Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0007523

Physical Location & Seq

Genomic Coordinates Reverse (-)

6520895 .. 6521626

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1078800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGCACCCCGGCCCCAATCACCCTCCGCCGTACGTGATGCTCCAAGATCAAGGCCATCCAGGTCCCCATGGCCGCAATCCTCCTCGCTTTAATGGCCAATACCGTCCCAATGGGCACCGCAAAAGCAGTTGTCTGAGATGCTACTGTTGTTGTTATTGTTGCATCTTCATAACCCTAGTGGTGATCATTGCAGCCGTGGTCATCAGCCTAATAATTATCAATCCCAGTGTGCCCAAATACAGTATTAATGACTTCTCTGTCAAGGCATTCAACGTCACCCCTGATTTCAACCTCCACGCGCAATTTATGGTCACGGTAAAAGCTGTGAATCCCAACAAAAAAATCTCCATTATATATGAGAAGGGCAGCACCGTGCAGCTCAAGTATTCCGGGATGAAGCTTTGTACCGGGGTGGTCCCACATTTTCGTCAACCGACGAGCAATACAACCATGATCAACGTGGATTTGAACGGAGACTTGAAAGGGAGTGACTTTCAGGGATCCATAGGGGAGTCACTTATGAAGAAAATCAAGAGTGGCAGGGTCCCTTTGACTGTTTCAGTTAGGGTACCGGTCAATGTAGGGCTTGGGAATTACAATATGTTGCTGAATCCAATCGGGATTTACGTCGATGCCTCCATGGTTGTCAACAATTTGTCCCAGCCAGATAAGAAAGTACAGATTTCAGACACTAAATATGACTTTAATTTTGGATTTAAGTTCAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

244

Amino Acids

26.97

Weight (kDa)

9.56

Isoelectric Point (pI)

16.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45110 FvH4_6g45120 FvH4_6g45130
malus_domestica	MD09G1089400.v1.1 MD17G1078800.v1.1
prunus_persica	Prupe.3G236000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0162511 RchiOBHm_Chr2g0162531
rosa_laevigata	RLG00000021350 RLG00000021351
rosa_multiflora	Rmu_sc0004206.1_g000012
rosa_roxburghii	Rroxscaffold_2G00087840 Rroxscaffold_2G00087870
rosa_rugosa	Rorug02G0498200 Rorug02G0498400
rosa_samantha	Rh2AG564200 Rh2AG564300 Rh2BG576800 Rh2BG576900 Rh2CG546800 Rh2CG546900 Rh2DG586600 Rh2DG586700
rosa_wichuraiana	Rw2G046670 Rw2G046680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	257
Acc65I	GGTACC	1 cut(s)	568
AccB1I	GGYRCC	2 cut(s)	114, 568
AccII	CGCG	1 cut(s)	299
AciI	CCGC	3 cut(s)	26, 73, 118
AclWI	GGATC	2 cut(s)	495, 508
AcoI	YGGCCR	2 cut(s)	70, 94
AfaI	GTAC	4 cut(s)	32, 406, 570, 678
AgeI	ACCGGT	1 cut(s)	571
AgsI	TTSAA	5 cut(s)	271, 289, 469, 481, 724
AjnI	CCWGG	1 cut(s)	58
AluBI	AGCT	3 cut(s)	323, 379, 400
AluI	AGCT	3 cut(s)	323, 379, 400
Alw26I	GTCTC	1 cut(s)	468
AlwI	GGATC	2 cut(s)	495, 508
AoxI	GGCC	4 cut(s)	10, 52, 70, 94
ApeKI	GCWGC	3 cut(s)	191, 366, 376
ArsI	GACNNNNNNTTYG	2 cut(s)	692, 724
AseI	ATTAAT	1 cut(s)	246
AsiGI	ACCGGT	1 cut(s)	571
Asp718I	GGTACC	1 cut(s)	568
AspLEI	GCGC	1 cut(s)	301
AspS9I	GGNCC	4 cut(s)	11, 62, 415, 544
AsuC2I	CCSGG	3 cut(s)	9, 391, 409
AsuHPI	GGTGA	3 cut(s)	11, 193, 268
AvaII	GGWCC	3 cut(s)	62, 415, 544
BaeGI	GKGCMC	2 cut(s)	117, 234
BalI	TGGCCA	1 cut(s)	96
BamHI	GGATCC	1 cut(s)	500
BanI	GGYRCC	2 cut(s)	114, 568
BbvI	GCAGC	3 cut(s)	203, 378, 388
BccI	CCATC	1 cut(s)	63
BceAI	ACGGC	2 cut(s)	13, 179
BciT130I	CCWGG	1 cut(s)	60
BclI	TGATCA	2 cut(s)	183, 453
BcnI	CCSGG	3 cut(s)	9, 391, 409
BcoDI	GTCTC	1 cut(s)	468
BfaI	CTAG	1 cut(s)	176
BisI	GCNGC	4 cut(s)	73, 192, 367, 377
BlsI	GCNGC	4 cut(s)	74, 193, 368, 378
Bme1390I	CCNGG	4 cut(s)	9, 60, 391, 409
Bme18I	GGWCC	3 cut(s)	62, 415, 544
BmgT120I	GGNCC	4 cut(s)	11, 62, 415, 544
BmiI	GGNNCC	8 cut(s)	13, 64, 116, 417, 502, 545, 546, 570
BmrFI	CCNGG	4 cut(s)	9, 60, 391, 409
BmrI	ACTGGG	1 cut(s)	219
BmsI	GCATC	4 cut(s)	27, 128, 171, 622
BmuI	ACTGGG	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	365
BpuMI	CCSGG	3 cut(s)	9, 391, 409
BsaAI	YACGTR	1 cut(s)	34
BsaJI	CCNNGG	5 cut(s)	7, 67, 195, 408, 639
BsaWI	WCCGGW	1 cut(s)	571
Bse118I	RCCGGY	1 cut(s)	571
Bse1I	ACTGG	1 cut(s)	225
Bse3DI	GCAATG	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	5 cut(s)	7, 67, 195, 408, 639
BseGI	GGATG	2 cut(s)	55, 399
BseMI	GCAATG	1 cut(s)	186
BseMII	CTCAG	1 cut(s)	125
BseNI	ACTGG	1 cut(s)	225
BseRI	GAGGAG	1 cut(s)	72
BseSI	GKGCMC	2 cut(s)	117, 234
BseXI	GCAGC	3 cut(s)	203, 378, 388
BseYI	CCCAGC	1 cut(s)	660
BsgI	GTGCAG	1 cut(s)	395
Bsh1236I	CGCG	1 cut(s)	299
BshFI	GGCC	4 cut(s)	12, 54, 72, 96
BshNI	GGYRCC	2 cut(s)	114, 568
BshTI	ACCGGT	1 cut(s)	571
BsiSI	CCGG	4 cut(s)	9, 390, 408, 572
BsiWI	CGTACG	1 cut(s)	30
BslFI	GGGAC	5 cut(s)	48, 90, 401, 530, 643
BsmAI	GTCTC	1 cut(s)	468
BsmFI	GGGAC	5 cut(s)	48, 90, 401, 530, 643
BsmI	GAATGC	1 cut(s)	266
BsnI	GGCC	4 cut(s)	12, 54, 72, 96
Bsp1286I	GDGCHC	2 cut(s)	117, 234
Bsp143I	GATC	4 cut(s)	46, 183, 453, 500
Bsp19I	CCATGG	2 cut(s)	67, 639
BspACI	CCGC	3 cut(s)	26, 73, 118
BspANI	GGCC	4 cut(s)	12, 54, 72, 96
BspCNI	CTCAG	1 cut(s)	126
BspFNI	CGCG	1 cut(s)	299
BspLI	GGNNCC	8 cut(s)	13, 64, 116, 417, 502, 545, 546, 570
BspPI	GGATC	2 cut(s)	495, 508
BspT107I	GGYRCC	2 cut(s)	114, 568
BsrDI	GCAATG	1 cut(s)	186
BsrFI	RCCGGY	1 cut(s)	571
BsrI	ACTGG	1 cut(s)	225
BssAI	RCCGGY	1 cut(s)	571
BssECI	CCNNGG	5 cut(s)	7, 67, 195, 408, 639
BssMI	GATC	4 cut(s)	46, 183, 453, 500
BssT1I	CCWWGG	2 cut(s)	67, 639
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	6 cut(s)	104, 146, 242, 316, 373, 556
BstBAI	YACGTR	1 cut(s)	34
BstDEI	CTNAG	1 cut(s)	134
BstDSI	CCRYGG	3 cut(s)	67, 195, 639
BstF5I	GGATG	2 cut(s)	55, 399
BstFNI	CGCG	1 cut(s)	299
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	4 cut(s)	49, 186, 456, 503
BstMAI	GTCTC	1 cut(s)	468
BstMBI	GATC	4 cut(s)	46, 183, 453, 500
BstMWI	GCNNNNNNNGC	1 cut(s)	93
BstNI	CCWGG	1 cut(s)	60
BstSCI	CCNGG	4 cut(s)	7, 58, 389, 407
BstSLI	GKGCMC	2 cut(s)	117, 234
BstUI	CGCG	1 cut(s)	299
BstV1I	GCAGC	3 cut(s)	203, 378, 388
BstX2I	RGATCY	1 cut(s)	500
BstYI	RGATCY	1 cut(s)	500
BsuRI	GGCC	4 cut(s)	12, 54, 72, 96
BtgI	CCRYGG	3 cut(s)	67, 195, 639
BtsCI	GGATG	2 cut(s)	55, 399
BtsIMutI	CAGTG	1 cut(s)	232
CfoI	GCGC	1 cut(s)	301
Cfr10I	RCCGGY	1 cut(s)	571
Cfr13I	GGNCC	4 cut(s)	11, 62, 415, 544
Csp6I	GTAC	4 cut(s)	31, 405, 569, 677
CspAI	ACCGGT	1 cut(s)	571
CviAII	CATG	3 cut(s)	68, 451, 640
CviQI	GTAC	4 cut(s)	31, 405, 569, 677
DdeI	CTNAG	1 cut(s)	134
DpnI	GATC	4 cut(s)	48, 185, 455, 502
DpnII	GATC	4 cut(s)	46, 183, 453, 500
DrdI	GACNNNNNNGTC	1 cut(s)	257
DseDI	GACNNNNNNGTC	1 cut(s)	257
EaeI	YGGCCR	2 cut(s)	70, 94
EciI	GGCGGA	1 cut(s)	15
Eco130I	CCWWGG	2 cut(s)	67, 639
Eco47I	GGWCC	3 cut(s)	62, 415, 544
EcoO109I	RGGNCCY	2 cut(s)	62, 544
EcoRII	CCWGG	1 cut(s)	58
EcoT14I	CCWWGG	2 cut(s)	67, 639
ErhI	CCWWGG	2 cut(s)	67, 639
FaeI	CATG	3 cut(s)	71, 454, 643
FaqI	GGGAC	5 cut(s)	48, 90, 401, 530, 643
FatI	CATG	3 cut(s)	67, 450, 639
FbaI	TGATCA	2 cut(s)	183, 453
Fnu4HI	GCNGC	4 cut(s)	73, 192, 367, 377
FokI	GGATG	2 cut(s)	42, 406
Fsp4HI	GCNGC	4 cut(s)	73, 192, 367, 377
FspBI	CTAG	1 cut(s)	176
GlaI	GCGC	1 cut(s)	300
GluI	GCNGC	4 cut(s)	73, 192, 367, 377
GsaI	CCCAGC	1 cut(s)	664
HaeIII	GGCC	4 cut(s)	12, 54, 72, 96
HapII	CCGG	4 cut(s)	9, 390, 408, 572
HhaI	GCGC	1 cut(s)	301
Hin1II	CATG	3 cut(s)	71, 454, 643
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HincII	GTYRAC	2 cut(s)	431, 649
HindII	GTYRAC	2 cut(s)	431, 649
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	3 cut(s)	328, 512, 610
HpaII	CCGG	4 cut(s)	9, 390, 408, 572
HphI	GGTGA	3 cut(s)	11, 193, 268
Hpy166II	GTNNAC	2 cut(s)	431, 649
Hpy188I	TCNGA	2 cut(s)	135, 688
Hpy188III	TCNNGA	2 cut(s)	532, 619
Hpy8I	GTNNAC	2 cut(s)	431, 649
Hpy99I	CGWCG	2 cut(s)	439, 632
HpyAV	CCTTC	1 cut(s)	355
HpyCH4III	ACNGT	6 cut(s)	104, 146, 242, 316, 373, 556
HpyCH4IV	ACGT	4 cut(s)	33, 273, 459, 627
HpyCH4V	TGCA	4 cut(s)	4, 162, 191, 376
HpyF10VI	GCNNNNNNNGC	1 cut(s)	93
HpyF3I	CTNAG	1 cut(s)	134
HpySE526I	ACGT	4 cut(s)	33, 273, 459, 627
Hsp92II	CATG	3 cut(s)	71, 454, 643
HspAI	GCGC	1 cut(s)	299
KflI	GGGWCCC	1 cut(s)	544
KpnI	GGTACC	1 cut(s)	572
Ksp22I	TGATCA	2 cut(s)	183, 453
Kzo9I	GATC	4 cut(s)	46, 183, 453, 500
LmnI	GCTCC	1 cut(s)	45
Lsp1109I	GCAGC	3 cut(s)	203, 378, 388
LweI	GCATC	4 cut(s)	27, 128, 171, 622
MaeI	CTAG	1 cut(s)	176
MaeII	ACGT	4 cut(s)	33, 273, 459, 627
MaeIII	GTNAC	4 cut(s)	274, 310, 488, 513
MalI	GATC	4 cut(s)	48, 185, 455, 502
MboI	GATC	4 cut(s)	46, 183, 453, 500
MboII	GAAGA	2 cut(s)	157, 535
MflI	RGATCY	1 cut(s)	500
MhlI	GDGCHC	2 cut(s)	117, 234
MlsI	TGGCCA	1 cut(s)	96
MluCI	AATT	5 cut(s)	213, 302, 592, 652, 706
MluNI	TGGCCA	1 cut(s)	96
MlyI	GAGTC	1 cut(s)	521
MnlI	CCTC	5 cut(s)	33, 90, 93, 302, 646
Mox20I	TGGCCA	1 cut(s)	96
MscI	TGGCCA	1 cut(s)	96
MseI	TTAA	4 cut(s)	90, 246, 705, 717
Msp20I	TGGCCA	1 cut(s)	96
MspI	CCGG	4 cut(s)	9, 390, 408, 572
MspR9I	CCNGG	4 cut(s)	9, 60, 391, 409
Mva1269I	GAATGC	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	60
MvnI	CGCG	1 cut(s)	299
MwoI	GCNNNNNNNGC	1 cut(s)	93
NciI	CCSGG	3 cut(s)	9, 391, 409
NcoI	CCATGG	2 cut(s)	67, 639
NdeII	GATC	4 cut(s)	46, 183, 453, 500
NlaIII	CATG	3 cut(s)	71, 454, 643
NlaIV	GGNNCC	8 cut(s)	13, 64, 116, 417, 502, 545, 546, 570
NmuCI	GTSAC	4 cut(s)	274, 310, 488, 513
PcsI	WCGNNNNNNNCGW	1 cut(s)	624
PctI	GAATGC	1 cut(s)	266
PfeI	GAWTC	2 cut(s)	328, 610
Pfl23II	CGTACG	1 cut(s)	30
PfoI	TCCNGGA	1 cut(s)	389
PinAI	ACCGGT	1 cut(s)	571
PkrI	GCNGC	4 cut(s)	74, 193, 368, 378
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
Ppu21I	YACGTR	1 cut(s)	34
PpuMI	RGGWCCY	2 cut(s)	62, 544
PshBI	ATTAAT	1 cut(s)	246
Psp5II	RGGWCCY	2 cut(s)	62, 544
Psp6I	CCWGG	1 cut(s)	58
PspFI	CCCAGC	1 cut(s)	660
PspGI	CCWGG	1 cut(s)	58
PspLI	CGTACG	1 cut(s)	30
PspN4I	GGNNCC	8 cut(s)	13, 64, 116, 417, 502, 545, 546, 570
PspPI	GGNCC	4 cut(s)	11, 62, 415, 544
PspPPI	RGGWCCY	2 cut(s)	62, 544
PsuI	RGATCY	1 cut(s)	500
RsaI	GTAC	4 cut(s)	32, 406, 570, 678
RsaNI	GTAC	4 cut(s)	31, 405, 569, 677
SaqAI	TTAA	4 cut(s)	90, 246, 705, 717
SatI	GCNGC	4 cut(s)	73, 192, 367, 377
Sau3AI	GATC	4 cut(s)	46, 183, 453, 500
Sau96I	GGNCC	4 cut(s)	11, 62, 415, 544
SchI	GAGTC	1 cut(s)	521
ScrFI	CCNGG	4 cut(s)	9, 60, 391, 409
SduI	GDGCHC	2 cut(s)	117, 234
SetI	ASST	9 cut(s)	36, 64, 276, 294, 325, 381, 402, 462, 630
SfaNI	GCATC	4 cut(s)	27, 128, 171, 622
SinI	GGWCC	3 cut(s)	62, 415, 544
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
Sse9I	AATT	5 cut(s)	213, 302, 592, 652, 706
SsiI	CCGC	3 cut(s)	26, 73, 118
SspMI	CTAG	1 cut(s)	176
StyD4I	CCNGG	4 cut(s)	7, 58, 389, 407
StyI	CCWWGG	2 cut(s)	67, 639
TaaI	ACNGT	6 cut(s)	104, 146, 242, 316, 373, 556
TaiI	ACGT	4 cut(s)	36, 276, 462, 630
TaqI	TCGA	1 cut(s)	630
TasI	AATT	5 cut(s)	213, 302, 592, 652, 706
TatI	WGTACW	1 cut(s)	676
TauI	GCSGC	1 cut(s)	75
TfiI	GAWTC	2 cut(s)	328, 610
Tru1I	TTAA	4 cut(s)	90, 246, 705, 717
Tru9I	TTAA	4 cut(s)	90, 246, 705, 717
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	4 cut(s)	274, 310, 488, 513
TseI	GCWGC	3 cut(s)	191, 366, 376
Tsp45I	GTSAC	4 cut(s)	274, 310, 488, 513
TspDTI	ATGAA	3 cut(s)	157, 410, 536
TspGWI	ACGGA	1 cut(s)	486
TspRI	CASTG	1 cut(s)	232
VpaK11BI	GGWCC	3 cut(s)	62, 415, 544
VspI	ATTAAT	1 cut(s)	246
XcmI	CCANNNNNNNNNTGG	1 cut(s)	457
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.