FvH4_6g45130

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0007523
Physical Location & Seq
Forward (+)
34658598 .. 34659885
1288 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g45130.t1

Sequence Viewer

Length: 378 bp
ATGCACCCAGGGCCTTACAACCCACCACCTCCAGGCGCCTATCCGCCTTATGGGCCCTATTACGGCCATCCTGGCGCTGGCAGTCGTAGAGGTGGCTGCAGTTGCTCAAAGGTGTATTGTTGTTGTTGCTGCTGCTTGTTCATAATTGTAGCGCTGATCGTCGGTGCAGGTGTTGCTCTCTTTTTCATAATCACATCCAATGTACCCAAATTCTACATTGATGGCTTTGAATCCAAGTCCTTCGGTTTTAGCGACGATGGGAGCCTCAAGTCACAGCTTCAGGCCACTGTAAAAGCTGAGAATCCCACCAAGTACCTCGAATTCGTTTTTGGAGAAGCAAAGGACCCAAAGGACAACTCGTTCGAAATTTTTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

126

Amino Acids

13.58

Weight (kDa)

6.68

Isoelectric Point (pI)

38.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 158
Acc36I ACCTGC 1 cut(s) 158
AccB1I GGYRCC 1 cut(s) 35
AciI CCGC 1 cut(s) 44
AcoI YGGCCR 1 cut(s) 64
AcsI RAATTY 3 cut(s) 209, 320, 366
AcuI CTGAAG 1 cut(s) 263
AcyI GRCGYC 1 cut(s) 36
AfaI GTAC 2 cut(s) 204, 314
AfeI AGCGCT 1 cut(s) 153
AfiI CCNNNNNNNGG 4 cut(s) 32, 50, 62, 77
AgsI TTSAA 1 cut(s) 230
AjnI CCWGG 3 cut(s) 7, 31, 70
AjuI GAANNNNNNNTTGG 2 cut(s) 312, 344
AloI GAACNNNNNNTCC 2 cut(s) 344, 376
AluBI AGCT 2 cut(s) 277, 296
AluI AGCT 2 cut(s) 277, 296
Aor51HI AGCGCT 1 cut(s) 153
AoxI GGCC 4 cut(s) 11, 53, 64, 282
ApaI GGGCCC 1 cut(s) 57
ApeKI GCWGC 3 cut(s) 96, 129, 132
ApoI RAATTY 3 cut(s) 209, 320, 366
ArsI GACNNNNNNTTYG 2 cut(s) 344, 376
AspLEI GCGC 3 cut(s) 38, 77, 154
AspS9I GGNCC 4 cut(s) 11, 53, 54, 343
AsuII TTCGAA 1 cut(s) 363
AvaII GGWCC 1 cut(s) 343
BaeGI GKGCMC 1 cut(s) 57
BanI GGYRCC 1 cut(s) 35
BanII GRGCYC 1 cut(s) 57
BbvI GCAGC 3 cut(s) 83, 116, 119
BccI CCATC 3 cut(s) 75, 215, 251
BceAI ACGGC 1 cut(s) 79
BciT130I CCWGG 3 cut(s) 9, 33, 72
BfmI CTRYAG 1 cut(s) 97
BfoI RGCGCY 3 cut(s) 39, 78, 155
BfuAI ACCTGC 1 cut(s) 158
BglI GCCNNNNNGGC 2 cut(s) 52, 72
BisI GCNGC 3 cut(s) 97, 130, 133
BlsI GCNGC 3 cut(s) 98, 131, 134
Bme1390I CCNGG 3 cut(s) 9, 33, 72
Bme18I GGWCC 1 cut(s) 343
BmgT120I GGNCC 4 cut(s) 11, 53, 54, 343
BmiI GGNNCC 4 cut(s) 37, 55, 263, 345
BmrFI CCNGG 3 cut(s) 9, 33, 72
BpmI CTGGAG 1 cut(s) 15
Bpu14I TTCGAA 1 cut(s) 363
BpuEI CTTGAG 1 cut(s) 251
BsaHI GRCGYC 1 cut(s) 36
BsaJI CCNNGG 2 cut(s) 7, 8
Bsc4I CCNNNNNNNGG 4 cut(s) 32, 50, 62, 77
BseBI CCWGG 3 cut(s) 9, 33, 72
BseDI CCNNGG 2 cut(s) 7, 8
BseGI GGATG 2 cut(s) 67, 194
BseLI CCNNNNNNNGG 4 cut(s) 32, 50, 62, 77
BseMII CTCAG 1 cut(s) 288
BseSI GKGCMC 1 cut(s) 57
BseXI GCAGC 3 cut(s) 83, 116, 119
BsgI GTGCAG 1 cut(s) 186
BshFI GGCC 4 cut(s) 13, 55, 66, 284
BshNI GGYRCC 1 cut(s) 35
BslI CCNNNNNNNGG 4 cut(s) 32, 50, 62, 77
BsnI GGCC 4 cut(s) 13, 55, 66, 284
Bsp119I TTCGAA 1 cut(s) 363
Bsp120I GGGCCC 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 1 cut(s) 156
BspACI CCGC 1 cut(s) 44
BspANI GGCC 4 cut(s) 13, 55, 66, 284
BspCNI CTCAG 1 cut(s) 289
BspLI GGNNCC 4 cut(s) 37, 55, 263, 345
BspMAI CTGCAG 1 cut(s) 101
BspMI ACCTGC 1 cut(s) 158
BspT104I TTCGAA 1 cut(s) 363
BspT107I GGYRCC 1 cut(s) 35
BssECI CCNNGG 2 cut(s) 7, 8
BssMI GATC 1 cut(s) 156
BssNI GRCGYC 1 cut(s) 36
Bst2UI CCWGG 3 cut(s) 9, 33, 72
Bst4CI ACNGT 1 cut(s) 289
BstACI GRCGYC 1 cut(s) 36
BstAPI GCANNNNNTGC 1 cut(s) 173
BstBI TTCGAA 1 cut(s) 363
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 1 cut(s) 297
BstF5I GGATG 2 cut(s) 67, 194
BstH2I RGCGCY 3 cut(s) 39, 78, 155
BstHHI GCGC 3 cut(s) 38, 77, 154
BstKTI GATC 1 cut(s) 159
BstMBI GATC 1 cut(s) 156
BstMWI GCNNNNNNNGC 5 cut(s) 10, 52, 72, 102, 173
BstNI CCWGG 3 cut(s) 9, 33, 72
BstSCI CCNGG 3 cut(s) 7, 31, 70
BstSFI CTRYAG 1 cut(s) 97
BstSLI GKGCMC 1 cut(s) 57
BstV1I GCAGC 3 cut(s) 83, 116, 119
BsuRI GGCC 4 cut(s) 13, 55, 66, 284
BtsCI GGATG 2 cut(s) 67, 194
BtsIMutI CAGTG 1 cut(s) 285
BveI ACCTGC 1 cut(s) 158
Cac8I GCNNGC 1 cut(s) 79
CfoI GCGC 3 cut(s) 38, 77, 154
Cfr13I GGNCC 4 cut(s) 11, 53, 54, 343
Csp6I GTAC 2 cut(s) 203, 313
CviJI RGCY 9 cut(s) 13, 55, 66, 96, 225, 264, 277, 284, 296
CviKI_1 RGCY 9 cut(s) 13, 55, 66, 96, 225, 264, 277, 284, 296
CviQI GTAC 2 cut(s) 203, 313
DdeI CTNAG 1 cut(s) 297
DinI GGCGCC 1 cut(s) 37
DpnI GATC 1 cut(s) 158
DpnII GATC 1 cut(s) 156
EaeI YGGCCR 1 cut(s) 64
EciI GGCGGA 1 cut(s) 33
Eco24I GRGCYC 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 343
Eco47III AGCGCT 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 263
EcoO109I RGGNCCY 3 cut(s) 11, 54, 343
EcoRI GAATTC 1 cut(s) 320
EcoRII CCWGG 3 cut(s) 7, 31, 70
EcoT38I GRGCYC 1 cut(s) 57
EgeI GGCGCC 1 cut(s) 37
EheI GGCGCC 1 cut(s) 37
FaiI YATR 3 cut(s) 51, 143, 188
Fnu4HI GCNGC 3 cut(s) 97, 130, 133
FokI GGATG 2 cut(s) 54, 181
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 3 cut(s) 97, 130, 133
GlaI GCGC 3 cut(s) 37, 76, 153
GluI GCNGC 3 cut(s) 97, 130, 133
GsuI CTGGAG 1 cut(s) 15
HaeII RGCGCY 3 cut(s) 39, 78, 155
HaeIII GGCC 4 cut(s) 13, 55, 66, 284
HhaI GCGC 3 cut(s) 38, 77, 154
Hin1I GRCGYC 1 cut(s) 36
Hin6I GCGC 3 cut(s) 36, 75, 152
HinP1I GCGC 3 cut(s) 36, 75, 152
HinfI GANTC 2 cut(s) 230, 301
Hpy99I CGWCG 2 cut(s) 164, 257
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4V TGCA 3 cut(s) 4, 99, 167
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 52, 72, 102, 173
HpyF3I CTNAG 1 cut(s) 297
Hsp92I GRCGYC 1 cut(s) 36
HspAI GCGC 3 cut(s) 36, 75, 152
KasI GGCGCC 1 cut(s) 35
Kzo9I GATC 1 cut(s) 156
LmnI GCTCC 1 cut(s) 261
LpnPI CCDG 8 cut(s) 18, 21, 45, 57, 63, 84, 153, 266
Lsp1109I GCAGC 3 cut(s) 83, 116, 119
MaeIII GTNAC 1 cut(s) 270
MalI GATC 1 cut(s) 158
MboI GATC 1 cut(s) 156
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 4 cut(s) 144, 209, 320, 366
Mly113I GGCGCC 1 cut(s) 36
MnlI CCTC 4 cut(s) 39, 83, 275, 326
MspR9I CCNGG 3 cut(s) 9, 33, 72
MvaI CCWGG 3 cut(s) 9, 33, 72
MwoI GCNNNNNNNGC 5 cut(s) 10, 52, 72, 102, 173
NarI GGCGCC 1 cut(s) 36
NdeII GATC 1 cut(s) 156
NlaIV GGNNCC 4 cut(s) 37, 55, 263, 345
NmuCI GTSAC 1 cut(s) 270
NspV TTCGAA 1 cut(s) 363
PaqCI CACCTGC 1 cut(s) 158
PasI CCCWGGG 1 cut(s) 8
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PfeI GAWTC 2 cut(s) 230, 301
PkrI GCNGC 3 cut(s) 98, 131, 134
PluTI GGCGCC 1 cut(s) 39
PpuMI RGGWCCY 1 cut(s) 343
Psp5II RGGWCCY 1 cut(s) 343
Psp6I CCWGG 3 cut(s) 7, 31, 70
PspGI CCWGG 3 cut(s) 7, 31, 70
PspN4I GGNNCC 4 cut(s) 37, 55, 263, 345
PspOMI GGGCCC 1 cut(s) 53
PspPI GGNCC 4 cut(s) 11, 53, 54, 343
PspPPI RGGWCCY 1 cut(s) 343
PstI CTGCAG 1 cut(s) 101
RsaI GTAC 2 cut(s) 204, 314
RsaNI GTAC 2 cut(s) 203, 313
SatI GCNGC 3 cut(s) 97, 130, 133
Sau3AI GATC 1 cut(s) 156
Sau96I GGNCC 4 cut(s) 11, 53, 54, 343
ScrFI CCNGG 3 cut(s) 9, 33, 72
SduI GDGCHC 1 cut(s) 57
SetI ASST 7 cut(s) 31, 94, 114, 172, 279, 298, 318
SfcI CTRYAG 1 cut(s) 97
SfoI GGCGCC 1 cut(s) 37
SfuI TTCGAA 1 cut(s) 363
SinI GGWCC 1 cut(s) 343
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 4 cut(s) 144, 209, 320, 366
SsiI CCGC 1 cut(s) 44
SspDI GGCGCC 1 cut(s) 35
StyD4I CCNGG 3 cut(s) 7, 31, 70
TaaI ACNGT 1 cut(s) 289
TaqI TCGA 2 cut(s) 318, 363
TasI AATT 4 cut(s) 144, 209, 320, 366
TfiI GAWTC 2 cut(s) 230, 301
TscAI CASTG 1 cut(s) 292
TseFI GTSAC 1 cut(s) 270
TseI GCWGC 3 cut(s) 96, 129, 132
Tsp45I GTSAC 1 cut(s) 270
TspDTI ATGAA 2 cut(s) 130, 175
TspRI CASTG 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 343
XapI RAATTY 3 cut(s) 209, 320, 366
XcmI CCANNNNNNNNNTGG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.