII	GGWCC	2 cut(s)	44, 98
BarI	GAAGNNNNNNTAC	2 cut(s)	1022, 1054
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	8 cut(s)	290, 433, 499, 502, 752, 1026, 1056, 1059
BccI	CCATC	1 cut(s)	162
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BciT130I	CCWGG	2 cut(s)	102, 291
BclI	TGATCA	1 cut(s)	655
BcnI	CCSGG	1 cut(s)	560
BcoDI	GTCTC	3 cut(s)	178, 221, 678
BfaI	CTAG	2 cut(s)	524, 867
BfmI	CTRYAG	2 cut(s)	137, 1042
BisI	GCNGC	9 cut(s)	160, 279, 447, 488, 491, 766, 1015, 1045, 1048
BlsI	GCNGC	9 cut(s)	161, 280, 448, 489, 492, 767, 1016, 1046, 1049
BmcAI	AGTACT	2 cut(s)	859, 1078
Bme1390I	CCNGG	3 cut(s)	102, 291, 560
Bme18I	GGWCC	2 cut(s)	44, 98
BmgT120I	GGNCC	2 cut(s)	44, 98
BmiI	GGNNCC	1 cut(s)	347
BmrFI	CCNGG	3 cut(s)	102, 291, 560
BmsI	GCATC	4 cut(s)	55, 134, 396, 705
BmtI	GCTAGC	1 cut(s)	527
Bpu14I	TTCGAA	1 cut(s)	797
BpuEI	CTTGAG	2 cut(s)	20, 781
BpuMI	CCSGG	1 cut(s)	560
Bsa29I	ATCGAT	3 cut(s)	363, 390, 542
BsaBI	GATNNNNATC	1 cut(s)	816
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	2 cut(s)	47, 676
BsaWI	WCCGGW	1 cut(s)	889
BsaXI	ACNNNNNCTCC	2 cut(s)	364, 394
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse1I	ACTGG	3 cut(s)	326, 368, 440
Bse8I	GATNNNNATC	1 cut(s)	816
BseAI	TCCGGA	1 cut(s)	889
BseBI	CCWGG	2 cut(s)	102, 291
BseCI	ATCGAT	3 cut(s)	363, 390, 542
BseDI	CCNNGG	2 cut(s)	47, 676
BseGI	GGATG	3 cut(s)	333, 672, 1030
BseJI	GATNNNNATC	1 cut(s)	816
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMII	CTCAG	3 cut(s)	173, 430, 626
BseNI	ACTGG	3 cut(s)	326, 368, 440
BseRI	GAGGAG	2 cut(s)	338, 696
BseXI	GCAGC	8 cut(s)	290, 433, 499, 502, 752, 1026, 1056, 1059
BsgI	GTGCAG	1 cut(s)	432
BshVI	ATCGAT	3 cut(s)	363, 390, 542
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	2 cut(s)	560, 890
BslFI	GGGAC	2 cut(s)	555, 776
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmAI	GTCTC	3 cut(s)	178, 221, 678
BsmFI	GGGAC	2 cut(s)	555, 776
BsmI	GAATGC	2 cut(s)	133, 249
Bso31I	GGTCTC	1 cut(s)	178
Bsp119I	TTCGAA	1 cut(s)	797
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp13I	TCCGGA	1 cut(s)	889
Bsp143I	GATC	6 cut(s)	364, 391, 400, 543, 655, 811
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	2 cut(s)	147, 160
BspCNI	CTCAG	3 cut(s)	174, 429, 625
BspDI	ATCGAT	3 cut(s)	363, 390, 542
BspEI	TCCGGA	1 cut(s)	889
BspLI	GGNNCC	1 cut(s)	347
BspMAI	CTGCAG	2 cut(s)	141, 1046
BspOI	GCTAGC	1 cut(s)	527
BspPI	GGATC	1 cut(s)	359
BspT104I	TTCGAA	1 cut(s)	797
BspTNI	GGTCTC	1 cut(s)	178
BsrI	ACTGG	3 cut(s)	326, 368, 440
BssECI	CCNNGG	2 cut(s)	47, 676
BssMI	GATC	6 cut(s)	364, 391, 400, 543, 655, 811
BssT1I	CCWWGG	2 cut(s)	47, 676
Bst2UI	CCWGG	2 cut(s)	102, 291
Bst4CI	ACNGT	1 cut(s)	516
Bst6I	CTCTTC	2 cut(s)	146, 219
BstBI	TTCGAA	1 cut(s)	797
BstC8I	GCNNGC	3 cut(s)	283, 287, 525
BstDEI	CTNAG	4 cut(s)	164, 182, 416, 612
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	3 cut(s)	333, 672, 1030
BstKTI	GATC	6 cut(s)	367, 394, 403, 546, 658, 814
BstMAI	GTCTC	3 cut(s)	178, 221, 678
BstMBI	GATC	6 cut(s)	364, 391, 400, 543, 655, 811
BstMWI	GCNNNNNNNGC	2 cut(s)	701, 1044
BstNI	CCWGG	2 cut(s)	102, 291
BstSCI	CCNGG	3 cut(s)	100, 289, 558
BstSFI	CTRYAG	2 cut(s)	137, 1042
BstV1I	GCAGC	8 cut(s)	290, 433, 499, 502, 752, 1026, 1056, 1059
Bsu15I	ATCGAT	3 cut(s)	363, 390, 542
BsuTUI	ATCGAT	3 cut(s)	363, 390, 542
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	3 cut(s)	333, 672, 1030
BtsIMutI	CAGTG	1 cut(s)	375
Cac8I	GCNNGC	3 cut(s)	283, 287, 525
CaiI	CAGNNNCTG	2 cut(s)	446, 1050
Cfr13I	GGNCC	2 cut(s)	44, 98
ClaI	ATCGAT	3 cut(s)	363, 390, 542
Csp6I	GTAC	3 cut(s)	480, 858, 1077
CviAII	CATG	8 cut(s)	48, 70, 95, 377, 700, 751, 932, 1099
CviQI	GTAC	3 cut(s)	480, 858, 1077
DdeI	CTNAG	4 cut(s)	164, 182, 416, 612
DpnI	GATC	6 cut(s)	366, 393, 402, 545, 657, 813
DpnII	GATC	6 cut(s)	364, 391, 400, 543, 655, 811
Eam1104I	CTCTTC	2 cut(s)	146, 219
EarI	CTCTTC	2 cut(s)	146, 219
Eco130I	CCWWGG	2 cut(s)	47, 676
Eco31I	GGTCTC	1 cut(s)	178
Eco32I	GATATC	1 cut(s)	1096
Eco47I	GGWCC	2 cut(s)	44, 98
EcoRI	GAATTC	1 cut(s)	988
EcoRII	CCWGG	2 cut(s)	100, 289
EcoRV	GATATC	1 cut(s)	1096
EcoT14I	CCWWGG	2 cut(s)	47, 676
ErhI	CCWWGG	2 cut(s)	47, 676
FaeI	CATG	8 cut(s)	51, 73, 98, 380, 703, 754, 935, 1102
FaqI	GGGAC	2 cut(s)	555, 776
FatI	CATG	8 cut(s)	47, 69, 94, 376, 699, 750, 931, 1098
FauI	CCCGC	1 cut(s)	140
FauNDI	CATATG	1 cut(s)	424
FbaI	TGATCA	1 cut(s)	655
Fnu4HI	GCNGC	9 cut(s)	160, 279, 447, 488, 491, 766, 1015, 1045, 1048
FokI	GGATG	3 cut(s)	320, 659, 1037
Fsp4HI	GCNGC	9 cut(s)	160, 279, 447, 488, 491, 766, 1015, 1045, 1048
FspBI	CTAG	2 cut(s)	524, 867
GluI	GCNGC	9 cut(s)	160, 279, 447, 488, 491, 766, 1015, 1045, 1048
HapII	CCGG	2 cut(s)	560, 890
Hin1II	CATG	8 cut(s)	51, 73, 98, 380, 703, 754, 935, 1102
HincII	GTYRAC	1 cut(s)	960
HindII	GTYRAC	1 cut(s)	960
HinfI	GANTC	5 cut(s)	33, 360, 373, 947, 979
HpaII	CCGG	2 cut(s)	560, 890
Hpy166II	GTNNAC	2 cut(s)	482, 960
Hpy188I	TCNGA	4 cut(s)	90, 338, 353, 714
Hpy188III	TCNNGA	7 cut(s)	37, 313, 398, 509, 614, 881, 890
Hpy8I	GTNNAC	2 cut(s)	482, 960
HpyAV	CCTTC	7 cut(s)	128, 198, 288, 599, 728, 804, 1024
HpyCH4III	ACNGT	1 cut(s)	516
HpyCH4V	TGCA	9 cut(s)	131, 139, 278, 432, 449, 606, 718, 855, 1044
HpyF10VI	GCNNNNNNNGC	2 cut(s)	701, 1044
HpyF3I	CTNAG	4 cut(s)	164, 182, 416, 612
Hsp92II	CATG	8 cut(s)	51, 73, 98, 380, 703, 754, 935, 1102
Kpn2I	TCCGGA	1 cut(s)	889
Ksp22I	TGATCA	1 cut(s)	655
Kzo9I	GATC	6 cut(s)	364, 391, 400, 543, 655, 811
LmnI	GCTCC	3 cut(s)	351, 385, 773
Lsp1109I	GCAGC	8 cut(s)	290, 433, 499, 502, 752, 1026, 1056, 1059
LweI	GCATC	4 cut(s)	55, 134, 396, 705
MaeI	CTAG	2 cut(s)	524, 867
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	6 cut(s)	366, 393, 402, 545, 657, 813
MboI	GATC	6 cut(s)	364, 391, 400, 543, 655, 811
MboII	GAAGA	6 cut(s)	71, 74, 163, 233, 236, 386
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	9 cut(s)	79, 106, 411, 457, 563, 577, 799, 895, 988
MlyI	GAGTC	3 cut(s)	27, 367, 973
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	7 cut(s)	194, 211, 359, 418, 513, 674, 1015
MroI	TCCGGA	1 cut(s)	889
MseI	TTAA	4 cut(s)	504, 803, 914, 1055
MslI	CAYNNNNRTG	1 cut(s)	427
MspA1I	CMGCKG	2 cut(s)	827, 1050
MspI	CCGG	2 cut(s)	560, 890
MspR9I	CCNGG	3 cut(s)	102, 291, 560
Mva1269I	GAATGC	2 cut(s)	133, 249
MvaI	CCWGG	2 cut(s)	102, 291
MwoI	GCNNNNNNNGC	2 cut(s)	701, 1044
NciI	CCSGG	1 cut(s)	560
NcoI	CCATGG	1 cut(s)	47
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	6 cut(s)	364, 391, 400, 543, 655, 811
NheI	GCTAGC	1 cut(s)	523
NlaIII	CATG	8 cut(s)	51, 73, 98, 380, 703, 754, 935, 1102
NlaIV	GGNNCC	1 cut(s)	347
NmuCI	GTSAC	1 cut(s)	370
NspV	TTCGAA	1 cut(s)	797
PctI	GAATGC	2 cut(s)	133, 249
PfeI	GAWTC	2 cut(s)	360, 947
PkrI	GCNGC	9 cut(s)	161, 280, 448, 489, 492, 767, 1016, 1046, 1049
PleI	GAGTC	3 cut(s)	27, 367, 973
PpsI	GAGTC	3 cut(s)	27, 367, 973
Psp6I	CCWGG	2 cut(s)	100, 289
PspGI	CCWGG	2 cut(s)	100, 289
PspN4I	GGNNCC	1 cut(s)	347
PspPI	GGNCC	2 cut(s)	44, 98
PstI	CTGCAG	2 cut(s)	141, 1046
PstNI	CAGNNNCTG	2 cut(s)	446, 1050
PvuII	CAGCTG	2 cut(s)	827, 1050
RsaI	GTAC	3 cut(s)	481, 859, 1078
RsaNI	GTAC	3 cut(s)	480, 858, 1077
RseI	CAYNNNNRTG	1 cut(s)	427
SaqAI	TTAA	4 cut(s)	504, 803, 914, 1055
SatI	GCNGC	9 cut(s)	160, 279, 447, 488, 491, 766, 1015, 1045, 1048
Sau3AI	GATC	6 cut(s)	364, 391, 400, 543, 655, 811
Sau96I	GGNCC	2 cut(s)	44, 98
ScaI	AGTACT	2 cut(s)	859, 1078
SchI	GAGTC	3 cut(s)	27, 367, 973
ScrFI	CCNGG	3 cut(s)	102, 291, 560
SduI	GDGCHC	1 cut(s)	13
SfaNI	GCATC	4 cut(s)	55, 134, 396, 705
SfcI	CTRYAG	2 cut(s)	137, 1042
SfuI	TTCGAA	1 cut(s)	797
SinI	GGWCC	2 cut(s)	44, 98
SmiMI	CAYNNNNRTG	1 cut(s)	427
SmlI	CTYRAG	2 cut(s)	35, 760
SmoI	CTYRAG	2 cut(s)	35, 760
Sse9I	AATT	9 cut(s)	79, 106, 411, 457, 563, 577, 799, 895, 988
SsiI	CCGC	2 cut(s)	147, 160
SspMI	CTAG	2 cut(s)	524, 867
StyD4I	CCNGG	3 cut(s)	100, 289, 558
StyI	CCWWGG	2 cut(s)	47, 676
TaaI	ACNGT	1 cut(s)	516
TaqI	TCGA	6 cut(s)	363, 390, 464, 542, 797, 945
TasI	AATT	9 cut(s)	79, 106, 411, 457, 563, 577, 799, 895, 988
TatI	WGTACW	3 cut(s)	479, 857, 1076
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	2 cut(s)	360, 947
Tru1I	TTAA	4 cut(s)	504, 803, 914, 1055
Tru9I	TTAA	4 cut(s)	504, 803, 914, 1055
TscAI	CASTG	1 cut(s)	375
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	8 cut(s)	278, 446, 487, 490, 765, 1014, 1044, 1047
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	4 cut(s)	321, 767, 888, 981
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	1 cut(s)	375
VpaK11BI	GGWCC	2 cut(s)	44, 98
XapI	RAATTY	3 cut(s)	799, 895, 988
XspI	CTAG	2 cut(s)	524, 867
ZrmI	AGTACT	2 cut(s)	859, 1078

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.