Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0007523

Physical Location & Seq

Genomic Coordinates Forward (+)

73944826 .. 73945958

Gene Structure 1133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G046670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGATGGTCCAAGATCAGCAGTTCCCAGGTCCCCACGGGCGTAACGCTCCTCGGTACGCTCCAGCCGGAGCTCACCGCTCAAGACATCCTTGCCTAAAATGCTATTGTTGGTGCTGTTGTGGCCTTTTTGTCCTCCTATTGCTATTCGCAGGCGTCGTTGCCGCGGGCTTTGCAATAATCAATCCCAGCTATCCCAAATACGTCATTTCTGACCTCACCTCCAATGCCTTCAACCTGACAGAGGATTTCAACCTCCACGCTGGCTTTGTGGTCACGGTCGTAGCCAACAACCCTAACAAATATATCAGCATTGTCTACGGGAAGGACAGCTCCCTAGACCTCTCTTTTAGAAACGAAACGTTTAGAAACGGATCGTCATCCTTTGTCAAGCTTTGTTCTGGGATGATCCCGGAGTTCAAGCAACCCACAACCAATATCACATCGATGAAAATTGACCTCAAAGGTGACTTAACCAAGGGTGACTTTACCACCGGTAAAAATAATTCCGTCGCCGCTACTAACTTCAATGACAAGGTGAAGAGCAACAGCATCCCTTTGGTCGTTGCAGTCAAGACACGTTTAAACTTGATCATTTTAGGCAAGGAAATCAATCACATGCAGGTTGGGATTGCAACCAACTGCTCCATGGACGTTAATACTTTGTCTGCAGGCAAGGAAATAAAGATGTCAAACATCACATATTACTCGGTTGTTTTAAATTTTCATCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

243

Amino Acids

26.64

Weight (kDa)

9.09

Isoelectric Point (pI)

25.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45110 FvH4_6g45120 FvH4_6g45130
malus_domestica	MD09G1089400.v1.1 MD17G1078800.v1.1
prunus_persica	Prupe.3G236000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0162511 RchiOBHm_Chr2g0162531
rosa_laevigata	RLG00000021350 RLG00000021351
rosa_multiflora	Rmu_sc0004206.1_g000012
rosa_roxburghii	Rroxscaffold_2G00087840 Rroxscaffold_2G00087870
rosa_rugosa	Rorug02G0498200 Rorug02G0498400
rosa_samantha	Rh2AG564200 Rh2AG564300 Rh2BG576800 Rh2BG576900 Rh2CG546800 Rh2CG546900 Rh2DG586600 Rh2DG586700
rosa_wichuraiana	Rw2G046670 Rw2G046680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	610
AccBSI	CCGCTC	1 cut(s)	78
AccI	GTMKAC	1 cut(s)	315
AccII	CGCG	1 cut(s)	164
AciI	CCGC	4 cut(s)	76, 162, 164, 513
AclI	AACGTT	1 cut(s)	359
AclWI	GGATC	2 cut(s)	379, 400
AcsI	RAATTY	1 cut(s)	718
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	241
AflIII	ACRYGT	1 cut(s)	575
AgeI	ACCGGT	1 cut(s)	491
AgsI	TTSAA	4 cut(s)	232, 250, 418, 526
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	4 cut(s)	71, 189, 330, 391
AluI	AGCT	4 cut(s)	71, 189, 330, 391
Alw21I	GWGCWC	1 cut(s)	73
AlwI	GGATC	2 cut(s)	379, 400
AoxI	GGCC	1 cut(s)	121
ApoI	RAATTY	1 cut(s)	718
AsiGI	ACCGGT	1 cut(s)	491
AspS9I	GGNCC	2 cut(s)	7, 29
AsuC2I	CCSGG	1 cut(s)	410
AsuHPI	GGTGA	5 cut(s)	65, 208, 476, 491, 547
AvaII	GGWCC	2 cut(s)	7, 29
BanII	GRGCYC	1 cut(s)	73
Bbv12I	GWGCWC	1 cut(s)	73
BciT130I	CCWGG	1 cut(s)	27
BclI	TGATCA	1 cut(s)	588
BcnI	CCSGG	1 cut(s)	410
BfaI	CTAG	1 cut(s)	335
BfmI	CTRYAG	1 cut(s)	666
BfuAI	ACCTGC	1 cut(s)	610
BisI	GCNGC	2 cut(s)	162, 513
BlsI	GCNGC	2 cut(s)	163, 514
Bme1390I	CCNGG	2 cut(s)	27, 410
Bme18I	GGWCC	2 cut(s)	7, 29
BmgT120I	GGNCC	2 cut(s)	7, 29
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	2 cut(s)	27, 410
BmsI	GCATC	1 cut(s)	558
BpmI	CTGGAG	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	64
BpuMI	CCSGG	1 cut(s)	410
Bsa29I	ATCGAT	1 cut(s)	443
BsaBI	GATNNNNATC	1 cut(s)	376
BsaHI	GRCGYC	1 cut(s)	153
BsaJI	CCNNGG	6 cut(s)	25, 34, 50, 162, 474, 645
BsaWI	WCCGGW	1 cut(s)	491
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse118I	RCCGGY	1 cut(s)	491
Bse8I	GATNNNNATC	1 cut(s)	376
BseBI	CCWGG	1 cut(s)	27
BseCI	ATCGAT	1 cut(s)	443
BseDI	CCNNGG	6 cut(s)	25, 34, 50, 162, 474, 645
BseGI	GGATG	5 cut(s)	85, 377, 408, 549, 724
BseJI	GATNNNNATC	1 cut(s)	376
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseRI	GAGGAG	1 cut(s)	39
BseYI	CCCAGC	1 cut(s)	185
Bsh1236I	CGCG	1 cut(s)	164
Bsh1285I	CGRYCG	1 cut(s)	279
BshFI	GGCC	1 cut(s)	123
BshTI	ACCGGT	1 cut(s)	491
BshVI	ATCGAT	1 cut(s)	443
BsiEI	CGRYCG	1 cut(s)	279
BsiHKAI	GWGCWC	1 cut(s)	73
BsiSI	CCGG	3 cut(s)	66, 410, 492
BslFI	GGGAC	1 cut(s)	15
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmFI	GGGAC	1 cut(s)	15
BsnI	GGCC	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp143I	GATC	4 cut(s)	13, 371, 405, 588
Bsp19I	CCATGG	1 cut(s)	645
BspACI	CCGC	4 cut(s)	76, 162, 164, 513
BspANI	GGCC	1 cut(s)	123
BspDI	ATCGAT	1 cut(s)	443
BspFNI	CGCG	1 cut(s)	164
BspLI	GGNNCC	1 cut(s)	31
BspMAI	CTGCAG	1 cut(s)	670
BspMI	ACCTGC	1 cut(s)	610
BspPI	GGATC	2 cut(s)	379, 400
BspQI	GCTCTTC	1 cut(s)	533
BsrBI	CCGCTC	1 cut(s)	78
BsrFI	RCCGGY	1 cut(s)	491
BssAI	RCCGGY	1 cut(s)	491
BssECI	CCNNGG	6 cut(s)	25, 34, 50, 162, 474, 645
BssMI	GATC	4 cut(s)	13, 371, 405, 588
BssNI	GRCGYC	1 cut(s)	153
BssT1I	CCWWGG	2 cut(s)	474, 645
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	277
Bst6I	CTCTTC	1 cut(s)	533
BstACI	GRCGYC	1 cut(s)	153
BstC8I	GCNNGC	4 cut(s)	151, 166, 262, 670
BstDSI	CCRYGG	3 cut(s)	34, 162, 645
BstENI	CCTNNNNNAGG	1 cut(s)	239
BstF5I	GGATG	5 cut(s)	85, 377, 408, 549, 724
BstFNI	CGCG	1 cut(s)	164
BstKTI	GATC	4 cut(s)	16, 374, 408, 591
BstMBI	GATC	4 cut(s)	13, 371, 405, 588
BstMCI	CGRYCG	1 cut(s)	279
BstMWI	GCNNNNNNNGC	3 cut(s)	99, 120, 170
BstNI	CCWGG	1 cut(s)	27
BstNSI	RCATGY	1 cut(s)	619
BstSCI	CCNGG	2 cut(s)	25, 408
BstSFI	CTRYAG	1 cut(s)	666
BstUI	CGCG	1 cut(s)	164
Bsu15I	ATCGAT	1 cut(s)	443
BsuRI	GGCC	1 cut(s)	123
BsuTUI	ATCGAT	1 cut(s)	443
BtgI	CCRYGG	3 cut(s)	34, 162, 645
BtsCI	GGATG	5 cut(s)	85, 377, 408, 549, 724
BveI	ACCTGC	1 cut(s)	610
Cac8I	GCNNGC	4 cut(s)	151, 166, 262, 670
Cfr10I	RCCGGY	1 cut(s)	491
Cfr13I	GGNCC	2 cut(s)	7, 29
Cfr42I	CCGCGG	1 cut(s)	165
ClaI	ATCGAT	1 cut(s)	443
CseI	GACGC	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	55
CspAI	ACCGGT	1 cut(s)	491
CviAII	CATG	2 cut(s)	616, 646
CviJI	RGCY	9 cut(s)	65, 71, 123, 168, 189, 264, 284, 330, 391
CviKI_1	RGCY	9 cut(s)	65, 71, 123, 168, 189, 264, 284, 330, 391
CviQI	GTAC	1 cut(s)	55
DpnI	GATC	4 cut(s)	15, 373, 407, 590
DpnII	GATC	4 cut(s)	13, 371, 405, 588
DraI	TTTAAA	2 cut(s)	582, 717
Eam1104I	CTCTTC	1 cut(s)	533
EarI	CTCTTC	1 cut(s)	533
Ecl136II	GAGCTC	1 cut(s)	71
Eco130I	CCWWGG	2 cut(s)	474, 645
Eco24I	GRGCYC	1 cut(s)	73
Eco47I	GGWCC	2 cut(s)	7, 29
Eco53kI	GAGCTC	1 cut(s)	71
EcoICRI	GAGCTC	1 cut(s)	71
EcoNI	CCTNNNNNAGG	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	25
EcoT14I	CCWWGG	2 cut(s)	474, 645
EcoT38I	GRGCYC	1 cut(s)	73
ErhI	CCWWGG	2 cut(s)	474, 645
FaeI	CATG	2 cut(s)	619, 649
FaiI	YATR	4 cut(s)	303, 617, 647, 700
FalI	AAGNNNNNCTT	4 cut(s)	73, 105, 467, 499
FaqI	GGGAC	1 cut(s)	15
FatI	CATG	2 cut(s)	615, 645
FauI	CCCGC	1 cut(s)	157
FbaI	TGATCA	1 cut(s)	588
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	2 cut(s)	162, 513
FokI	GGATG	5 cut(s)	72, 364, 415, 536, 711
FriOI	GRGCYC	1 cut(s)	73
Fsp4HI	GCNGC	2 cut(s)	162, 513
FspBI	CTAG	1 cut(s)	335
GluI	GCNGC	2 cut(s)	162, 513
GsaI	CCCAGC	1 cut(s)	189
GsuI	CTGGAG	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	3 cut(s)	66, 410, 492
HgaI	GACGC	1 cut(s)	142
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	2 cut(s)	619, 649
HindIII	AAGCTT	1 cut(s)	389
HpaII	CCGG	3 cut(s)	66, 410, 492
HphI	GGTGA	5 cut(s)	65, 208, 476, 491, 547
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	2 cut(s)	81, 571
Hpy8I	GTNNAC	1 cut(s)	316
Hpy99I	CGWCG	2 cut(s)	158, 512
HpyAV	CCTTC	2 cut(s)	238, 316
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4IV	ACGT	4 cut(s)	201, 359, 577, 651
HpyCH4V	TGCA	5 cut(s)	173, 566, 619, 632, 668
HpyF10VI	GCNNNNNNNGC	3 cut(s)	99, 120, 170
HpySE526I	ACGT	4 cut(s)	201, 359, 577, 651
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	2 cut(s)	619, 649
Ksp22I	TGATCA	1 cut(s)	588
KspI	CCGCGG	1 cut(s)	165
Kzo9I	GATC	4 cut(s)	13, 371, 405, 588
LguI	GCTCTTC	1 cut(s)	533
LmnI	GCTCC	5 cut(s)	52, 64, 68, 335, 647
LweI	GCATC	1 cut(s)	558
MaeI	CTAG	1 cut(s)	335
MaeII	ACGT	4 cut(s)	201, 359, 577, 651
MaeIII	GTNAC	4 cut(s)	41, 271, 464, 479
MalI	GATC	4 cut(s)	15, 373, 407, 590
MbiI	CCGCTC	1 cut(s)	78
MboI	GATC	4 cut(s)	13, 371, 405, 588
MboII	GAAGA	1 cut(s)	550
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	3 cut(s)	450, 502, 718
MnlI	CCTC	8 cut(s)	60, 143, 224, 229, 235, 263, 350, 467
MseI	TTAA	4 cut(s)	470, 581, 654, 716
MslI	CAYNNNNRTG	1 cut(s)	443
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	3 cut(s)	66, 410, 492
MspR9I	CCNGG	2 cut(s)	27, 410
MssI	GTTTAAAC	1 cut(s)	582
MvaI	CCWGG	1 cut(s)	27
MvnI	CGCG	1 cut(s)	164
MwoI	GCNNNNNNNGC	3 cut(s)	99, 120, 170
NciI	CCSGG	1 cut(s)	410
NcoI	CCATGG	1 cut(s)	645
NdeII	GATC	4 cut(s)	13, 371, 405, 588
NlaIII	CATG	2 cut(s)	619, 649
NlaIV	GGNNCC	1 cut(s)	31
NmuCI	GTSAC	3 cut(s)	271, 464, 479
NspI	RCATGY	1 cut(s)	619
PciSI	GCTCTTC	1 cut(s)	533
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PfoI	TCCNGGA	1 cut(s)	408
PinAI	ACCGGT	1 cut(s)	491
PkrI	GCNGC	2 cut(s)	163, 514
PmeI	GTTTAAAC	1 cut(s)	582
PpuMI	RGGWCCY	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	73
Psp1406I	AACGTT	1 cut(s)	359
Psp5II	RGGWCCY	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	25
PspFI	CCCAGC	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	1 cut(s)	31
PspPI	GGNCC	2 cut(s)	7, 29
PspPPI	RGGWCCY	1 cut(s)	29
PstI	CTGCAG	1 cut(s)	670
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
RseI	CAYNNNNRTG	1 cut(s)	443
SacI	GAGCTC	1 cut(s)	73
SacII	CCGCGG	1 cut(s)	165
SapI	GCTCTTC	1 cut(s)	533
SaqAI	TTAA	4 cut(s)	470, 581, 654, 716
SatI	GCNGC	2 cut(s)	162, 513
Sau3AI	GATC	4 cut(s)	13, 371, 405, 588
Sau96I	GGNCC	2 cut(s)	7, 29
ScrFI	CCNGG	2 cut(s)	27, 410
SduI	GDGCHC	1 cut(s)	73
SfaNI	GCATC	1 cut(s)	558
SfcI	CTRYAG	1 cut(s)	666
Sfr303I	CCGCGG	1 cut(s)	165
SgrBI	CCGCGG	1 cut(s)	165
SinI	GGWCC	2 cut(s)	7, 29
SmiMI	CAYNNNNRTG	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
Sse9I	AATT	3 cut(s)	450, 502, 718
SsiI	CCGC	4 cut(s)	76, 162, 164, 513
SspMI	CTAG	1 cut(s)	335
SstI	GAGCTC	1 cut(s)	73
StyD4I	CCNGG	2 cut(s)	25, 408
StyI	CCWWGG	2 cut(s)	474, 645
TaaI	ACNGT	1 cut(s)	277
TaiI	ACGT	4 cut(s)	204, 362, 580, 654
TaqI	TCGA	1 cut(s)	443
TasI	AATT	3 cut(s)	450, 502, 718
TauI	GCSGC	2 cut(s)	164, 515
Tru1I	TTAA	4 cut(s)	470, 581, 654, 716
Tru9I	TTAA	4 cut(s)	470, 581, 654, 716
TseFI	GTSAC	3 cut(s)	271, 464, 479
Tsp45I	GTSAC	3 cut(s)	271, 464, 479
TspDTI	ATGAA	2 cut(s)	461, 713
TspGWI	ACGGA	2 cut(s)	384, 496
VpaK11BI	GGWCC	2 cut(s)	7, 29
XagI	CCTNNNNNAGG	1 cut(s)	239
XapI	RAATTY	1 cut(s)	718
XceI	RCATGY	1 cut(s)	619
XcmI	CCANNNNNNNNNTGG	1 cut(s)	643
XmiI	GTMKAC	1 cut(s)	315
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.