FvH4_6g45150

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014406
Physical Location & Seq
Reverse (-)
34665613 .. 34667213
1601 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g45150.t1

Sequence Viewer

Length: 906 bp
ATGCGGATGAGCTGTAATGGATGCCGTATACTACGCAAGGGGTGCAGCGAGAATTGTAGCATCAGACCATGTTTGCAGTGGATTAAGAGCCCCGAATCTCAAGCAAACGCTACCGTTTTTCTCGCCAAGTTTTACGGCCGCGCTGGGCTCATGAACCTCATCAACGCCGGACCCGAAAACCTCCGACCTGCGATTTTCCGATCACTGCTCTACGAGGCATGCGGGAGGATTGTGAACCCGATTTACGGGTCGGTTGGGTTGTTGTGGTCCGGGTCATGGCAACTATGCCAAGCCGCCGTGGAGAACGTGCTGAAAGGCCAGCCGATTACTCCGATCACCTCGGAGGCCGCGGCCAACGGGCATGGCCCACCTCTCAAGGCGTACGACATTCGCCACGTGTCCAAGGACGAGAACTCCGCCGCGTCCACCGACCCCCAGAAGGCAAAGACGCGCTACCGGTTCAAGAGGTCCGCCGTGAAACCCAAGCCCAACAAGACCGGGTCGGGATCCGGAGTCGAGGACGCGGCGGCGGCTCGCTTTGAAGCCAAGCCGTACTGGGTCGGCGACGAGTTCAACCGGTCGACGAGTCACGACTCGTCGCTGAGTCATCAGTCCGAGGCTGCCAACGTAGACGGCGACAGCAAGGAAACCGAGAGCATGGTTTCGTCGGAGACGGCGGAGGCTTCGCTCTTGTTCCGAGCCGAGCCGGAGTCGTCGCCTCGCAAGCGAACCGCCCCGGTTCAGGAAAGCGAGTTGGCTCTGGAGCTGACTCTTGGACTCGAATCGTCGTCATCACGTGCACCGCACGTGGTTCCGGTCAAGAAGAGAAGGGTAGAAGCGTCAGGATTCTGCGGTGGCTCGTCGTCGGGCGACGGCGCGTGTAAAATGGAGCTGGGCCTTGCTTGA

Protein Analysis

302

Amino Acids

32.34

Weight (kDa)

8.81

Isoelectric Point (pI)

54.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 4 - 102 2e-23 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02550
fragaria_vesca FvH4_6g45150
malus_domestica MD09G1088700.v1.1 MD17G1078600.v1.1
prunus_persica Prupe.3G236200_v2.0.a1
pyrus_communis pycom09g01450 pycom17g07790
rosa_chinensis RchiOBHm_Chr2g0162621
rosa_laevigata RLG00000021353
rosa_multiflora Rmu_ssc0000364.1_g000001
rosa_roxburghii Rroxscaffold_2G00087820
rosa_rugosa Rorug02G0498400
rosa_samantha Rh2AG564500 Rh2BG577400 Rh2CG547100 Rh2DG587000
rosa_wichuraiana Rw2G046700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 196
AccI GTMKAC 3 cut(s) 28, 581, 630
AccII CGCG 6 cut(s) 141, 350, 422, 451, 524, 878
AccIII TCCGGA 1 cut(s) 509
AclWI GGATC 2 cut(s) 501, 514
AcoI YGGCCR 2 cut(s) 136, 351
AcvI CACGTG 3 cut(s) 397, 797, 808
AfaI GTAC 2 cut(s) 383, 554
AfiI CCNNNNNNNGG 4 cut(s) 245, 276, 439, 742
AflIII ACRYGT 1 cut(s) 396
AgeI ACCGGT 2 cut(s) 456, 576
AgsI TTSAA 3 cut(s) 463, 542, 574
AluBI AGCT 3 cut(s) 12, 766, 892
AluI AGCT 3 cut(s) 12, 766, 892
Alw21I GWGCWC 1 cut(s) 802
Alw26I GTCTC 1 cut(s) 665
Alw44I GTGCAC 1 cut(s) 798
AlwI GGATC 2 cut(s) 501, 514
Aor13HI TCCGGA 1 cut(s) 509
AoxI GGCC 6 cut(s) 136, 316, 345, 351, 364, 895
ApaLI GTGCAC 1 cut(s) 798
ApeKI GCWGC 2 cut(s) 45, 620
AsiGI ACCGGT 2 cut(s) 456, 576
AspLEI GCGC 3 cut(s) 143, 453, 878
AspS9I GGNCC 5 cut(s) 170, 267, 365, 468, 895
AsuC2I CCSGG 3 cut(s) 271, 499, 737
AsuHPI GGTGA 1 cut(s) 328
AvaII GGWCC 3 cut(s) 170, 267, 468
BaeGI GKGCMC 1 cut(s) 802
BamHI GGATCC 1 cut(s) 506
BanII GRGCYC 2 cut(s) 92, 150
BbrPI CACGTG 3 cut(s) 397, 797, 808
Bbv12I GWGCWC 1 cut(s) 802
BbvI GCAGC 2 cut(s) 57, 607
BceAI ACGGC 8 cut(s) 9, 151, 281, 458, 535, 649, 690, 889
BcnI CCSGG 3 cut(s) 271, 499, 737
BcoDI GTCTC 1 cut(s) 665
BfuAI ACCTGC 1 cut(s) 196
Bme1390I CCNGG 3 cut(s) 271, 499, 737
Bme18I GGWCC 3 cut(s) 170, 267, 468
BmgT120I GGNCC 5 cut(s) 170, 267, 365, 468, 895
BmiI GGNNCC 3 cut(s) 172, 508, 813
BmrFI CCNGG 3 cut(s) 271, 499, 737
BmrI ACTGGG 1 cut(s) 565
BmsI GCATC 2 cut(s) 11, 69
BmuI ACTGGG 1 cut(s) 565
BpmI CTGGAG 1 cut(s) 782
BpuEI CTTGAG 2 cut(s) 84, 359
BpuMI CCSGG 3 cut(s) 271, 499, 737
BsaAI YACGTR 3 cut(s) 397, 797, 808
BsaJI CCNNGG 6 cut(s) 297, 339, 348, 402, 615, 735
BsaWI WCCGGW 4 cut(s) 456, 509, 576, 814
BsaXI ACNNNNNCTCC 2 cut(s) 398, 428
Bsc4I CCNNNNNNNGG 4 cut(s) 245, 276, 439, 742
Bse118I RCCGGY 2 cut(s) 456, 576
Bse1I ACTGG 1 cut(s) 560
BseAI TCCGGA 1 cut(s) 509
BseDI CCNNGG 6 cut(s) 297, 339, 348, 402, 615, 735
BseGI GGATG 2 cut(s) 12, 26
BseLI CCNNNNNNNGG 4 cut(s) 245, 276, 439, 742
BseMII CTCAG 1 cut(s) 593
BseNI ACTGG 1 cut(s) 560
BseSI GKGCMC 1 cut(s) 802
BseX3I CGGCCG 1 cut(s) 136
BseXI GCAGC 2 cut(s) 57, 607
BseYI CCCAGC 2 cut(s) 143, 892
BsgI GTGCAG 1 cut(s) 64
Bsh1236I CGCG 6 cut(s) 141, 350, 422, 451, 524, 878
Bsh1285I CGRYCG 2 cut(s) 139, 581
BshFI GGCC 6 cut(s) 138, 318, 347, 353, 366, 897
BshTI ACCGGT 2 cut(s) 456, 576
BsiEI CGRYCG 2 cut(s) 139, 581
BsiHKAI GWGCWC 1 cut(s) 802
BsiSI CCGG 9 cut(s) 168, 270, 457, 498, 510, 577, 707, 737, 815
BsiWI CGTACG 1 cut(s) 381
BslI CCNNNNNNNGG 4 cut(s) 245, 276, 439, 742
BsmAI GTCTC 1 cut(s) 665
BsmBI CGTCTC 1 cut(s) 665
BsnI GGCC 6 cut(s) 138, 318, 347, 353, 366, 897
Bsp1286I GDGCHC 3 cut(s) 92, 150, 802
Bsp13I TCCGGA 1 cut(s) 509
Bsp143I GATC 3 cut(s) 200, 333, 506
BspANI GGCC 6 cut(s) 138, 318, 347, 353, 366, 897
BspCNI CTCAG 1 cut(s) 594
BspEI TCCGGA 1 cut(s) 509
BspFNI CGCG 6 cut(s) 141, 350, 422, 451, 524, 878
BspHI TCATGA 1 cut(s) 150
BspLI GGNNCC 3 cut(s) 172, 508, 813
BspMI ACCTGC 1 cut(s) 196
BspPI GGATC 2 cut(s) 501, 514
BsrFI RCCGGY 2 cut(s) 456, 576
BsrI ACTGG 1 cut(s) 560
BssAI RCCGGY 2 cut(s) 456, 576
BssECI CCNNGG 6 cut(s) 297, 339, 348, 402, 615, 735
BssMI GATC 3 cut(s) 200, 333, 506
BssNAI GTATAC 1 cut(s) 29
BssT1I CCWWGG 1 cut(s) 402
Bst1107I GTATAC 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 115
Bst6I CTCTTC 1 cut(s) 818
BstAPI GCANNNNNTGC 1 cut(s) 42
BstBAI YACGTR 3 cut(s) 397, 797, 808
BstC8I GCNNGC 4 cut(s) 220, 320, 535, 725
BstDEI CTNAG 1 cut(s) 602
BstDSI CCRYGG 2 cut(s) 297, 348
BstF5I GGATG 2 cut(s) 12, 26
BstFNI CGCG 6 cut(s) 141, 350, 422, 451, 524, 878
BstHHI GCGC 3 cut(s) 143, 453, 878
BstKTI GATC 3 cut(s) 203, 336, 509
BstMAI GTCTC 1 cut(s) 665
BstMBI GATC 3 cut(s) 200, 333, 506
BstMCI CGRYCG 2 cut(s) 139, 581
BstMWI GCNNNNNNNGC 3 cut(s) 42, 530, 724
BstNSI RCATGY 1 cut(s) 222
BstSCI CCNGG 3 cut(s) 269, 497, 735
BstSLI GKGCMC 1 cut(s) 802
BstUI CGCG 6 cut(s) 141, 350, 422, 451, 524, 878
BstV1I GCAGC 2 cut(s) 57, 607
BstX2I RGATCY 1 cut(s) 506
BstYI RGATCY 1 cut(s) 506
BstZ17I GTATAC 1 cut(s) 29
BstZI CGGCCG 1 cut(s) 136
BsuRI GGCC 6 cut(s) 138, 318, 347, 353, 366, 897
BtgI CCRYGG 2 cut(s) 297, 348
BtsCI GGATG 2 cut(s) 12, 26
BtsI GCAGTG 2 cut(s) 83, 203
BtsIMutI CAGTG 2 cut(s) 83, 203
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 4 cut(s) 220, 320, 535, 725
CciI TCATGA 1 cut(s) 150
CfoI GCGC 3 cut(s) 143, 453, 878
Cfr10I RCCGGY 2 cut(s) 456, 576
Cfr13I GGNCC 5 cut(s) 170, 267, 365, 468, 895
Cfr42I CCGCGG 1 cut(s) 351
CseI GACGC 4 cut(s) 411, 457, 530, 828
Csp6I GTAC 2 cut(s) 382, 553
CspAI ACCGGT 2 cut(s) 456, 576
CviAII CATG 6 cut(s) 69, 151, 219, 276, 362, 658
CviQI GTAC 2 cut(s) 382, 553
DdeI CTNAG 1 cut(s) 602
DpnI GATC 3 cut(s) 202, 335, 508
DpnII GATC 3 cut(s) 200, 333, 506
EaeI YGGCCR 2 cut(s) 136, 351
EagI CGGCCG 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 818
EarI CTCTTC 1 cut(s) 818
EciI GGCGGA 3 cut(s) 406, 460, 692
EclXI CGGCCG 1 cut(s) 136
Eco130I CCWWGG 1 cut(s) 402
Eco24I GRGCYC 2 cut(s) 92, 150
Eco47I GGWCC 3 cut(s) 170, 267, 468
Eco52I CGGCCG 1 cut(s) 136
Eco72I CACGTG 3 cut(s) 397, 797, 808
EcoT14I CCWWGG 1 cut(s) 402
EcoT38I GRGCYC 2 cut(s) 92, 150
ErhI CCWWGG 1 cut(s) 402
Esp3I CGTCTC 1 cut(s) 665
FaeI CATG 6 cut(s) 72, 154, 222, 279, 365, 661
FaiI YATR 8 cut(s) 29, 70, 152, 220, 277, 286, 363, 659
FatI CATG 6 cut(s) 68, 150, 218, 275, 361, 657
FauI CCCGC 1 cut(s) 215
FblI GTMKAC 3 cut(s) 28, 581, 630
FokI GGATG 2 cut(s) 19, 33
FriOI GRGCYC 2 cut(s) 92, 150
GlaI GCGC 3 cut(s) 142, 452, 877
GsaI CCCAGC 2 cut(s) 147, 896
GsuI CTGGAG 1 cut(s) 782
HaeIII GGCC 6 cut(s) 138, 318, 347, 353, 366, 897
HapII CCGG 9 cut(s) 168, 270, 457, 498, 510, 577, 707, 737, 815
HgaI GACGC 4 cut(s) 411, 457, 530, 828
HhaI GCGC 3 cut(s) 143, 453, 878
Hin1II CATG 6 cut(s) 72, 154, 222, 279, 365, 661
Hin6I GCGC 3 cut(s) 141, 451, 876
HinP1I GCGC 3 cut(s) 141, 451, 876
HincII GTYRAC 1 cut(s) 582
HindII GTYRAC 1 cut(s) 582
HpaII CCGG 9 cut(s) 168, 270, 457, 498, 510, 577, 707, 737, 815
HphI GGTGA 1 cut(s) 328
Hpy166II GTNNAC 6 cut(s) 29, 235, 426, 582, 631, 800
Hpy188I TCNGA 8 cut(s) 65, 185, 200, 333, 343, 616, 670, 698
Hpy188III TCNNGA 9 cut(s) 151, 463, 504, 510, 590, 743, 761, 820, 843
Hpy8I GTNNAC 6 cut(s) 29, 235, 426, 582, 631, 800
Hpy99I CGWCG 9 cut(s) 569, 586, 601, 670, 718, 790, 865, 868, 875
HpyAV CCTTC 2 cut(s) 433, 822
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4IV ACGT 5 cut(s) 306, 396, 627, 796, 807
HpyCH4V TGCA 3 cut(s) 45, 76, 800
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 530, 724
HpyF3I CTNAG 1 cut(s) 602
HpySE526I ACGT 5 cut(s) 306, 396, 627, 796, 807
Hsp92II CATG 6 cut(s) 72, 154, 222, 279, 365, 661
HspAI GCGC 3 cut(s) 141, 451, 876
Kpn2I TCCGGA 1 cut(s) 509
KspI CCGCGG 1 cut(s) 351
Kzo9I GATC 3 cut(s) 200, 333, 506
LmnI GCTCC 2 cut(s) 763, 889
Lsp1109I GCAGC 2 cut(s) 57, 607
LweI GCATC 2 cut(s) 11, 69
MaeII ACGT 5 cut(s) 306, 396, 627, 796, 807
MaeIII GTNAC 1 cut(s) 587
MalI GATC 3 cut(s) 202, 335, 508
MboI GATC 3 cut(s) 200, 333, 506
MboII GAAGA 1 cut(s) 835
MflI RGATCY 1 cut(s) 506
MhlI GDGCHC 3 cut(s) 92, 150, 802
MluCI AATT 1 cut(s) 52
MlyI GAGTC 7 cut(s) 522, 587, 595, 613, 719, 763, 771
MmeI TCCRAC 2 cut(s) 208, 648
MroI TCCGGA 1 cut(s) 509
MseI TTAA 1 cut(s) 84
MspA1I CMGCKG 1 cut(s) 350
MspI CCGG 9 cut(s) 168, 270, 457, 498, 510, 577, 707, 737, 815
MspR9I CCNGG 3 cut(s) 271, 499, 737
MvnI CGCG 6 cut(s) 141, 350, 422, 451, 524, 878
MwoI GCNNNNNNNGC 3 cut(s) 42, 530, 724
NciI CCSGG 3 cut(s) 271, 499, 737
NdeII GATC 3 cut(s) 200, 333, 506
NlaIII CATG 6 cut(s) 72, 154, 222, 279, 365, 661
NlaIV GGNNCC 3 cut(s) 172, 508, 813
NmeAIII GCCGAG 1 cut(s) 727
NmuCI GTSAC 1 cut(s) 587
NspI RCATGY 1 cut(s) 222
PaeI GCATGC 1 cut(s) 222
PagI TCATGA 1 cut(s) 150
PcsI WCGNNNNNNNCGW 2 cut(s) 171, 633
PfeI GAWTC 3 cut(s) 95, 782, 846
Pfl23II CGTACG 1 cut(s) 381
PflFI GACNNNGTC 1 cut(s) 499
PinAI ACCGGT 2 cut(s) 456, 576
PleI GAGTC 7 cut(s) 521, 587, 594, 612, 718, 763, 771
PmaCI CACGTG 3 cut(s) 397, 797, 808
PmlI CACGTG 3 cut(s) 397, 797, 808
PpsI GAGTC 7 cut(s) 521, 587, 594, 612, 718, 763, 771
Ppu21I YACGTR 3 cut(s) 397, 797, 808
PspCI CACGTG 3 cut(s) 397, 797, 808
PspFI CCCAGC 2 cut(s) 143, 892
PspLI CGTACG 1 cut(s) 381
PspN4I GGNNCC 3 cut(s) 172, 508, 813
PspPI GGNCC 5 cut(s) 170, 267, 365, 468, 895
PsrI GAACNNNNNNTAC 2 cut(s) 227, 259
PsuI RGATCY 1 cut(s) 506
PsyI GACNNNGTC 1 cut(s) 499
RsaI GTAC 2 cut(s) 383, 554
RsaNI GTAC 2 cut(s) 382, 553
SacII CCGCGG 1 cut(s) 351
SalI GTCGAC 1 cut(s) 580
SaqAI TTAA 1 cut(s) 84
Sau3AI GATC 3 cut(s) 200, 333, 506
Sau96I GGNCC 5 cut(s) 170, 267, 365, 468, 895
SchI GAGTC 7 cut(s) 522, 587, 595, 613, 719, 763, 771
ScrFI CCNGG 3 cut(s) 271, 499, 737
SduI GDGCHC 3 cut(s) 92, 150, 802
SfaNI GCATC 2 cut(s) 11, 69
Sfr303I CCGCGG 1 cut(s) 351
SgrBI CCGCGG 1 cut(s) 351
SinI GGWCC 3 cut(s) 170, 267, 468
SmlI CTYRAG 2 cut(s) 99, 374
SmoI CTYRAG 2 cut(s) 99, 374
SphI GCATGC 1 cut(s) 222
Sse9I AATT 1 cut(s) 52
StyD4I CCNGG 3 cut(s) 269, 497, 735
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 1 cut(s) 115
TaiI ACGT 5 cut(s) 309, 399, 630, 799, 810
TaqI TCGA 3 cut(s) 516, 581, 780
TasI AATT 1 cut(s) 52
TauI GCSGC 8 cut(s) 141, 296, 350, 353, 422, 527, 530, 533
TfiI GAWTC 3 cut(s) 95, 782, 846
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 2 cut(s) 83, 210
TseFI GTSAC 1 cut(s) 587
TseI GCWGC 2 cut(s) 45, 620
Tsp45I GTSAC 1 cut(s) 587
TspDTI ATGAA 1 cut(s) 167
TspRI CASTG 2 cut(s) 83, 210
Tth111I GACNNNGTC 1 cut(s) 499
VneI GTGCAC 1 cut(s) 798
VpaK11BI GGWCC 3 cut(s) 170, 267, 468
XceI RCATGY 1 cut(s) 222
XcmI CCANNNNNNNNNTGG 1 cut(s) 75
XmiI GTMKAC 3 cut(s) 28, 581, 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.