Prupe.3G236000_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0007523
Physical Location & Seq
Forward (+)
23098773 .. 23100001
1229 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G236000.1

Sequence Viewer

Length: 750 bp
ATGCACTCTGGCCCTAATCACCCTCCACCGCCCCCATACGTGATGCTTCAAGATCAAGGTGCCCCTGGCCACTATCCAGGACCCCATGGTCGCAATCCTCCCCGGTTCAATGGCCAATACCGCCCCAACGGGCGCCGCAAAAATACTTGCTTGAGGTGCTATTGTTGTTTCTATTGTTGCTTTTTCATAACCCTAGTGGTGATCATCGCAGCCGTGGTTATCAGCTTCATCATAATTAACCCGCGCGTGCCCGAGTACAAAATTAATGACTTCTCTGTCAAGGCATTCAATCTCACCCCTGATTTCAACCTCAACGCGCATTTTGTGATCACGGTAAAAGCTGAGAACCCTAACAAGCAAATCTCCATGATATATGGGAAGGGCAGCAGTGTAACCCTCTTGTATTCGGGGAAGAAGCTTTGCTCTGGGCAGGTACCAGATTTTACTCAACCCACAAAGAACACGACCATGATTAATGTAGACCTCAAAGGAGACTTGAAAGGGAGTGACTTCGGAGGCTCCTTGGGAGAGTCACTCATGGAGAAAATGAAGAGTGATAAGATCCCTTTGACTGTTGCGGTCAGGGTACCTGTAAATGCAGCGATGGGAAAAATGCATGTGTTGAAAGATCCAATGGGGATTTATGTCAACTGCTCCATGGTCGTCAATAATTTGTCCCAACCAGATAAGAAAGTAGGGATTTCAGACACAAAATATGACGTTGATTTTTCATATAAGTTCAAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

250

Amino Acids

27.67

Weight (kDa)

9.32

Isoelectric Point (pI)

24.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 87, 275
Acc36I ACCTGC 1 cut(s) 421
Acc65I GGTACC 2 cut(s) 433, 586
AccB1I GGYRCC 4 cut(s) 59, 132, 433, 586
AccI GTMKAC 1 cut(s) 480
AccII CGCG 3 cut(s) 244, 246, 317
AciI CCGC 5 cut(s) 29, 121, 136, 242, 578
AclWI GGATC 2 cut(s) 556, 623
AcoI YGGCCR 2 cut(s) 67, 112
AcyI GRCGYC 1 cut(s) 133
AfaI GTAC 3 cut(s) 257, 435, 588
AgsI TTSAA 7 cut(s) 50, 109, 289, 307, 499, 625, 742
AjnI CCWGG 2 cut(s) 64, 76
AluBI AGCT 3 cut(s) 225, 341, 418
AluI AGCT 3 cut(s) 225, 341, 418
Alw26I GTCTC 1 cut(s) 486
AlwI GGATC 2 cut(s) 556, 623
Ama87I CYCGRG 1 cut(s) 251
AoxI GGCC 3 cut(s) 10, 67, 112
ApeKI GCWGC 3 cut(s) 209, 384, 599
AseI ATTAAT 2 cut(s) 264, 474
Asp718I GGTACC 2 cut(s) 433, 586
AspLEI GCGC 3 cut(s) 135, 246, 319
AspS9I GGNCC 2 cut(s) 11, 80
AsuC2I CCSGG 1 cut(s) 103
AsuHPI GGTGA 3 cut(s) 11, 211, 286
AvaI CYCGRG 1 cut(s) 251
AvaII GGWCC 1 cut(s) 80
BaeGI GKGCMC 2 cut(s) 64, 252
BalI TGGCCA 2 cut(s) 69, 114
BanI GGYRCC 4 cut(s) 59, 132, 433, 586
BbvI GCAGC 3 cut(s) 221, 396, 611
BccI CCATC 1 cut(s) 598
BceAI ACGGC 1 cut(s) 197
BciT130I CCWGG 2 cut(s) 66, 78
BclI TGATCA 2 cut(s) 201, 327
BcnI CCSGG 1 cut(s) 103
BcoDI GTCTC 1 cut(s) 486
BfaI CTAG 1 cut(s) 194
BfoI RGCGCY 1 cut(s) 136
BfuAI ACCTGC 1 cut(s) 421
BisI GCNGC 4 cut(s) 136, 210, 385, 600
BlsI GCNGC 4 cut(s) 137, 211, 386, 601
Bme1390I CCNGG 3 cut(s) 66, 78, 103
Bme18I GGWCC 1 cut(s) 80
BmeT110I CYCGRG 1 cut(s) 251
BmgT120I GGNCC 2 cut(s) 11, 80
BmiI GGNNCC 6 cut(s) 61, 82, 134, 435, 520, 588
BmrFI CCNGG 3 cut(s) 66, 78, 103
BmsI GCATC 1 cut(s) 33
BplI GAGNNNNNCTC 2 cut(s) 519, 551
BpuEI CTTGAG 1 cut(s) 172
BpuMI CCSGG 1 cut(s) 103
BsaAI YACGTR 1 cut(s) 40
BsaHI GRCGYC 1 cut(s) 133
BsaJI CCNNGG 6 cut(s) 64, 85, 101, 213, 522, 657
BseBI CCWGG 2 cut(s) 66, 78
BseDI CCNNGG 6 cut(s) 64, 85, 101, 213, 522, 657
BseMII CTCAG 1 cut(s) 333
BseSI GKGCMC 2 cut(s) 64, 252
BseXI GCAGC 3 cut(s) 221, 396, 611
Bsh1236I CGCG 3 cut(s) 244, 246, 317
BshFI GGCC 3 cut(s) 12, 69, 114
BshNI GGYRCC 4 cut(s) 59, 132, 433, 586
BsiHKCI CYCGRG 1 cut(s) 251
BsiSI CCGG 1 cut(s) 103
BslFI GGGAC 1 cut(s) 661
BsmAI GTCTC 1 cut(s) 486
BsmFI GGGAC 1 cut(s) 661
BsmI GAATGC 1 cut(s) 284
BsnI GGCC 3 cut(s) 12, 69, 114
BsoBI CYCGRG 1 cut(s) 251
Bsp1286I GDGCHC 2 cut(s) 64, 252
Bsp143I GATC 5 cut(s) 52, 201, 327, 561, 628
Bsp19I CCATGG 2 cut(s) 85, 657
BspACI CCGC 5 cut(s) 29, 121, 136, 242, 578
BspANI GGCC 3 cut(s) 12, 69, 114
BspCNI CTCAG 1 cut(s) 334
BspFNI CGCG 3 cut(s) 244, 246, 317
BspLI GGNNCC 6 cut(s) 61, 82, 134, 435, 520, 588
BspMI ACCTGC 1 cut(s) 421
BspPI GGATC 2 cut(s) 556, 623
BspT107I GGYRCC 4 cut(s) 59, 132, 433, 586
BssECI CCNNGG 6 cut(s) 64, 85, 101, 213, 522, 657
BssMI GATC 5 cut(s) 52, 201, 327, 561, 628
BssNI GRCGYC 1 cut(s) 133
BssT1I CCWWGG 3 cut(s) 85, 522, 657
Bst2UI CCWGG 2 cut(s) 66, 78
Bst4CI ACNGT 2 cut(s) 334, 574
Bst6I CTCTTC 1 cut(s) 545
BstACI GRCGYC 1 cut(s) 133
BstBAI YACGTR 1 cut(s) 40
BstC8I GCNNGC 1 cut(s) 248
BstDEI CTNAG 1 cut(s) 342
BstDSI CCRYGG 3 cut(s) 85, 213, 657
BstFNI CGCG 3 cut(s) 244, 246, 317
BstH2I RGCGCY 1 cut(s) 136
BstHHI GCGC 3 cut(s) 135, 246, 319
BstKTI GATC 5 cut(s) 55, 204, 330, 564, 631
BstMAI GTCTC 1 cut(s) 486
BstMBI GATC 5 cut(s) 52, 201, 327, 561, 628
BstMWI GCNNNNNNNGC 2 cut(s) 120, 156
BstNI CCWGG 2 cut(s) 66, 78
BstNSI RCATGY 1 cut(s) 620
BstSCI CCNGG 3 cut(s) 64, 76, 101
BstSLI GKGCMC 2 cut(s) 64, 252
BstUI CGCG 3 cut(s) 244, 246, 317
BstV1I GCAGC 3 cut(s) 221, 396, 611
BstX2I RGATCY 2 cut(s) 561, 628
BstYI RGATCY 2 cut(s) 561, 628
BsuRI GGCC 3 cut(s) 12, 69, 114
BtgI CCRYGG 3 cut(s) 85, 213, 657
BtgZI GCGATG 2 cut(s) 190, 617
BtsI GCAGTG 1 cut(s) 394
BtsIMutI CAGTG 1 cut(s) 394
BveI ACCTGC 1 cut(s) 421
Cac8I GCNNGC 1 cut(s) 248
CfoI GCGC 3 cut(s) 135, 246, 319
Cfr13I GGNCC 2 cut(s) 11, 80
Csp6I GTAC 3 cut(s) 256, 434, 587
CviAII CATG 6 cut(s) 86, 367, 469, 538, 617, 658
CviJI RGCY 8 cut(s) 12, 69, 114, 212, 225, 341, 418, 519
CviKI_1 RGCY 8 cut(s) 12, 69, 114, 212, 225, 341, 418, 519
CviQI GTAC 3 cut(s) 256, 434, 587
DdeI CTNAG 1 cut(s) 342
DinI GGCGCC 1 cut(s) 134
DpnI GATC 5 cut(s) 54, 203, 329, 563, 630
DpnII GATC 5 cut(s) 52, 201, 327, 561, 628
DrdI GACNNNNNNGTC 2 cut(s) 87, 275
DseDI GACNNNNNNGTC 2 cut(s) 87, 275
EaeI YGGCCR 2 cut(s) 67, 112
Eam1104I CTCTTC 1 cut(s) 545
EarI CTCTTC 1 cut(s) 545
Eco130I CCWWGG 3 cut(s) 85, 522, 657
Eco47I GGWCC 1 cut(s) 80
Eco88I CYCGRG 1 cut(s) 251
EcoO109I RGGNCCY 1 cut(s) 80
EcoRII CCWGG 2 cut(s) 64, 76
EcoT14I CCWWGG 3 cut(s) 85, 522, 657
EcoT22I ATGCAT 1 cut(s) 618
EgeI GGCGCC 1 cut(s) 134
EheI GGCGCC 1 cut(s) 134
ErhI CCWWGG 3 cut(s) 85, 522, 657
FaeI CATG 6 cut(s) 89, 370, 472, 541, 620, 661
FaqI GGGAC 1 cut(s) 661
FatI CATG 6 cut(s) 85, 366, 468, 537, 616, 657
FauI CCCGC 1 cut(s) 249
FbaI TGATCA 2 cut(s) 201, 327
FblI GTMKAC 1 cut(s) 480
Fnu4HI GCNGC 4 cut(s) 136, 210, 385, 600
Fsp4HI GCNGC 4 cut(s) 136, 210, 385, 600
FspBI CTAG 1 cut(s) 194
GlaI GCGC 3 cut(s) 134, 245, 318
GluI GCNGC 4 cut(s) 136, 210, 385, 600
HaeII RGCGCY 1 cut(s) 136
HaeIII GGCC 3 cut(s) 12, 69, 114
HapII CCGG 1 cut(s) 103
HhaI GCGC 3 cut(s) 135, 246, 319
Hin1I GRCGYC 1 cut(s) 133
Hin1II CATG 6 cut(s) 89, 370, 472, 541, 620, 661
Hin6I GCGC 3 cut(s) 133, 244, 317
HinP1I GCGC 3 cut(s) 133, 244, 317
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HindIII AAGCTT 1 cut(s) 416
HinfI GANTC 1 cut(s) 530
HpaII CCGG 1 cut(s) 103
HphI GGTGA 3 cut(s) 11, 211, 286
Hpy166II GTNNAC 2 cut(s) 481, 649
Hpy188I TCNGA 2 cut(s) 515, 706
Hpy188III TCNNGA 1 cut(s) 50
Hpy8I GTNNAC 2 cut(s) 481, 649
HpyAV CCTTC 1 cut(s) 373
HpyCH4III ACNGT 2 cut(s) 334, 574
HpyCH4IV ACGT 2 cut(s) 39, 720
HpyCH4V TGCA 3 cut(s) 4, 599, 616
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 156
HpyF3I CTNAG 1 cut(s) 342
HpySE526I ACGT 2 cut(s) 39, 720
Hsp92I GRCGYC 1 cut(s) 133
Hsp92II CATG 6 cut(s) 89, 370, 472, 541, 620, 661
HspAI GCGC 3 cut(s) 133, 244, 317
KasI GGCGCC 1 cut(s) 132
KpnI GGTACC 2 cut(s) 437, 590
Ksp22I TGATCA 2 cut(s) 201, 327
Kzo9I GATC 5 cut(s) 52, 201, 327, 561, 628
LmnI GCTCC 2 cut(s) 524, 659
Lsp1109I GCAGC 3 cut(s) 221, 396, 611
LweI GCATC 1 cut(s) 33
MaeI CTAG 1 cut(s) 194
MaeII ACGT 2 cut(s) 39, 720
MaeIII GTNAC 3 cut(s) 391, 506, 531
MalI GATC 5 cut(s) 54, 203, 329, 563, 630
MboI GATC 5 cut(s) 52, 201, 327, 561, 628
MboII GAAGA 2 cut(s) 424, 562
MflI RGATCY 2 cut(s) 561, 628
MhlI GDGCHC 2 cut(s) 64, 252
MlsI TGGCCA 2 cut(s) 69, 114
MluCI AATT 3 cut(s) 234, 261, 670
MluNI TGGCCA 2 cut(s) 69, 114
Mly113I GGCGCC 1 cut(s) 133
MlyI GAGTC 1 cut(s) 539
MnlI CCTC 7 cut(s) 33, 108, 147, 320, 407, 494, 509
Mox20I TGGCCA 2 cut(s) 69, 114
Mph1103I ATGCAT 1 cut(s) 618
MscI TGGCCA 2 cut(s) 69, 114
MseI TTAA 3 cut(s) 237, 264, 474
MslI CAYNNNNRTG 1 cut(s) 467
Msp20I TGGCCA 2 cut(s) 69, 114
MspI CCGG 1 cut(s) 103
MspR9I CCNGG 3 cut(s) 66, 78, 103
Mva1269I GAATGC 1 cut(s) 284
MvaI CCWGG 2 cut(s) 66, 78
MvnI CGCG 3 cut(s) 244, 246, 317
MwoI GCNNNNNNNGC 2 cut(s) 120, 156
NarI GGCGCC 1 cut(s) 133
NciI CCSGG 1 cut(s) 103
NcoI CCATGG 2 cut(s) 85, 657
NdeII GATC 5 cut(s) 52, 201, 327, 561, 628
NlaIII CATG 6 cut(s) 89, 370, 472, 541, 620, 661
NlaIV GGNNCC 6 cut(s) 61, 82, 134, 435, 520, 588
NmuCI GTSAC 2 cut(s) 506, 531
NsiI ATGCAT 1 cut(s) 618
NspI RCATGY 1 cut(s) 620
PctI GAATGC 1 cut(s) 284
PfoI TCCNGGA 1 cut(s) 76
PkrI GCNGC 4 cut(s) 137, 211, 386, 601
PleI GAGTC 1 cut(s) 538
PluTI GGCGCC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 538
Ppu21I YACGTR 1 cut(s) 40
PpuMI RGGWCCY 1 cut(s) 80
PshBI ATTAAT 2 cut(s) 264, 474
Psp5II RGGWCCY 1 cut(s) 80
Psp6I CCWGG 2 cut(s) 64, 76
PspGI CCWGG 2 cut(s) 64, 76
PspN4I GGNNCC 6 cut(s) 61, 82, 134, 435, 520, 588
PspPI GGNCC 2 cut(s) 11, 80
PspPPI RGGWCCY 1 cut(s) 80
PsuI RGATCY 2 cut(s) 561, 628
RsaI GTAC 3 cut(s) 257, 435, 588
RsaNI GTAC 3 cut(s) 256, 434, 587
RseI CAYNNNNRTG 1 cut(s) 467
SaqAI TTAA 3 cut(s) 237, 264, 474
SatI GCNGC 4 cut(s) 136, 210, 385, 600
Sau3AI GATC 5 cut(s) 52, 201, 327, 561, 628
Sau96I GGNCC 2 cut(s) 11, 80
SchI GAGTC 1 cut(s) 539
ScrFI CCNGG 3 cut(s) 66, 78, 103
SduI GDGCHC 2 cut(s) 64, 252
SfaNI GCATC 1 cut(s) 33
SfoI GGCGCC 1 cut(s) 134
SinI GGWCC 1 cut(s) 80
SmiMI CAYNNNNRTG 1 cut(s) 467
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
Sse9I AATT 3 cut(s) 234, 261, 670
SsiI CCGC 5 cut(s) 29, 121, 136, 242, 578
SspDI GGCGCC 1 cut(s) 132
SspMI CTAG 1 cut(s) 194
StyD4I CCNGG 3 cut(s) 64, 76, 101
StyI CCWWGG 3 cut(s) 85, 522, 657
TaaI ACNGT 2 cut(s) 334, 574
TaiI ACGT 2 cut(s) 42, 723
TasI AATT 3 cut(s) 234, 261, 670
TatI WGTACW 1 cut(s) 255
TauI GCSGC 1 cut(s) 138
Tru1I TTAA 3 cut(s) 237, 264, 474
Tru9I TTAA 3 cut(s) 237, 264, 474
TscAI CASTG 1 cut(s) 394
TseFI GTSAC 2 cut(s) 506, 531
TseI GCWGC 3 cut(s) 209, 384, 599
Tsp45I GTSAC 2 cut(s) 506, 531
TspDTI ATGAA 4 cut(s) 175, 217, 563, 720
TspRI CASTG 1 cut(s) 394
VpaK11BI GGWCC 1 cut(s) 80
VspI ATTAAT 2 cut(s) 264, 474
XceI RCATGY 1 cut(s) 620
XmiI GTMKAC 1 cut(s) 480
XspI CTAG 1 cut(s) 194
Zsp2I ATGCAT 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.