Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0014406

Physical Location & Seq

Genomic Coordinates Reverse (-)

23105567 .. 23107562

Gene Structure 1996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G236200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGCGGATGAGTTGTAATGGATGCCGAATACTCCGCAAAGGCTGCAGCGAGAATTGCAGCATCAGGCCTTGCTTGCAGTGGATTAAGAGCCCTGAGTCCCAAGCAAACGCCACCGTTTTCCTCGCCAAGTTCTACGGCCGCGCCGGCCTCATGAACCTCATCAACGCCGGCCCCGAACACCTCCGTCCTGCAATCTTTCGATCATTGCTATACGAGGCATGCGGGCGGATTGTGAACCCCATTTACGGGTCGGTTGGGTTGCTGTGGTCCGGAAGTTGGCAGCTCTGCCAAGCCGCCGTAGAAGCCGTGCTGAAGGGCCAGCCGATCACTTCGATTACATCTGAAGCTGCTGCTGATGGACATGGCCCACCTCTCAAGGCCTACGACATTCGCCACGTGTCCAAGGACGAGAACTCGGCCGCGTCGAACGAGCCGAAGCAGGCTAAGACTCGGTACCGGTTCAAGAGGTCCGTCGTCAAGCCCAAGGCCAGCAAGGTCGGGTCTGGGTCGGGCTCCGGAGCCGACGACTCGGCCAAACCGAGCTGCGCGGGGTGCTGTGCGGACGAGTTCAACCGGTCGACGAGTCACGAGTCGTCGCTGAGTCACCAGTCCGAGGCGGCTGCCAACGTGGACGGAGAAAGCAAGGAAACGGAGAGCATGGTTTCGTCCGAAACGGCTGAGGCTGAGCTGTTATTTCGACCGGAGCCGGAGTCGGCTCGCAAGCGGAGTGAGCCAGTTCAGGAAGGAGAGTTGGCTCTGGAGCTAACGCTGGGGCTGGAACCGCAGTCACGTGCGCACCACGTCGTTCCGGTGAAGAAGAGGAGGATCGATGCTTATGGGTTAGGCGGTAGGTCCTCAGCTGACGACGGCGCGTGTAAAATGGAACTGGGGCTTGATTTAGTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

303

Amino Acids

32.41

Weight (kDa)

7.97

Isoelectric Point (pI)

55.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02550
fragaria_vesca	FvH4_6g45150
malus_domestica	MD09G1088700.v1.1 MD17G1078600.v1.1
prunus_persica	Prupe.3G236200_v2.0.a1
pyrus_communis	pycom09g01450 pycom17g07790
rosa_chinensis	RchiOBHm_Chr2g0162621
rosa_laevigata	RLG00000021353
rosa_multiflora	Rmu_ssc0000364.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087820
rosa_rugosa	Rorug02G0498400
rosa_samantha	Rh2AG564500 Rh2BG577400 Rh2CG547100 Rh2DG587000
rosa_wichuraiana	Rw2G046700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	795
Acc65I	GGTACC	1 cut(s)	453
AccB1I	GGYRCC	1 cut(s)	453
AccI	GTMKAC	1 cut(s)	578
AccII	CGCG	4 cut(s)	141, 422, 548, 872
AccIII	TCCGGA	2 cut(s)	269, 515
AclWI	GGATC	1 cut(s)	833
AcoI	YGGCCR	3 cut(s)	136, 417, 531
AcuI	CTGAAG	2 cut(s)	332, 363
AcvI	CACGTG	2 cut(s)	397, 791
AfaI	GTAC	1 cut(s)	455
AfiI	CCNNNNNNNGG	4 cut(s)	245, 246, 276, 613
AflIII	ACRYGT	1 cut(s)	396
AgeI	ACCGGT	2 cut(s)	456, 573
AgsI	TTSAA	2 cut(s)	463, 571
AjiI	CACGTC	1 cut(s)	802
AluBI	AGCT	6 cut(s)	283, 347, 543, 688, 763, 860
AluI	AGCT	6 cut(s)	283, 347, 543, 688, 763, 860
AlwI	GGATC	1 cut(s)	833
Aor13HI	TCCGGA	2 cut(s)	269, 515
ApeKI	GCWGC	8 cut(s)	42, 45, 57, 280, 347, 350, 543, 620
AsiGI	ACCGGT	2 cut(s)	456, 573
Asp718I	GGTACC	1 cut(s)	453
AspLEI	GCGC	4 cut(s)	143, 548, 796, 872
AspS9I	GGNCC	6 cut(s)	170, 267, 316, 365, 468, 852
AsuHPI	GGTGA	2 cut(s)	596, 823
AvaII	GGWCC	3 cut(s)	267, 468, 852
BanI	GGYRCC	1 cut(s)	453
BanII	GRGCYC	2 cut(s)	92, 515
BauI	CACGAG	1 cut(s)	587
BbrPI	CACGTG	2 cut(s)	397, 791
BbvCI	CCTCAGC	2 cut(s)	678, 856
BbvI	GCAGC	8 cut(s)	29, 57, 69, 292, 334, 337, 530, 607
BccI	CCATC	1 cut(s)	350
BceAI	ACGGC	5 cut(s)	151, 281, 290, 690, 883
BcgI	CGANNNNNNTGC	2 cut(s)	602, 636
BfmI	CTRYAG	1 cut(s)	43
BglI	GCCNNNNNGGC	1 cut(s)	144
BlpI	GCTNAGC	1 cut(s)	684
Bme18I	GGWCC	3 cut(s)	267, 468, 852
BmgBI	CACGTC	1 cut(s)	802
BmgT120I	GGNCC	6 cut(s)	170, 267, 316, 365, 468, 852
BmiI	GGNNCC	6 cut(s)	172, 455, 514, 520, 705, 780
BmrI	ACTGGG	1 cut(s)	896
BmsI	GCATC	3 cut(s)	11, 69, 820
BmuI	ACTGGG	1 cut(s)	896
BpmI	CTGGAG	1 cut(s)	779
Bpu10I	CCTNAGC	2 cut(s)	678, 856
Bpu1102I	GCTNAGC	1 cut(s)	684
BpuEI	CTTGAG	1 cut(s)	359
Bsa29I	ATCGAT	1 cut(s)	828
BsaAI	YACGTR	2 cut(s)	397, 791
BsaJI	CCNNGG	3 cut(s)	402, 483, 612
BsaWI	WCCGGW	6 cut(s)	269, 456, 515, 573, 700, 808
BsaXI	ACNNNNNCTCC	2 cut(s)	695, 725
Bsc4I	CCNNNNNNNGG	4 cut(s)	245, 246, 276, 613
Bse118I	RCCGGY	4 cut(s)	143, 167, 456, 573
Bse1I	ACTGG	3 cut(s)	607, 734, 891
Bse3DI	GCAATG	1 cut(s)	203
BseAI	TCCGGA	2 cut(s)	269, 515
BseCI	ATCGAT	1 cut(s)	828
BseDI	CCNNGG	3 cut(s)	402, 483, 612
BseGI	GGATG	2 cut(s)	12, 26
BseLI	CCNNNNNNNGG	4 cut(s)	245, 246, 276, 613
BseMI	GCAATG	1 cut(s)	203
BseMII	CTCAG	5 cut(s)	84, 590, 669, 675, 870
BseNI	ACTGG	3 cut(s)	607, 734, 891
BseRI	GAGGAG	1 cut(s)	835
BseX3I	CGGCCG	2 cut(s)	136, 417
BseXI	GCAGC	8 cut(s)	29, 57, 69, 292, 334, 337, 530, 607
BseYI	CCCAGC	1 cut(s)	769
Bsh1236I	CGCG	4 cut(s)	141, 422, 548, 872
Bsh1285I	CGRYCG	4 cut(s)	139, 420, 578, 701
BshNI	GGYRCC	1 cut(s)	453
BshTI	ACCGGT	2 cut(s)	456, 573
BshVI	ATCGAT	1 cut(s)	828
BsiEI	CGRYCG	4 cut(s)	139, 420, 578, 701
BsiSI	CCGG	9 cut(s)	144, 168, 270, 457, 516, 574, 701, 707, 809
BslFI	GGGAC	1 cut(s)	82
BslI	CCNNNNNNNGG	4 cut(s)	245, 246, 276, 613
BsmFI	GGGAC	1 cut(s)	82
Bsp1286I	GDGCHC	2 cut(s)	92, 515
Bsp13I	TCCGGA	2 cut(s)	269, 515
Bsp143I	GATC	3 cut(s)	200, 324, 825
Bsp1720I	GCTNAGC	1 cut(s)	684
BspCNI	CTCAG	5 cut(s)	85, 591, 670, 676, 869
BspDI	ATCGAT	1 cut(s)	828
BspEI	TCCGGA	2 cut(s)	269, 515
BspFNI	CGCG	4 cut(s)	141, 422, 548, 872
BspHI	TCATGA	1 cut(s)	150
BspLI	GGNNCC	6 cut(s)	172, 455, 514, 520, 705, 780
BspMAI	CTGCAG	1 cut(s)	47
BspPI	GGATC	1 cut(s)	833
BspT107I	GGYRCC	1 cut(s)	453
BsrDI	GCAATG	1 cut(s)	203
BsrFI	RCCGGY	4 cut(s)	143, 167, 456, 573
BsrI	ACTGG	3 cut(s)	607, 734, 891
BssAI	RCCGGY	4 cut(s)	143, 167, 456, 573
BssECI	CCNNGG	3 cut(s)	402, 483, 612
BssMI	GATC	3 cut(s)	200, 324, 825
BssSI	CACGAG	1 cut(s)	587
BssT1I	CCWWGG	2 cut(s)	402, 483
Bst2BI	CACGAG	1 cut(s)	587
Bst4CI	ACNGT	1 cut(s)	115
Bst6I	CTCTTC	1 cut(s)	812
BstAPI	GCANNNNNTGC	1 cut(s)	42
BstBAI	YACGTR	2 cut(s)	397, 791
BstDEI	CTNAG	6 cut(s)	93, 444, 599, 678, 684, 856
BstF5I	GGATG	2 cut(s)	12, 26
BstFNI	CGCG	4 cut(s)	141, 422, 548, 872
BstHHI	GCGC	4 cut(s)	143, 548, 796, 872
BstKTI	GATC	3 cut(s)	203, 327, 828
BstMBI	GATC	3 cut(s)	200, 324, 825
BstMCI	CGRYCG	4 cut(s)	139, 420, 578, 701
BstMWI	GCNNNNNNNGC	8 cut(s)	42, 54, 73, 144, 302, 552, 730, 781
BstNSI	RCATGY	1 cut(s)	222
BstSFI	CTRYAG	1 cut(s)	43
BstUI	CGCG	4 cut(s)	141, 422, 548, 872
BstV1I	GCAGC	8 cut(s)	29, 57, 69, 292, 334, 337, 530, 607
BstZI	CGGCCG	2 cut(s)	136, 417
Bsu15I	ATCGAT	1 cut(s)	828
BsuTUI	ATCGAT	1 cut(s)	828
BtrI	CACGTC	1 cut(s)	802
BtsCI	GGATG	2 cut(s)	12, 26
BtsI	GCAGTG	1 cut(s)	83
BtsIMutI	CAGTG	1 cut(s)	83
CciI	TCATGA	1 cut(s)	150
CfoI	GCGC	4 cut(s)	143, 548, 796, 872
Cfr10I	RCCGGY	4 cut(s)	143, 167, 456, 573
Cfr13I	GGNCC	6 cut(s)	170, 267, 316, 365, 468, 852
ClaI	ATCGAT	1 cut(s)	828
CseI	GACGC	1 cut(s)	411
Csp6I	GTAC	1 cut(s)	454
CspAI	ACCGGT	2 cut(s)	456, 573
CviAII	CATG	4 cut(s)	151, 219, 362, 658
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	6 cut(s)	93, 444, 599, 678, 684, 856
DpnI	GATC	3 cut(s)	202, 326, 827
DpnII	GATC	3 cut(s)	200, 324, 825
EaeI	YGGCCR	3 cut(s)	136, 417, 531
EagI	CGGCCG	2 cut(s)	136, 417
Eam1104I	CTCTTC	1 cut(s)	812
EarI	CTCTTC	1 cut(s)	812
EciI	GGCGGA	1 cut(s)	241
EclXI	CGGCCG	2 cut(s)	136, 417
Eco130I	CCWWGG	2 cut(s)	402, 483
Eco147I	AGGCCT	2 cut(s)	67, 380
Eco24I	GRGCYC	2 cut(s)	92, 515
Eco47I	GGWCC	3 cut(s)	267, 468, 852
Eco52I	CGGCCG	2 cut(s)	136, 417
Eco57I	CTGAAG	2 cut(s)	332, 363
Eco72I	CACGTG	2 cut(s)	397, 791
EcoO109I	RGGNCCY	1 cut(s)	852
EcoT14I	CCWWGG	2 cut(s)	402, 483
EcoT38I	GRGCYC	2 cut(s)	92, 515
ErhI	CCWWGG	2 cut(s)	402, 483
FaeI	CATG	4 cut(s)	154, 222, 365, 661
FaiI	YATR	6 cut(s)	152, 211, 220, 363, 659, 837
FaqI	GGGAC	1 cut(s)	82
FatI	CATG	4 cut(s)	150, 218, 361, 657
FauI	CCCGC	2 cut(s)	215, 541
FblI	GTMKAC	1 cut(s)	578
FokI	GGATG	2 cut(s)	19, 33
FriOI	GRGCYC	2 cut(s)	92, 515
FspAI	RTGCGCAY	1 cut(s)	795
FspI	TGCGCA	1 cut(s)	795
GlaI	GCGC	4 cut(s)	142, 547, 795, 871
GsaI	CCCAGC	1 cut(s)	773
GsuI	CTGGAG	1 cut(s)	779
HapII	CCGG	9 cut(s)	144, 168, 270, 457, 516, 574, 701, 707, 809
HgaI	GACGC	1 cut(s)	411
HhaI	GCGC	4 cut(s)	143, 548, 796, 872
Hin1II	CATG	4 cut(s)	154, 222, 365, 661
Hin6I	GCGC	4 cut(s)	141, 546, 794, 870
HinP1I	GCGC	4 cut(s)	141, 546, 794, 870
HincII	GTYRAC	1 cut(s)	579
HindII	GTYRAC	1 cut(s)	579
HinfI	GANTC	7 cut(s)	95, 448, 527, 583, 590, 601, 710
HpaII	CCGG	9 cut(s)	144, 168, 270, 457, 516, 574, 701, 707, 809
HphI	GGTGA	2 cut(s)	596, 823
Hpy166II	GTNNAC	3 cut(s)	235, 579, 631
Hpy188I	TCNGA	3 cut(s)	343, 613, 670
Hpy188III	TCNNGA	7 cut(s)	151, 270, 463, 516, 587, 740, 758
Hpy8I	GTNNAC	3 cut(s)	235, 579, 631
Hpy99I	CGWCG	7 cut(s)	427, 476, 527, 583, 598, 806, 869
HpyAV	CCTTC	2 cut(s)	307, 737
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4IV	ACGT	4 cut(s)	396, 627, 790, 801
HpyCH4V	TGCA	4 cut(s)	45, 57, 76, 191
HpyF10VI	GCNNNNNNNGC	8 cut(s)	42, 54, 73, 144, 302, 552, 730, 781
HpyF3I	CTNAG	6 cut(s)	93, 444, 599, 678, 684, 856
HpySE526I	ACGT	4 cut(s)	396, 627, 790, 801
Hsp92II	CATG	4 cut(s)	154, 222, 365, 661
HspAI	GCGC	4 cut(s)	141, 546, 794, 870
Kpn2I	TCCGGA	2 cut(s)	269, 515
KpnI	GGTACC	1 cut(s)	457
KroI	GCCGGC	2 cut(s)	143, 167
KroNI	GCCGGC	2 cut(s)	145, 169
Kzo9I	GATC	3 cut(s)	200, 324, 825
LmnI	GCTCC	4 cut(s)	518, 518, 703, 760
Lsp1109I	GCAGC	8 cut(s)	29, 57, 69, 292, 334, 337, 530, 607
LweI	GCATC	3 cut(s)	11, 69, 820
MaeII	ACGT	4 cut(s)	396, 627, 790, 801
MaeIII	GTNAC	3 cut(s)	584, 602, 786
MalI	GATC	3 cut(s)	202, 326, 827
MboI	GATC	3 cut(s)	200, 324, 825
MboII	GAAGA	2 cut(s)	826, 829
MhlI	GDGCHC	2 cut(s)	92, 515
MluCI	AATT	1 cut(s)	52
MlyI	GAGTC	7 cut(s)	104, 442, 521, 592, 599, 610, 719
MroI	TCCGGA	2 cut(s)	269, 515
MroNI	GCCGGC	2 cut(s)	143, 167
MseI	TTAA	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	860
MspI	CCGG	9 cut(s)	144, 168, 270, 457, 516, 574, 701, 707, 809
MvnI	CGCG	4 cut(s)	141, 422, 548, 872
MwoI	GCNNNNNNNGC	8 cut(s)	42, 54, 73, 144, 302, 552, 730, 781
NaeI	GCCGGC	2 cut(s)	145, 169
NdeII	GATC	3 cut(s)	200, 324, 825
NgoMIV	GCCGGC	2 cut(s)	143, 167
NlaIII	CATG	4 cut(s)	154, 222, 365, 661
NlaIV	GGNNCC	6 cut(s)	172, 455, 514, 520, 705, 780
NmeAIII	GCCGAG	2 cut(s)	395, 509
NmuCI	GTSAC	3 cut(s)	584, 602, 786
NsbI	TGCGCA	1 cut(s)	795
NspI	RCATGY	1 cut(s)	222
PaeI	GCATGC	1 cut(s)	222
PagI	TCATGA	1 cut(s)	150
PceI	AGGCCT	2 cut(s)	67, 380
PcsI	WCGNNNNNNNCGW	4 cut(s)	171, 422, 431, 536
PdiI	GCCGGC	2 cut(s)	145, 169
PinAI	ACCGGT	2 cut(s)	456, 573
PleI	GAGTC	7 cut(s)	103, 442, 521, 591, 598, 609, 718
PmaCI	CACGTG	2 cut(s)	397, 791
PmlI	CACGTG	2 cut(s)	397, 791
PpsI	GAGTC	7 cut(s)	103, 442, 521, 591, 598, 609, 718
Ppu21I	YACGTR	2 cut(s)	397, 791
PpuMI	RGGWCCY	1 cut(s)	852
Psp5II	RGGWCCY	1 cut(s)	852
PspCI	CACGTG	2 cut(s)	397, 791
PspFI	CCCAGC	1 cut(s)	769
PspN4I	GGNNCC	6 cut(s)	172, 455, 514, 520, 705, 780
PspPI	GGNCC	6 cut(s)	170, 267, 316, 365, 468, 852
PspPPI	RGGWCCY	1 cut(s)	852
PsrI	GAACNNNNNNTAC	2 cut(s)	227, 259
PstI	CTGCAG	1 cut(s)	47
PvuII	CAGCTG	1 cut(s)	860
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
SalI	GTCGAC	1 cut(s)	577
SaqAI	TTAA	1 cut(s)	84
Sau3AI	GATC	3 cut(s)	200, 324, 825
Sau96I	GGNCC	6 cut(s)	170, 267, 316, 365, 468, 852
SchI	GAGTC	7 cut(s)	104, 442, 521, 592, 599, 610, 719
SduI	GDGCHC	2 cut(s)	92, 515
SfaNI	GCATC	3 cut(s)	11, 69, 820
SfcI	CTRYAG	1 cut(s)	43
SfiI	GGCCNNNNNGGCC	1 cut(s)	144
SinI	GGWCC	3 cut(s)	267, 468, 852
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
SphI	GCATGC	1 cut(s)	222
Sse9I	AATT	1 cut(s)	52
SseBI	AGGCCT	2 cut(s)	67, 380
StuI	AGGCCT	2 cut(s)	67, 380
StyI	CCWWGG	2 cut(s)	402, 483
TaaI	ACNGT	1 cut(s)	115
TaiI	ACGT	4 cut(s)	399, 630, 793, 804
TaqI	TCGA	6 cut(s)	199, 332, 425, 578, 697, 828
TasI	AATT	1 cut(s)	52
TauI	GCSGC	4 cut(s)	141, 296, 422, 620
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	83
TseFI	GTSAC	3 cut(s)	584, 602, 786
TseI	GCWGC	8 cut(s)	42, 45, 57, 280, 347, 350, 543, 620
Tsp45I	GTSAC	3 cut(s)	584, 602, 786
TspDTI	ATGAA	1 cut(s)	167
TspGWI	ACGGA	4 cut(s)	173, 460, 648, 665
TspRI	CASTG	1 cut(s)	83
VpaK11BI	GGWCC	3 cut(s)	267, 468, 852
XceI	RCATGY	1 cut(s)	222
XmiI	GTMKAC	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.