Rroxscaffold_2G00087870

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0007523
Physical Location & Seq
Reverse (-)
9936028 .. 9936759
732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00087870.1

Sequence Viewer

Length: 732 bp
ATGATGGTCCAAGATCAGCAGTTCCCAGGTCCCCACGGGCGTAACGCTCCTCGGTACGCTCCTGCCGGAGCTCGCCGCTCAAGACATCCTTGCCTAAAATGCTATTGTTGGTGCTGTTGTGGCCTTTTTGTCCTCCTATTGCTATTCGCAGCCGTCGTTGCCGCGGGCTTTGCAATAATCAATCCCAGCTATCCCAAATTCGTCATTTCTGACCTCACCTCCATTGCCTTCAACTTGACAGAGGATTTCAACCTCCACGCTCGCTTTGTGGTCACGGTCGTAGCCAACAACCCTAACAAATATATCAGCATTGTCTACGGGAAGGACAGCTCCGTAGACCTCTCTTTTAGAAACGAAACGTTTAGAAACGGATCGTCATCCTTTGTCAAGCTTTGTTCTGGGATGATCCCGGAGTTCAAGCAACCCACAACCAATATCACATCGATGAAAATTGACCTCAAAGGTGACTTAACCAAGGGTGACTTTACCACCGGTAAAAATAATTCCGTCGCCGCTACTAACTTCAATGACAAGGTGAAGGGCAGCAACATCCCTTTGGTCGTTGCAGTCAAGACACGCGTAAACGTGATCATTTTAGGCAAGGAAATCAATCACCTGCAGGTTGGGATTGCAGCCAACTGCTCCATGGACGTTAATACTTTGTCTGCAGGCAAGGAAATAAAGATGTCAAACATCACATATTACTCGGTTGCTTTAAATTTTCATCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

243

Amino Acids

26.61

Weight (kDa)

9.29

Isoelectric Point (pI)

31.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 624
Acc36I ACCTGC 2 cut(s) 610, 624
AccBSI CCGCTC 1 cut(s) 78
AccI GTMKAC 2 cut(s) 315, 336
AccII CGCG 2 cut(s) 164, 579
AciI CCGC 4 cut(s) 76, 162, 164, 513
AclI AACGTT 1 cut(s) 359
AclWI GGATC 2 cut(s) 379, 400
AcsI RAATTY 2 cut(s) 197, 718
AfaI GTAC 1 cut(s) 56
AflIII ACRYGT 1 cut(s) 577
AgeI ACCGGT 1 cut(s) 491
AgsI TTSAA 4 cut(s) 232, 250, 418, 526
AjnI CCWGG 1 cut(s) 25
AluBI AGCT 4 cut(s) 71, 189, 330, 391
AluI AGCT 4 cut(s) 71, 189, 330, 391
Alw21I GWGCWC 1 cut(s) 73
AlwI GGATC 2 cut(s) 379, 400
AoxI GGCC 1 cut(s) 121
ApeKI GCWGC 3 cut(s) 149, 543, 632
ApoI RAATTY 2 cut(s) 197, 718
AsiGI ACCGGT 1 cut(s) 491
AspS9I GGNCC 2 cut(s) 7, 29
AsuC2I CCSGG 1 cut(s) 410
AsuHPI GGTGA 5 cut(s) 208, 476, 491, 547, 605
AvaII GGWCC 2 cut(s) 7, 29
BanII GRGCYC 1 cut(s) 73
Bbv12I GWGCWC 1 cut(s) 73
BbvI GCAGC 3 cut(s) 161, 555, 644
BceAI ACGGC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 27
BclI TGATCA 1 cut(s) 588
BcnI CCSGG 1 cut(s) 410
BfmI CTRYAG 2 cut(s) 617, 666
BfuAI ACCTGC 2 cut(s) 610, 624
BisI GCNGC 6 cut(s) 76, 150, 162, 513, 544, 633
BlsI GCNGC 6 cut(s) 77, 151, 163, 514, 545, 634
Bme1390I CCNGG 2 cut(s) 27, 410
Bme18I GGWCC 2 cut(s) 7, 29
BmgT120I GGNCC 2 cut(s) 7, 29
BmiI GGNNCC 1 cut(s) 31
BmrFI CCNGG 2 cut(s) 27, 410
BpuEI CTTGAG 1 cut(s) 64
BpuMI CCSGG 1 cut(s) 410
Bsa29I ATCGAT 1 cut(s) 443
BsaBI GATNNNNATC 1 cut(s) 376
BsaJI CCNNGG 6 cut(s) 25, 34, 50, 162, 474, 645
BsaWI WCCGGW 1 cut(s) 491
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bse118I RCCGGY 1 cut(s) 491
Bse3DI GCAATG 1 cut(s) 222
Bse8I GATNNNNATC 1 cut(s) 376
BseBI CCWGG 1 cut(s) 27
BseCI ATCGAT 1 cut(s) 443
BseDI CCNNGG 6 cut(s) 25, 34, 50, 162, 474, 645
BseGI GGATG 5 cut(s) 85, 377, 408, 549, 724
BseJI GATNNNNATC 1 cut(s) 376
BseMI GCAATG 1 cut(s) 222
BseRI GAGGAG 1 cut(s) 39
BseXI GCAGC 3 cut(s) 161, 555, 644
BseYI CCCAGC 1 cut(s) 185
Bsh1236I CGCG 2 cut(s) 164, 579
Bsh1285I CGRYCG 1 cut(s) 279
BshFI GGCC 1 cut(s) 123
BshTI ACCGGT 1 cut(s) 491
BshVI ATCGAT 1 cut(s) 443
BsiEI CGRYCG 1 cut(s) 279
BsiHKAI GWGCWC 1 cut(s) 73
BsiSI CCGG 3 cut(s) 66, 410, 492
BslFI GGGAC 1 cut(s) 15
BsmFI GGGAC 1 cut(s) 15
BsnI GGCC 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 4 cut(s) 13, 371, 405, 588
Bsp19I CCATGG 1 cut(s) 645
BspACI CCGC 4 cut(s) 76, 162, 164, 513
BspANI GGCC 1 cut(s) 123
BspDI ATCGAT 1 cut(s) 443
BspFNI CGCG 2 cut(s) 164, 579
BspLI GGNNCC 1 cut(s) 31
BspMAI CTGCAG 2 cut(s) 621, 670
BspMI ACCTGC 2 cut(s) 610, 624
BspPI GGATC 2 cut(s) 379, 400
BsrBI CCGCTC 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 222
BsrFI RCCGGY 1 cut(s) 491
BssAI RCCGGY 1 cut(s) 491
BssECI CCNNGG 6 cut(s) 25, 34, 50, 162, 474, 645
BssMI GATC 4 cut(s) 13, 371, 405, 588
BssT1I CCWWGG 2 cut(s) 474, 645
Bst2UI CCWGG 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 277
BstC8I GCNNGC 4 cut(s) 73, 166, 262, 670
BstDSI CCRYGG 3 cut(s) 34, 162, 645
BstF5I GGATG 5 cut(s) 85, 377, 408, 549, 724
BstFNI CGCG 2 cut(s) 164, 579
BstKTI GATC 4 cut(s) 16, 374, 408, 591
BstMBI GATC 4 cut(s) 13, 371, 405, 588
BstMCI CGRYCG 1 cut(s) 279
BstMWI GCNNNNNNNGC 4 cut(s) 99, 120, 158, 170
BstNI CCWGG 1 cut(s) 27
BstSCI CCNGG 2 cut(s) 25, 408
BstSFI CTRYAG 2 cut(s) 617, 666
BstUI CGCG 2 cut(s) 164, 579
BstV1I GCAGC 3 cut(s) 161, 555, 644
Bsu15I ATCGAT 1 cut(s) 443
BsuRI GGCC 1 cut(s) 123
BsuTUI ATCGAT 1 cut(s) 443
BtgI CCRYGG 3 cut(s) 34, 162, 645
BtsCI GGATG 5 cut(s) 85, 377, 408, 549, 724
BveI ACCTGC 2 cut(s) 610, 624
Cac8I GCNNGC 4 cut(s) 73, 166, 262, 670
Cfr10I RCCGGY 1 cut(s) 491
Cfr13I GGNCC 2 cut(s) 7, 29
Cfr42I CCGCGG 1 cut(s) 165
ClaI ATCGAT 1 cut(s) 443
Csp6I GTAC 1 cut(s) 55
CspAI ACCGGT 1 cut(s) 491
CviAII CATG 1 cut(s) 646
CviJI RGCY 9 cut(s) 71, 123, 152, 168, 189, 284, 330, 391, 635
CviKI_1 RGCY 9 cut(s) 71, 123, 152, 168, 189, 284, 330, 391, 635
CviQI GTAC 1 cut(s) 55
DpnI GATC 4 cut(s) 15, 373, 407, 590
DpnII GATC 4 cut(s) 13, 371, 405, 588
DraI TTTAAA 1 cut(s) 717
Ecl136II GAGCTC 1 cut(s) 71
Eco130I CCWWGG 2 cut(s) 474, 645
Eco24I GRGCYC 1 cut(s) 73
Eco47I GGWCC 2 cut(s) 7, 29
Eco53kI GAGCTC 1 cut(s) 71
EcoICRI GAGCTC 1 cut(s) 71
EcoO109I RGGNCCY 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 25
EcoT14I CCWWGG 2 cut(s) 474, 645
EcoT38I GRGCYC 1 cut(s) 73
ErhI CCWWGG 2 cut(s) 474, 645
FaeI CATG 1 cut(s) 649
FaiI YATR 3 cut(s) 303, 647, 700
FalI AAGNNNNNCTT 4 cut(s) 73, 105, 467, 499
FaqI GGGAC 1 cut(s) 15
FatI CATG 1 cut(s) 645
FauI CCCGC 1 cut(s) 157
FbaI TGATCA 1 cut(s) 588
FblI GTMKAC 2 cut(s) 315, 336
Fnu4HI GCNGC 6 cut(s) 76, 150, 162, 513, 544, 633
FokI GGATG 5 cut(s) 72, 364, 415, 536, 711
FriOI GRGCYC 1 cut(s) 73
Fsp4HI GCNGC 6 cut(s) 76, 150, 162, 513, 544, 633
GluI GCNGC 6 cut(s) 76, 150, 162, 513, 544, 633
GsaI CCCAGC 1 cut(s) 189
HaeIII GGCC 1 cut(s) 123
HapII CCGG 3 cut(s) 66, 410, 492
Hin1II CATG 1 cut(s) 649
HindIII AAGCTT 1 cut(s) 389
HpaII CCGG 3 cut(s) 66, 410, 492
HphI GGTGA 5 cut(s) 208, 476, 491, 547, 605
Hpy166II GTNNAC 3 cut(s) 316, 337, 583
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 2 cut(s) 81, 571
Hpy8I GTNNAC 3 cut(s) 316, 337, 583
Hpy99I CGWCG 2 cut(s) 158, 512
HpyAV CCTTC 3 cut(s) 238, 316, 532
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4IV ACGT 3 cut(s) 359, 585, 651
HpyCH4V TGCA 5 cut(s) 173, 566, 619, 632, 668
HpyF10VI GCNNNNNNNGC 4 cut(s) 99, 120, 158, 170
HpySE526I ACGT 3 cut(s) 359, 585, 651
Hsp92II CATG 1 cut(s) 649
Ksp22I TGATCA 1 cut(s) 588
KspI CCGCGG 1 cut(s) 165
Kzo9I GATC 4 cut(s) 13, 371, 405, 588
LmnI GCTCC 5 cut(s) 52, 64, 68, 335, 647
Lsp1109I GCAGC 3 cut(s) 161, 555, 644
MaeII ACGT 3 cut(s) 359, 585, 651
MaeIII GTNAC 4 cut(s) 41, 271, 464, 479
MalI GATC 4 cut(s) 15, 373, 407, 590
MbiI CCGCTC 1 cut(s) 78
MboI GATC 4 cut(s) 13, 371, 405, 588
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 4 cut(s) 197, 450, 502, 718
MluI ACGCGT 1 cut(s) 577
MnlI CCTC 8 cut(s) 60, 143, 224, 229, 235, 263, 350, 467
MseI TTAA 3 cut(s) 470, 654, 716
MslI CAYNNNNRTG 1 cut(s) 443
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 3 cut(s) 66, 410, 492
MspR9I CCNGG 2 cut(s) 27, 410
MvaI CCWGG 1 cut(s) 27
MvnI CGCG 2 cut(s) 164, 579
MwoI GCNNNNNNNGC 4 cut(s) 99, 120, 158, 170
NciI CCSGG 1 cut(s) 410
NcoI CCATGG 1 cut(s) 645
NdeII GATC 4 cut(s) 13, 371, 405, 588
NlaIII CATG 1 cut(s) 649
NlaIV GGNNCC 1 cut(s) 31
NmuCI GTSAC 3 cut(s) 271, 464, 479
PaqCI CACCTGC 1 cut(s) 624
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PfoI TCCNGGA 1 cut(s) 408
PinAI ACCGGT 1 cut(s) 491
PkrI GCNGC 6 cut(s) 77, 151, 163, 514, 545, 634
PpuMI RGGWCCY 1 cut(s) 29
Psp124BI GAGCTC 1 cut(s) 73
Psp1406I AACGTT 1 cut(s) 359
Psp5II RGGWCCY 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 25
PspFI CCCAGC 1 cut(s) 185
PspGI CCWGG 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 31
PspPI GGNCC 2 cut(s) 7, 29
PspPPI RGGWCCY 1 cut(s) 29
PstI CTGCAG 2 cut(s) 621, 670
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
RseI CAYNNNNRTG 1 cut(s) 443
SacI GAGCTC 1 cut(s) 73
SacII CCGCGG 1 cut(s) 165
SaqAI TTAA 3 cut(s) 470, 654, 716
SatI GCNGC 6 cut(s) 76, 150, 162, 513, 544, 633
Sau3AI GATC 4 cut(s) 13, 371, 405, 588
Sau96I GGNCC 2 cut(s) 7, 29
SbfI CCTGCAGG 1 cut(s) 621
ScrFI CCNGG 2 cut(s) 27, 410
SdaI CCTGCAGG 1 cut(s) 621
SduI GDGCHC 1 cut(s) 73
SfcI CTRYAG 2 cut(s) 617, 666
Sfr303I CCGCGG 1 cut(s) 165
SgrBI CCGCGG 1 cut(s) 165
SinI GGWCC 2 cut(s) 7, 29
SmiMI CAYNNNNRTG 1 cut(s) 443
SmlI CTYRAG 1 cut(s) 79
SmoI CTYRAG 1 cut(s) 79
Sse8387I CCTGCAGG 1 cut(s) 621
Sse9I AATT 4 cut(s) 197, 450, 502, 718
SsiI CCGC 4 cut(s) 76, 162, 164, 513
SstI GAGCTC 1 cut(s) 73
StyD4I CCNGG 2 cut(s) 25, 408
StyI CCWWGG 2 cut(s) 474, 645
TaaI ACNGT 1 cut(s) 277
TaiI ACGT 3 cut(s) 362, 588, 654
TaqI TCGA 1 cut(s) 443
TasI AATT 4 cut(s) 197, 450, 502, 718
TauI GCSGC 3 cut(s) 78, 164, 515
Tru1I TTAA 3 cut(s) 470, 654, 716
Tru9I TTAA 3 cut(s) 470, 654, 716
TseFI GTSAC 3 cut(s) 271, 464, 479
TseI GCWGC 3 cut(s) 149, 543, 632
Tsp45I GTSAC 3 cut(s) 271, 464, 479
TspDTI ATGAA 2 cut(s) 461, 713
TspGWI ACGGA 3 cut(s) 322, 384, 496
VpaK11BI GGWCC 2 cut(s) 7, 29
XapI RAATTY 2 cut(s) 197, 718
XcmI CCANNNNNNNNNTGG 1 cut(s) 643
XmiI GTMKAC 2 cut(s) 315, 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.