Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007523

Physical Location & Seq

Genomic Coordinates Forward (+)

63118887 .. 63120916

Gene Structure 2030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0498400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCGGAGCTGGAAGTTCCGAGAGGCAACAACTCCATCCCGCTAGGTAAACGACGTCGTCTGTTCGATCCAAGCCGGCGTCTTCCTGGACTTCATGATCATCCCGGAGCACGTGTTCGAGATCCTCTCCTCCGATTGGAGCAAGTACGACGTTGCATCATCGCCACCGCCTCCGTCGTCAAATCGATCAAGGACATAAAAGGAGCTGCCTTCTTCGCTGCCCACGAGCTCCAAGAACTACTGGGAAGTTGTTTAGTTATGGTAAGCCAAGAAGCGAGCCAAGCTAGATTTCGAGTATTGAAACATGAAAATGGGATTGATGGGAGCGCCACCATAATTTCAACCTCTTCAGGATTGCCAGATGTGCACGAAGTTGAGGGAGATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

129

Amino Acids

14.16

Weight (kDa)

8.77

Isoelectric Point (pI)

45.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45110 FvH4_6g45120 FvH4_6g45130
malus_domestica	MD09G1089400.v1.1 MD17G1078800.v1.1
prunus_persica	Prupe.3G236000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0162511 RchiOBHm_Chr2g0162531
rosa_laevigata	RLG00000021350 RLG00000021351
rosa_multiflora	Rmu_sc0004206.1_g000012
rosa_roxburghii	Rroxscaffold_2G00087840 Rroxscaffold_2G00087870
rosa_rugosa	Rorug02G0498200 Rorug02G0498400
rosa_samantha	Rh2AG564200 Rh2AG564300 Rh2BG576800 Rh2BG576900 Rh2CG546800 Rh2CG546900 Rh2DG586600 Rh2DG586700
rosa_wichuraiana	Rw2G046670 Rw2G046680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	58
AciI	CCGC	3 cut(s)	5, 41, 168
AclWI	GGATC	2 cut(s)	62, 116
AcuI	CTGAAG	1 cut(s)	333
AcvI	CACGTG	1 cut(s)	113
AcyI	GRCGYC	2 cut(s)	55, 79
AfaI	GTAC	1 cut(s)	147
AfiI	CCNNNNNNNGG	1 cut(s)	136
AflIII	ACRYGT	1 cut(s)	112
AgsI	TTSAA	2 cut(s)	301, 342
AjnI	CCWGG	1 cut(s)	85
AjuI	GAANNNNNNNTTGG	2 cut(s)	273, 305
AloI	GAACNNNNNNTCC	2 cut(s)	99, 131
AluBI	AGCT	4 cut(s)	10, 206, 229, 284
AluI	AGCT	4 cut(s)	10, 206, 229, 284
Alw21I	GWGCWC	3 cut(s)	112, 231, 369
Alw44I	GTGCAC	1 cut(s)	365
AlwI	GGATC	2 cut(s)	62, 116
ApaLI	GTGCAC	1 cut(s)	365
ApeKI	GCWGC	2 cut(s)	206, 218
AspLEI	GCGC	1 cut(s)	329
AsuC2I	CCSGG	1 cut(s)	105
BaeGI	GKGCMC	1 cut(s)	369
BanII	GRGCYC	1 cut(s)	231
BauI	CACGAG	1 cut(s)	224
BbrPI	CACGTG	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	74
Bbv12I	GWGCWC	3 cut(s)	112, 231, 369
BbvI	GCAGC	2 cut(s)	193, 205
BccI	CCATC	2 cut(s)	44, 314
BciT130I	CCWGG	1 cut(s)	87
BclI	TGATCA	1 cut(s)	97
BcnI	CCSGG	1 cut(s)	105
BfaI	CTAG	2 cut(s)	44, 285
BfoI	RGCGCY	1 cut(s)	330
BisI	GCNGC	2 cut(s)	207, 219
BlsI	GCNGC	2 cut(s)	208, 220
Bme1390I	CCNGG	2 cut(s)	87, 105
BmrFI	CCNGG	2 cut(s)	87, 105
BmrI	ACTGGG	1 cut(s)	251
BmsI	GCATC	1 cut(s)	165
BmuI	ACTGGG	1 cut(s)	251
BpiI	GAAGAC	1 cut(s)	74
BplI	GAGNNNNNCTC	2 cut(s)	111, 143
BpuMI	CCSGG	1 cut(s)	105
Bsa29I	ATCGAT	1 cut(s)	185
BsaAI	YACGTR	1 cut(s)	113
BsaHI	GRCGYC	2 cut(s)	55, 79
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse118I	RCCGGY	1 cut(s)	75
Bse1I	ACTGG	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	87
BseCI	ATCGAT	1 cut(s)	185
BseGI	GGATG	2 cut(s)	36, 100
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseNI	ACTGG	1 cut(s)	246
BseRI	GAGGAG	1 cut(s)	119
BseSI	GKGCMC	1 cut(s)	369
BseXI	GCAGC	2 cut(s)	193, 205
BshVI	ATCGAT	1 cut(s)	185
BsiHKAI	GWGCWC	3 cut(s)	112, 231, 369
BsiSI	CCGG	2 cut(s)	76, 105
BslI	CCNNNNNNNGG	1 cut(s)	136
Bsp1286I	GDGCHC	3 cut(s)	112, 231, 369
Bsp143I	GATC	5 cut(s)	67, 97, 121, 186, 382
BspACI	CCGC	3 cut(s)	5, 41, 168
BspDI	ATCGAT	1 cut(s)	185
BspHI	TCATGA	1 cut(s)	94
BspPI	GGATC	2 cut(s)	62, 116
BsrFI	RCCGGY	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	246
BssAI	RCCGGY	1 cut(s)	75
BssMI	GATC	5 cut(s)	67, 97, 121, 186, 382
BssNI	GRCGYC	2 cut(s)	55, 79
BssSI	CACGAG	1 cut(s)	224
Bst2BI	CACGAG	1 cut(s)	224
Bst2UI	CCWGG	1 cut(s)	87
Bst6I	CTCTTC	1 cut(s)	352
BstACI	GRCGYC	2 cut(s)	55, 79
BstBAI	YACGTR	1 cut(s)	113
BstC8I	GCNNGC	2 cut(s)	77, 277
BstF5I	GGATG	2 cut(s)	36, 100
BstH2I	RGCGCY	1 cut(s)	330
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	5 cut(s)	70, 100, 124, 189, 385
BstMBI	GATC	5 cut(s)	67, 97, 121, 186, 382
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 281, 364
BstNI	CCWGG	1 cut(s)	87
BstSCI	CCNGG	2 cut(s)	85, 103
BstSLI	GKGCMC	1 cut(s)	369
BstV1I	GCAGC	2 cut(s)	193, 205
BstV2I	GAAGAC	1 cut(s)	74
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
Bsu15I	ATCGAT	1 cut(s)	185
BsuTUI	ATCGAT	1 cut(s)	185
BtgZI	GCGATG	1 cut(s)	145
BtsCI	GGATG	2 cut(s)	36, 100
Cac8I	GCNNGC	2 cut(s)	77, 277
CciI	TCATGA	1 cut(s)	94
CfoI	GCGC	1 cut(s)	329
Cfr10I	RCCGGY	1 cut(s)	75
ClaI	ATCGAT	1 cut(s)	185
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	146
CviAII	CATG	2 cut(s)	95, 305
CviJI	RGCY	7 cut(s)	10, 75, 206, 229, 267, 279, 284
CviKI_1	RGCY	7 cut(s)	10, 75, 206, 229, 267, 279, 284
CviQI	GTAC	1 cut(s)	146
DpnI	GATC	5 cut(s)	69, 99, 123, 188, 384
DpnII	GATC	5 cut(s)	67, 97, 121, 186, 382
Eam1104I	CTCTTC	1 cut(s)	352
EarI	CTCTTC	1 cut(s)	352
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	231
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	333
Eco72I	CACGTG	1 cut(s)	113
EcoICRI	GAGCTC	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	85
EcoT38I	GRGCYC	1 cut(s)	231
FaeI	CATG	2 cut(s)	98, 308
FaiI	YATR	5 cut(s)	96, 197, 260, 306, 335
FatI	CATG	2 cut(s)	94, 304
FauI	CCCGC	1 cut(s)	48
FbaI	TGATCA	1 cut(s)	97
Fnu4HI	GCNGC	2 cut(s)	207, 219
FokI	GGATG	2 cut(s)	23, 87
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	2 cut(s)	207, 219
FspBI	CTAG	2 cut(s)	44, 285
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	2 cut(s)	207, 219
HaeII	RGCGCY	1 cut(s)	330
HapII	CCGG	2 cut(s)	76, 105
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	1 cut(s)	329
Hin1I	GRCGYC	2 cut(s)	55, 79
Hin1II	CATG	2 cut(s)	98, 308
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HpaII	CCGG	2 cut(s)	76, 105
Hpy166II	GTNNAC	2 cut(s)	50, 367
Hpy188I	TCNGA	2 cut(s)	21, 134
Hpy188III	TCNNGA	3 cut(s)	95, 119, 351
Hpy8I	GTNNAC	2 cut(s)	50, 367
Hpy99I	CGWCG	4 cut(s)	57, 60, 153, 179
HpyAV	CCTTC	1 cut(s)	220
HpyCH4IV	ACGT	3 cut(s)	55, 112, 151
HpyCH4V	TGCA	2 cut(s)	156, 367
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 281, 364
HpySE526I	ACGT	3 cut(s)	55, 112, 151
Hsp92I	GRCGYC	2 cut(s)	55, 79
Hsp92II	CATG	2 cut(s)	98, 308
HspAI	GCGC	1 cut(s)	327
KroI	GCCGGC	1 cut(s)	75
KroNI	GCCGGC	1 cut(s)	77
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	5 cut(s)	67, 97, 121, 186, 382
LmnI	GCTCC	6 cut(s)	7, 107, 139, 203, 234, 324
LpnPI	CCDG	7 cut(s)	72, 89, 99, 118, 227, 336, 372
Lsp1109I	GCAGC	2 cut(s)	193, 205
LweI	GCATC	1 cut(s)	165
MaeI	CTAG	2 cut(s)	44, 285
MaeII	ACGT	3 cut(s)	55, 112, 151
MalI	GATC	5 cut(s)	69, 99, 123, 188, 384
MboI	GATC	5 cut(s)	67, 97, 121, 186, 382
MboII	GAAGA	3 cut(s)	74, 205, 339
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	3 cut(s)	112, 231, 369
MluCI	AATT	1 cut(s)	336
MnlI	CCTC	6 cut(s)	17, 135, 140, 181, 355, 370
MroNI	GCCGGC	1 cut(s)	75
MslI	CAYNNNNRTG	1 cut(s)	309
MspI	CCGG	2 cut(s)	76, 105
MspR9I	CCNGG	2 cut(s)	87, 105
MvaI	CCWGG	1 cut(s)	87
MwoI	GCNNNNNNNGC	3 cut(s)	215, 281, 364
NaeI	GCCGGC	1 cut(s)	77
NciI	CCSGG	1 cut(s)	105
NdeII	GATC	5 cut(s)	67, 97, 121, 186, 382
NgoMIV	GCCGGC	1 cut(s)	75
NlaIII	CATG	2 cut(s)	98, 308
PagI	TCATGA	1 cut(s)	94
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PdiI	GCCGGC	1 cut(s)	77
PflFI	GACNNNGTC	1 cut(s)	57
PfoI	TCCNGGA	2 cut(s)	85, 103
PkrI	GCNGC	2 cut(s)	208, 220
PmaCI	CACGTG	1 cut(s)	113
PmlI	CACGTG	1 cut(s)	113
Ppu21I	YACGTR	1 cut(s)	113
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	85
PspCI	CACGTG	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	121
PsyI	GACNNNGTC	1 cut(s)	57
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
RseI	CAYNNNNRTG	1 cut(s)	309
SacI	GAGCTC	1 cut(s)	231
SatI	GCNGC	2 cut(s)	207, 219
Sau3AI	GATC	5 cut(s)	67, 97, 121, 186, 382
ScrFI	CCNGG	2 cut(s)	87, 105
SduI	GDGCHC	3 cut(s)	112, 231, 369
SetI	ASST	9 cut(s)	12, 49, 58, 115, 154, 208, 231, 286, 347
SfaNI	GCATC	1 cut(s)	165
SmiMI	CAYNNNNRTG	1 cut(s)	309
Sse9I	AATT	1 cut(s)	336
SsiI	CCGC	3 cut(s)	5, 41, 168
SspMI	CTAG	2 cut(s)	44, 285
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	2 cut(s)	85, 103
TaiI	ACGT	3 cut(s)	58, 115, 154
TaqI	TCGA	4 cut(s)	66, 118, 185, 292
TasI	AATT	1 cut(s)	336
TseI	GCWGC	2 cut(s)	206, 218
TspDTI	ATGAA	2 cut(s)	83, 321
TspGWI	ACGGA	1 cut(s)	163
Tth111I	GACNNNGTC	1 cut(s)	57
VneI	GTGCAC	1 cut(s)	365
XspI	CTAG	2 cut(s)	44, 285
ZraI	GACGTC	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.