Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007523

Physical Location & Seq

Genomic Coordinates Forward (+)

74366316 .. 74367047

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021350

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGATGGTCCAAGATCAGCAGTTCCCAGGTCCCCACGGGCGTAACGCTCCTCGGTACGCTCCAGCCGGAGCTCGCCGCTCAAGACACCCTTGCCTAAAATGCTATTGTTGGTGCTGTTGTGGCCTTTTTGTCCTCCTATTGCTATTCGCAGCCGTCGTTGCCGCGGGCTTTGCAATAATCAATCCCAGCTATCCCAAATACGTCATTTCTGACCTCACCTCCAATGCCTTCAACTTGACAGAGGATTTCAACCTCCACGCGCGTTTTGTGGTCACGGTCGTAGTCAACAACCCTAACAAATATATCAGCATTGTCTACGGGAAGGACAGCTCCGTAGACCTCTCTTTTAGAAACGAAACGTTTAGAAACGGATCGTCATCCTTTGTCAAGCTTTGTTCTGGGATGATCCCGGAATTCAAGCAACCCACAACCAATATCACATCGATGAAAATTGACCTCAAAGGTGACTTAACCAAGGGTGACTTTACCACCGGTAAAAATAATTCCGTCGCCGCTACTAACTTCAATGACAAGGTGAAGAGCAACAGCATCCCTTTGGTCGTTGCAGTCAAGACACGTGTAAACGTGATCATTTTAGGCAAGGAAATCAATCACCTGCAGGTTGGGATTGCAGCCAACTGCACCATGGACGTTAATACTTTGTCTGCAGGCAAGGAAATAAAGATGTCAAACATCACATATTACTCGGTAGCTTTAAACTTTCATCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

244

Amino Acids

26.7

Weight (kDa)

9.27

Isoelectric Point (pI)

31.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45110 FvH4_6g45120 FvH4_6g45130
malus_domestica	MD09G1089400.v1.1 MD17G1078800.v1.1
prunus_persica	Prupe.3G236000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0162511 RchiOBHm_Chr2g0162531
rosa_laevigata	RLG00000021350 RLG00000021351
rosa_multiflora	Rmu_sc0004206.1_g000012
rosa_roxburghii	Rroxscaffold_2G00087840 Rroxscaffold_2G00087870
rosa_rugosa	Rorug02G0498200 Rorug02G0498400
rosa_samantha	Rh2AG564200 Rh2AG564300 Rh2BG576800 Rh2BG576900 Rh2CG546800 Rh2CG546900 Rh2DG586600 Rh2DG586700
rosa_wichuraiana	Rw2G046670 Rw2G046680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	624
Acc36I	ACCTGC	2 cut(s)	610, 624
AccBSI	CCGCTC	1 cut(s)	78
AccI	GTMKAC	2 cut(s)	315, 336
AccII	CGCG	3 cut(s)	164, 260, 262
AciI	CCGC	4 cut(s)	76, 162, 164, 513
AclI	AACGTT	1 cut(s)	359
AclWI	GGATC	2 cut(s)	379, 400
AcsI	RAATTY	1 cut(s)	413
AcvI	CACGTG	1 cut(s)	578
AfaI	GTAC	1 cut(s)	56
AflIII	ACRYGT	2 cut(s)	575, 577
AgeI	ACCGGT	1 cut(s)	491
AgsI	TTSAA	4 cut(s)	232, 250, 418, 526
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	5 cut(s)	71, 189, 330, 391, 713
AluI	AGCT	5 cut(s)	71, 189, 330, 391, 713
Alw21I	GWGCWC	1 cut(s)	73
AlwI	GGATC	2 cut(s)	379, 400
AoxI	GGCC	1 cut(s)	121
ApeKI	GCWGC	2 cut(s)	149, 632
ApoI	RAATTY	1 cut(s)	413
AsiGI	ACCGGT	1 cut(s)	491
AspLEI	GCGC	1 cut(s)	262
AspS9I	GGNCC	2 cut(s)	7, 29
AsuC2I	CCSGG	1 cut(s)	410
AsuHPI	GGTGA	5 cut(s)	208, 476, 491, 547, 605
AvaII	GGWCC	2 cut(s)	7, 29
BanII	GRGCYC	1 cut(s)	73
BbrPI	CACGTG	1 cut(s)	578
Bbv12I	GWGCWC	1 cut(s)	73
BbvI	GCAGC	2 cut(s)	161, 644
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	27
BclI	TGATCA	1 cut(s)	588
BcnI	CCSGG	1 cut(s)	410
BfmI	CTRYAG	2 cut(s)	617, 666
BfuAI	ACCTGC	2 cut(s)	610, 624
BisI	GCNGC	5 cut(s)	76, 150, 162, 513, 633
BlsI	GCNGC	5 cut(s)	77, 151, 163, 514, 634
Bme1390I	CCNGG	2 cut(s)	27, 410
Bme18I	GGWCC	2 cut(s)	7, 29
BmgT120I	GGNCC	2 cut(s)	7, 29
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	2 cut(s)	27, 410
BmsI	GCATC	1 cut(s)	558
BpmI	CTGGAG	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	64
BpuMI	CCSGG	1 cut(s)	410
Bsa29I	ATCGAT	1 cut(s)	443
BsaAI	YACGTR	1 cut(s)	578
BsaBI	GATNNNNATC	1 cut(s)	376
BsaJI	CCNNGG	6 cut(s)	25, 34, 50, 162, 474, 645
BsaWI	WCCGGW	1 cut(s)	491
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bse118I	RCCGGY	1 cut(s)	491
Bse8I	GATNNNNATC	1 cut(s)	376
BseBI	CCWGG	1 cut(s)	27
BseCI	ATCGAT	1 cut(s)	443
BseDI	CCNNGG	6 cut(s)	25, 34, 50, 162, 474, 645
BseGI	GGATG	4 cut(s)	377, 408, 549, 724
BseJI	GATNNNNATC	1 cut(s)	376
BseRI	GAGGAG	1 cut(s)	39
BseXI	GCAGC	2 cut(s)	161, 644
BseYI	CCCAGC	1 cut(s)	185
BsgI	GTGCAG	1 cut(s)	625
Bsh1236I	CGCG	3 cut(s)	164, 260, 262
Bsh1285I	CGRYCG	1 cut(s)	279
BshFI	GGCC	1 cut(s)	123
BshTI	ACCGGT	1 cut(s)	491
BshVI	ATCGAT	1 cut(s)	443
BsiEI	CGRYCG	1 cut(s)	279
BsiHKAI	GWGCWC	1 cut(s)	73
BsiSI	CCGG	3 cut(s)	66, 410, 492
BslFI	GGGAC	1 cut(s)	15
BsmFI	GGGAC	1 cut(s)	15
BsnI	GGCC	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp143I	GATC	4 cut(s)	13, 371, 405, 588
Bsp19I	CCATGG	1 cut(s)	645
BspACI	CCGC	4 cut(s)	76, 162, 164, 513
BspANI	GGCC	1 cut(s)	123
BspDI	ATCGAT	1 cut(s)	443
BspFNI	CGCG	3 cut(s)	164, 260, 262
BspLI	GGNNCC	1 cut(s)	31
BspMAI	CTGCAG	2 cut(s)	621, 670
BspMI	ACCTGC	2 cut(s)	610, 624
BspPI	GGATC	2 cut(s)	379, 400
BspQI	GCTCTTC	1 cut(s)	533
BsrBI	CCGCTC	1 cut(s)	78
BsrFI	RCCGGY	1 cut(s)	491
BssAI	RCCGGY	1 cut(s)	491
BssECI	CCNNGG	6 cut(s)	25, 34, 50, 162, 474, 645
BssMI	GATC	4 cut(s)	13, 371, 405, 588
BssT1I	CCWWGG	2 cut(s)	474, 645
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	277
Bst6I	CTCTTC	1 cut(s)	533
BstBAI	YACGTR	1 cut(s)	578
BstC8I	GCNNGC	3 cut(s)	73, 166, 670
BstDSI	CCRYGG	3 cut(s)	34, 162, 645
BstF5I	GGATG	4 cut(s)	377, 408, 549, 724
BstFNI	CGCG	3 cut(s)	164, 260, 262
BstHHI	GCGC	1 cut(s)	262
BstKTI	GATC	4 cut(s)	16, 374, 408, 591
BstMBI	GATC	4 cut(s)	13, 371, 405, 588
BstMCI	CGRYCG	1 cut(s)	279
BstMWI	GCNNNNNNNGC	4 cut(s)	99, 120, 158, 170
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	2 cut(s)	25, 408
BstSFI	CTRYAG	2 cut(s)	617, 666
BstUI	CGCG	3 cut(s)	164, 260, 262
BstV1I	GCAGC	2 cut(s)	161, 644
Bsu15I	ATCGAT	1 cut(s)	443
BsuRI	GGCC	1 cut(s)	123
BsuTUI	ATCGAT	1 cut(s)	443
BtgI	CCRYGG	3 cut(s)	34, 162, 645
BtsCI	GGATG	4 cut(s)	377, 408, 549, 724
BveI	ACCTGC	2 cut(s)	610, 624
Cac8I	GCNNGC	3 cut(s)	73, 166, 670
CfoI	GCGC	1 cut(s)	262
Cfr10I	RCCGGY	1 cut(s)	491
Cfr13I	GGNCC	2 cut(s)	7, 29
Cfr42I	CCGCGG	1 cut(s)	165
ClaI	ATCGAT	1 cut(s)	443
Csp6I	GTAC	1 cut(s)	55
CspAI	ACCGGT	1 cut(s)	491
CviAII	CATG	1 cut(s)	646
CviQI	GTAC	1 cut(s)	55
DpnI	GATC	4 cut(s)	15, 373, 407, 590
DpnII	GATC	4 cut(s)	13, 371, 405, 588
DraI	TTTAAA	1 cut(s)	717
Eam1104I	CTCTTC	1 cut(s)	533
EarI	CTCTTC	1 cut(s)	533
Ecl136II	GAGCTC	1 cut(s)	71
Eco130I	CCWWGG	2 cut(s)	474, 645
Eco24I	GRGCYC	1 cut(s)	73
Eco47I	GGWCC	2 cut(s)	7, 29
Eco53kI	GAGCTC	1 cut(s)	71
Eco72I	CACGTG	1 cut(s)	578
EcoICRI	GAGCTC	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	29
EcoRI	GAATTC	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	25
EcoT14I	CCWWGG	2 cut(s)	474, 645
EcoT38I	GRGCYC	1 cut(s)	73
ErhI	CCWWGG	2 cut(s)	474, 645
FaeI	CATG	1 cut(s)	649
FaiI	YATR	3 cut(s)	303, 647, 700
FalI	AAGNNNNNCTT	4 cut(s)	73, 105, 467, 499
FaqI	GGGAC	1 cut(s)	15
FatI	CATG	1 cut(s)	645
FauI	CCCGC	1 cut(s)	157
FbaI	TGATCA	1 cut(s)	588
FblI	GTMKAC	2 cut(s)	315, 336
Fnu4HI	GCNGC	5 cut(s)	76, 150, 162, 513, 633
FokI	GGATG	4 cut(s)	364, 415, 536, 711
FriOI	GRGCYC	1 cut(s)	73
Fsp4HI	GCNGC	5 cut(s)	76, 150, 162, 513, 633
GlaI	GCGC	1 cut(s)	261
GluI	GCNGC	5 cut(s)	76, 150, 162, 513, 633
GsaI	CCCAGC	1 cut(s)	189
GsuI	CTGGAG	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	3 cut(s)	66, 410, 492
HhaI	GCGC	1 cut(s)	262
Hin1II	CATG	1 cut(s)	649
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HindIII	AAGCTT	1 cut(s)	389
HpaII	CCGG	3 cut(s)	66, 410, 492
HphI	GGTGA	5 cut(s)	208, 476, 491, 547, 605
Hpy166II	GTNNAC	4 cut(s)	286, 316, 337, 583
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	2 cut(s)	81, 571
Hpy8I	GTNNAC	4 cut(s)	286, 316, 337, 583
Hpy99I	CGWCG	2 cut(s)	158, 512
HpyAV	CCTTC	2 cut(s)	238, 316
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4IV	ACGT	5 cut(s)	201, 359, 577, 585, 651
HpyCH4V	TGCA	6 cut(s)	173, 566, 619, 632, 642, 668
HpyF10VI	GCNNNNNNNGC	4 cut(s)	99, 120, 158, 170
HpySE526I	ACGT	5 cut(s)	201, 359, 577, 585, 651
Hsp92II	CATG	1 cut(s)	649
HspAI	GCGC	1 cut(s)	260
Ksp22I	TGATCA	1 cut(s)	588
KspI	CCGCGG	1 cut(s)	165
Kzo9I	GATC	4 cut(s)	13, 371, 405, 588
LguI	GCTCTTC	1 cut(s)	533
LmnI	GCTCC	4 cut(s)	52, 64, 68, 335
Lsp1109I	GCAGC	2 cut(s)	161, 644
LweI	GCATC	1 cut(s)	558
MaeII	ACGT	5 cut(s)	201, 359, 577, 585, 651
MaeIII	GTNAC	4 cut(s)	41, 271, 464, 479
MalI	GATC	4 cut(s)	15, 373, 407, 590
MbiI	CCGCTC	1 cut(s)	78
MboI	GATC	4 cut(s)	13, 371, 405, 588
MboII	GAAGA	1 cut(s)	550
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	3 cut(s)	413, 450, 502
MnlI	CCTC	8 cut(s)	60, 143, 224, 229, 235, 263, 350, 467
MseI	TTAA	3 cut(s)	470, 654, 716
MslI	CAYNNNNRTG	1 cut(s)	443
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	3 cut(s)	66, 410, 492
MspR9I	CCNGG	2 cut(s)	27, 410
MvaI	CCWGG	1 cut(s)	27
MvnI	CGCG	3 cut(s)	164, 260, 262
MwoI	GCNNNNNNNGC	4 cut(s)	99, 120, 158, 170
NciI	CCSGG	1 cut(s)	410
NcoI	CCATGG	1 cut(s)	645
NdeII	GATC	4 cut(s)	13, 371, 405, 588
NlaIII	CATG	1 cut(s)	649
NlaIV	GGNNCC	1 cut(s)	31
NmuCI	GTSAC	3 cut(s)	271, 464, 479
PaqCI	CACCTGC	1 cut(s)	624
PciSI	GCTCTTC	1 cut(s)	533
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PfoI	TCCNGGA	1 cut(s)	408
PinAI	ACCGGT	1 cut(s)	491
PkrI	GCNGC	5 cut(s)	77, 151, 163, 514, 634
PmaCI	CACGTG	1 cut(s)	578
PmlI	CACGTG	1 cut(s)	578
Ppu21I	YACGTR	1 cut(s)	578
PpuMI	RGGWCCY	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	73
Psp1406I	AACGTT	1 cut(s)	359
Psp5II	RGGWCCY	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	25
PspCI	CACGTG	1 cut(s)	578
PspFI	CCCAGC	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	1 cut(s)	31
PspPI	GGNCC	2 cut(s)	7, 29
PspPPI	RGGWCCY	1 cut(s)	29
PstI	CTGCAG	2 cut(s)	621, 670
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
RseI	CAYNNNNRTG	1 cut(s)	443
SacI	GAGCTC	1 cut(s)	73
SacII	CCGCGG	1 cut(s)	165
SapI	GCTCTTC	1 cut(s)	533
SaqAI	TTAA	3 cut(s)	470, 654, 716
SatI	GCNGC	5 cut(s)	76, 150, 162, 513, 633
Sau3AI	GATC	4 cut(s)	13, 371, 405, 588
Sau96I	GGNCC	2 cut(s)	7, 29
SbfI	CCTGCAGG	1 cut(s)	621
ScrFI	CCNGG	2 cut(s)	27, 410
SdaI	CCTGCAGG	1 cut(s)	621
SduI	GDGCHC	1 cut(s)	73
SfaNI	GCATC	1 cut(s)	558
SfcI	CTRYAG	2 cut(s)	617, 666
Sfr303I	CCGCGG	1 cut(s)	165
SgrBI	CCGCGG	1 cut(s)	165
SinI	GGWCC	2 cut(s)	7, 29
SmiMI	CAYNNNNRTG	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
Sse8387I	CCTGCAGG	1 cut(s)	621
Sse9I	AATT	3 cut(s)	413, 450, 502
SsiI	CCGC	4 cut(s)	76, 162, 164, 513
SstI	GAGCTC	1 cut(s)	73
StyD4I	CCNGG	2 cut(s)	25, 408
StyI	CCWWGG	2 cut(s)	474, 645
TaaI	ACNGT	1 cut(s)	277
TaiI	ACGT	5 cut(s)	204, 362, 580, 588, 654
TaqI	TCGA	1 cut(s)	443
TasI	AATT	3 cut(s)	413, 450, 502
TauI	GCSGC	3 cut(s)	78, 164, 515
Tru1I	TTAA	3 cut(s)	470, 654, 716
Tru9I	TTAA	3 cut(s)	470, 654, 716
TseFI	GTSAC	3 cut(s)	271, 464, 479
TseI	GCWGC	2 cut(s)	149, 632
Tsp45I	GTSAC	3 cut(s)	271, 464, 479
TspDTI	ATGAA	2 cut(s)	461, 713
TspGWI	ACGGA	3 cut(s)	322, 384, 496
VpaK11BI	GGWCC	2 cut(s)	7, 29
XapI	RAATTY	1 cut(s)	413
XcmI	CCANNNNNNNNNTGG	1 cut(s)	643
XmiI	GTMKAC	2 cut(s)	315, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.