Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007523

Physical Location & Seq

Genomic Coordinates Forward (+)

34627771 .. 34629103

Gene Structure 1333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g45110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGTTCATGATCAGCAGTTCCCAGGTCCCCACGGCCGTAACGCTCCTCGATATGCTCCAGCCGGAGCTCGCCGCTCAAGACATCCTTGCCTGAAATGCTACGGTTGGTTCTGTTGTGGCCTCTTTGCCCTTGCATTGATATTCGCAGCCGTTGTGGCCGGGTTTTGGGCAATCGTAAATCCCAGCCTTCCCAAGTACACAGTTTTTGGCATCACCTCCAATGCCTACAACTTCACAAACGACTTCAAGTTCCACGGTCGCTTTGTAGTCAATCTCGGATCCAACAACCTTAACAAATATATCACCATTGTCTACGAGAAGGACAGCACTGTAGACCTCCTATTTAGGGACGGACGCTCAAACTTTGTCAAGCTTTGTTCTGGGATGTTCCCGGAGTTCAAGCAACCTACAGCTAATATCACATCGATGAATATCGACCTCAAAGGAGACTTAACCAAGGGTGACTTTGGCGGTTCCGCGAATACGTTTAATGAGAAGGTGAAGAGCAACAGCATCCCTTTAGTCGTTGCAGTCAAGACACACGGAGAGGCAATCATTTTAGGGCATAACCTCAAGGTTGAGCTTGCGGCCAACTGCTCCATGGACGTTGATAGTTTGTCCGCAGGCAAGGAAGGCAAGGAGCAGCTAAAGATGTCAAACATGATATGTGAAGGGACTAATGTAAAATATTTTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

233

Amino Acids

25.55

Weight (kDa)

9.04

Isoelectric Point (pI)

25.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45110 FvH4_6g45120 FvH4_6g45130
malus_domestica	MD09G1089400.v1.1 MD17G1078800.v1.1
prunus_persica	Prupe.3G236000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0162511 RchiOBHm_Chr2g0162531
rosa_laevigata	RLG00000021350 RLG00000021351
rosa_multiflora	Rmu_sc0004206.1_g000012
rosa_roxburghii	Rroxscaffold_2G00087840 Rroxscaffold_2G00087870
rosa_rugosa	Rorug02G0498200 Rorug02G0498400
rosa_samantha	Rh2AG564200 Rh2AG564300 Rh2BG576800 Rh2BG576900 Rh2CG546800 Rh2CG546900 Rh2DG586600 Rh2DG586700
rosa_wichuraiana	Rw2G046670 Rw2G046680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	75
AccI	GTMKAC	2 cut(s)	312, 333
AccII	CGCG	1 cut(s)	479
AciI	CCGC	5 cut(s)	73, 471, 477, 587, 621
AclWI	GGATC	2 cut(s)	273, 286
AcoI	YGGCCR	3 cut(s)	34, 156, 588
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	2 cut(s)	165, 346
AgsI	TTSAA	2 cut(s)	247, 400
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	5 cut(s)	68, 373, 413, 583, 646
AluI	AGCT	5 cut(s)	68, 373, 413, 583, 646
Alw21I	GWGCWC	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	441
AlwI	GGATC	2 cut(s)	273, 286
AoxI	GGCC	4 cut(s)	34, 118, 156, 588
ApeKI	GCWGC	2 cut(s)	146, 643
AspS9I	GGNCC	1 cut(s)	26
AsuC2I	CCSGG	2 cut(s)	160, 392
AsuHPI	GGTGA	4 cut(s)	205, 295, 473, 511
AvaII	GGWCC	1 cut(s)	26
BamHI	GGATCC	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	70
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	158, 655
BceAI	ACGGC	3 cut(s)	21, 49, 134
BciT130I	CCWGG	1 cut(s)	24
BclI	TGATCA	1 cut(s)	10
BcnI	CCSGG	2 cut(s)	160, 392
BcoDI	GTCTC	1 cut(s)	441
BfmI	CTRYAG	2 cut(s)	330, 408
BglI	GCCNNNNNGGC	1 cut(s)	155
BisI	GCNGC	4 cut(s)	73, 147, 588, 644
BlsI	GCNGC	4 cut(s)	74, 148, 589, 645
Bme1390I	CCNGG	3 cut(s)	24, 160, 392
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	3 cut(s)	28, 280, 475
BmrFI	CCNGG	3 cut(s)	24, 160, 392
BmsI	GCATC	2 cut(s)	219, 522
BpmI	CTGGAG	1 cut(s)	42
BpuEI	CTTGAG	2 cut(s)	61, 557
BpuMI	CCSGG	2 cut(s)	160, 392
Bsa29I	ATCGAT	1 cut(s)	425
BsaBI	GATNNNNATC	1 cut(s)	431
BsaJI	CCNNGG	5 cut(s)	22, 31, 253, 456, 600
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 346
Bse8I	GATNNNNATC	1 cut(s)	431
BseBI	CCWGG	1 cut(s)	24
BseCI	ATCGAT	1 cut(s)	425
BseDI	CCNNGG	5 cut(s)	22, 31, 253, 456, 600
BseGI	GGATG	3 cut(s)	82, 390, 513
BseJI	GATNNNNATC	1 cut(s)	431
BseLI	CCNNNNNNNGG	2 cut(s)	165, 346
BseRI	GAGGAG	1 cut(s)	36
BseX3I	CGGCCG	1 cut(s)	34
BseXI	GCAGC	2 cut(s)	158, 655
BseYI	CCCAGC	1 cut(s)	182
Bsh1236I	CGCG	1 cut(s)	479
Bsh1285I	CGRYCG	2 cut(s)	37, 259
BshFI	GGCC	4 cut(s)	36, 120, 158, 590
BshVI	ATCGAT	1 cut(s)	425
BsiEI	CGRYCG	2 cut(s)	37, 259
BsiHKAI	GWGCWC	1 cut(s)	70
BsiSI	CCGG	3 cut(s)	63, 159, 392
BslFI	GGGAC	3 cut(s)	12, 362, 688
BslI	CCNNNNNNNGG	2 cut(s)	165, 346
BsmAI	GTCTC	1 cut(s)	441
BsmFI	GGGAC	3 cut(s)	12, 362, 688
BsnI	GGCC	4 cut(s)	36, 120, 158, 590
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	10, 278
Bsp19I	CCATGG	1 cut(s)	600
BspACI	CCGC	5 cut(s)	73, 471, 477, 587, 621
BspANI	GGCC	4 cut(s)	36, 120, 158, 590
BspDI	ATCGAT	1 cut(s)	425
BspFNI	CGCG	1 cut(s)	479
BspHI	TCATGA	1 cut(s)	7
BspLI	GGNNCC	3 cut(s)	28, 280, 475
BspPI	GGATC	2 cut(s)	273, 286
BspQI	GCTCTTC	1 cut(s)	497
BsrBI	CCGCTC	1 cut(s)	75
BssECI	CCNNGG	5 cut(s)	22, 31, 253, 456, 600
BssMI	GATC	2 cut(s)	10, 278
BssT1I	CCWWGG	2 cut(s)	456, 600
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	4 cut(s)	104, 202, 257, 331
Bst6I	CTCTTC	1 cut(s)	497
BstC8I	GCNNGC	3 cut(s)	70, 585, 625
BstDSI	CCRYGG	3 cut(s)	31, 253, 600
BstF5I	GGATG	3 cut(s)	82, 390, 513
BstFNI	CGCG	1 cut(s)	479
BstKTI	GATC	2 cut(s)	13, 281
BstMAI	GTCTC	1 cut(s)	441
BstMBI	GATC	2 cut(s)	10, 278
BstMCI	CGRYCG	2 cut(s)	37, 259
BstMWI	GCNNNNNNNGC	3 cut(s)	96, 155, 633
BstNI	CCWGG	1 cut(s)	24
BstSCI	CCNGG	3 cut(s)	22, 158, 390
BstSFI	CTRYAG	2 cut(s)	330, 408
BstUI	CGCG	1 cut(s)	479
BstV1I	GCAGC	2 cut(s)	158, 655
BstX2I	RGATCY	1 cut(s)	278
BstYI	RGATCY	1 cut(s)	278
BstZI	CGGCCG	1 cut(s)	34
Bsu15I	ATCGAT	1 cut(s)	425
BsuRI	GGCC	4 cut(s)	36, 120, 158, 590
BsuTUI	ATCGAT	1 cut(s)	425
BtgI	CCRYGG	3 cut(s)	31, 253, 600
BtsCI	GGATG	3 cut(s)	82, 390, 513
BtsIMutI	CAGTG	1 cut(s)	327
Cac8I	GCNNGC	3 cut(s)	70, 585, 625
CciI	TCATGA	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	26
ClaI	ATCGAT	1 cut(s)	425
CseI	GACGC	1 cut(s)	363
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	3 cut(s)	8, 601, 661
CviQI	GTAC	1 cut(s)	196
DpnI	GATC	2 cut(s)	12, 280
DpnII	GATC	2 cut(s)	10, 278
EaeI	YGGCCR	3 cut(s)	34, 156, 588
EagI	CGGCCG	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	497
EarI	CTCTTC	1 cut(s)	497
Ecl136II	GAGCTC	1 cut(s)	68
EclXI	CGGCCG	1 cut(s)	34
Eco130I	CCWWGG	2 cut(s)	456, 600
Eco24I	GRGCYC	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	26
Eco52I	CGGCCG	1 cut(s)	34
Eco53kI	GAGCTC	1 cut(s)	68
EcoICRI	GAGCTC	1 cut(s)	68
EcoO109I	RGGNCCY	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	2 cut(s)	456, 600
EcoT38I	GRGCYC	1 cut(s)	70
ErhI	CCWWGG	2 cut(s)	456, 600
FaeI	CATG	3 cut(s)	11, 604, 664
FaiI	YATR	9 cut(s)	9, 54, 300, 567, 602, 662, 667, 695, 697
FalI	AAGNNNNNCTT	4 cut(s)	70, 102, 449, 481
FaqI	GGGAC	3 cut(s)	12, 362, 688
FatI	CATG	3 cut(s)	7, 600, 660
FbaI	TGATCA	1 cut(s)	10
FblI	GTMKAC	2 cut(s)	312, 333
Fnu4HI	GCNGC	4 cut(s)	73, 147, 588, 644
FokI	GGATG	3 cut(s)	69, 397, 500
FriOI	GRGCYC	1 cut(s)	70
Fsp4HI	GCNGC	4 cut(s)	73, 147, 588, 644
GluI	GCNGC	4 cut(s)	73, 147, 588, 644
GsaI	CCCAGC	1 cut(s)	186
GsuI	CTGGAG	1 cut(s)	42
HaeIII	GGCC	4 cut(s)	36, 120, 158, 590
HapII	CCGG	3 cut(s)	63, 159, 392
HgaI	GACGC	1 cut(s)	363
Hin1II	CATG	3 cut(s)	11, 604, 664
HindIII	AAGCTT	1 cut(s)	371
HpaII	CCGG	3 cut(s)	63, 159, 392
HphI	GGTGA	4 cut(s)	205, 295, 473, 511
Hpy166II	GTNNAC	3 cut(s)	198, 313, 334
Hpy188I	TCNGA	1 cut(s)	278
Hpy188III	TCNNGA	3 cut(s)	8, 78, 535
Hpy8I	GTNNAC	3 cut(s)	198, 313, 334
HpyAV	CCTTC	5 cut(s)	197, 313, 490, 626, 665
HpyCH4III	ACNGT	4 cut(s)	104, 202, 257, 331
HpyCH4IV	ACGT	2 cut(s)	485, 606
HpyCH4V	TGCA	2 cut(s)	134, 530
HpyF10VI	GCNNNNNNNGC	3 cut(s)	96, 155, 633
HpySE526I	ACGT	2 cut(s)	485, 606
Hsp92II	CATG	3 cut(s)	11, 604, 664
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	2 cut(s)	10, 278
LguI	GCTCTTC	1 cut(s)	497
LmnI	GCTCC	5 cut(s)	49, 61, 65, 602, 640
Lsp1109I	GCAGC	2 cut(s)	158, 655
LweI	GCATC	2 cut(s)	219, 522
MaeII	ACGT	2 cut(s)	485, 606
MaeIII	GTNAC	2 cut(s)	38, 461
MalI	GATC	2 cut(s)	12, 280
MbiI	CCGCTC	1 cut(s)	75
MboI	GATC	2 cut(s)	10, 278
MboII	GAAGA	1 cut(s)	514
MflI	RGATCY	1 cut(s)	278
MhlI	GDGCHC	1 cut(s)	70
MmeI	TCCRAC	1 cut(s)	306
MnlI	CCTC	7 cut(s)	57, 131, 226, 347, 449, 541, 581
MseI	TTAA	3 cut(s)	291, 452, 489
MslI	CAYNNNNRTG	1 cut(s)	425
MspI	CCGG	3 cut(s)	63, 159, 392
MspR9I	CCNGG	3 cut(s)	24, 160, 392
MvaI	CCWGG	1 cut(s)	24
MvnI	CGCG	1 cut(s)	479
MwoI	GCNNNNNNNGC	3 cut(s)	96, 155, 633
NciI	CCSGG	2 cut(s)	160, 392
NcoI	CCATGG	1 cut(s)	600
NdeII	GATC	2 cut(s)	10, 278
NlaIII	CATG	3 cut(s)	11, 604, 664
NlaIV	GGNNCC	3 cut(s)	28, 280, 475
NmuCI	GTSAC	1 cut(s)	461
PagI	TCATGA	1 cut(s)	7
PciSI	GCTCTTC	1 cut(s)	497
PfoI	TCCNGGA	1 cut(s)	390
PkrI	GCNGC	4 cut(s)	74, 148, 589, 645
PpuMI	RGGWCCY	1 cut(s)	26
Psp124BI	GAGCTC	1 cut(s)	70
Psp5II	RGGWCCY	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	22
PspFI	CCCAGC	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	3 cut(s)	28, 280, 475
PspPI	GGNCC	1 cut(s)	26
PspPPI	RGGWCCY	1 cut(s)	26
PsuI	RGATCY	1 cut(s)	278
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
RseI	CAYNNNNRTG	1 cut(s)	425
SacI	GAGCTC	1 cut(s)	70
SapI	GCTCTTC	1 cut(s)	497
SaqAI	TTAA	3 cut(s)	291, 452, 489
SatI	GCNGC	4 cut(s)	73, 147, 588, 644
Sau3AI	GATC	2 cut(s)	10, 278
Sau96I	GGNCC	1 cut(s)	26
ScrFI	CCNGG	3 cut(s)	24, 160, 392
SduI	GDGCHC	1 cut(s)	70
SfaNI	GCATC	2 cut(s)	219, 522
SfcI	CTRYAG	2 cut(s)	330, 408
SinI	GGWCC	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	425
SmlI	CTYRAG	2 cut(s)	76, 572
SmoI	CTYRAG	2 cut(s)	76, 572
SsiI	CCGC	5 cut(s)	73, 471, 477, 587, 621
SspI	AATATT	1 cut(s)	689
SstI	GAGCTC	1 cut(s)	70
StyD4I	CCNGG	3 cut(s)	22, 158, 390
StyI	CCWWGG	2 cut(s)	456, 600
TaaI	ACNGT	4 cut(s)	104, 202, 257, 331
TaiI	ACGT	2 cut(s)	488, 609
TaqI	TCGA	3 cut(s)	49, 425, 435
TatI	WGTACW	1 cut(s)	195
TauI	GCSGC	2 cut(s)	75, 590
Tru1I	TTAA	3 cut(s)	291, 452, 489
Tru9I	TTAA	3 cut(s)	291, 452, 489
TscAI	CASTG	1 cut(s)	334
TseFI	GTSAC	1 cut(s)	461
TseI	GCWGC	2 cut(s)	146, 643
Tsp45I	GTSAC	1 cut(s)	461
TspDTI	ATGAA	1 cut(s)	443
TspGWI	ACGGA	2 cut(s)	366, 558
TspRI	CASTG	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	26
XcmI	CCANNNNNNNNNTGG	1 cut(s)	598
XmiI	GTMKAC	2 cut(s)	312, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.