Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007523

Physical Location & Seq

Genomic Coordinates Forward (+)

34639754 .. 34641252

Gene Structure 1499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g45120.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGCACCCAGGGCCTTACCACCCACCCCCAGGCGCCTACCCTCCTCCTGGGGCCTATGGCTCTGGACCCTATGGCCGTAACGTTCCTCGTTACGGCCATCCTGGCGGCGGCAGTCGTAGAGGAGGTTGCAGTTGCGCAAAGGTGTATTGTTGTTGTTGTTGCTTCTTGTTCATAACCGTAGTGCTGATAATCGGTGGTGCCGCTGCTGCCTATTTTATAATCGACCCCAAGATACCCAAATTCAGCATTGATAGCTTTGAATCCAAGTCCTTCGGTTTTAGCGACGACGGGGGCCTCAAGTCAGAGCTTCAGGCCACTATAAAAGCTGAGAATCCCAACAAGTACCTTGAGTTCATTTTCGGAGAAGCAAATGACCCAAAGGACAACTCGTTCAAAATCTTTTACTCCAATCTCGAGATTGGTTCGGGGACACTCCCAATTTTCACTTTATCCAAAAAGAACACAACAACAATAAAAATGGATCTCAAAGGGGAGTTGAAAAAAGATAGTTTTGCAGAAGGCTCCGGTGAATCACTTGCAGATAAATTGAAGAACAACGACAAGGTCCCTCTGCTAACAGTAGCAATGGTACCAATTAAGTTCAAGTTATCAGGTCAAGAAATTTCTAAGGGTGTACGGTTCGTTGTTAATGTCAACACCACCATGAACGTCAAGAATCTTGCTCAAGGCAAGAATCTCGAAATTTCAGACAGCAAAACTGACATAGCTTTACATATAAACAAATATGCTCATAAGCTTAATGGTAAATTCGATTTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

261

Amino Acids

28.26

Weight (kDa)

9.01

Isoelectric Point (pI)

28.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45110 FvH4_6g45120 FvH4_6g45130
malus_domestica	MD09G1089400.v1.1 MD17G1078800.v1.1
prunus_persica	Prupe.3G236000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0162511 RchiOBHm_Chr2g0162531
rosa_laevigata	RLG00000021350 RLG00000021351
rosa_multiflora	Rmu_sc0004206.1_g000012
rosa_roxburghii	Rroxscaffold_2G00087840 Rroxscaffold_2G00087870
rosa_rugosa	Rorug02G0498200 Rorug02G0498400
rosa_samantha	Rh2AG564200 Rh2AG564300 Rh2BG576800 Rh2BG576900 Rh2CG546800 Rh2CG546900 Rh2DG586600 Rh2DG586700
rosa_wichuraiana	Rw2G046670 Rw2G046680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	218
Acc16I	TGCGCA	1 cut(s)	136
Acc65I	GGTACC	1 cut(s)	589
AccB1I	GGYRCC	3 cut(s)	32, 197, 589
AciI	CCGC	3 cut(s)	105, 108, 201
AclI	AACGTT	1 cut(s)	81
AclWI	GGATC	1 cut(s)	489
AcoI	YGGCCR	2 cut(s)	73, 94
AcsI	RAATTY	4 cut(s)	239, 621, 702, 767
AcuI	CTGAAG	1 cut(s)	293
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	3 cut(s)	344, 591, 636
AfiI	CCNNNNNNNGG	4 cut(s)	29, 47, 92, 107
AgsI	TTSAA	5 cut(s)	260, 394, 499, 550, 604
AjnI	CCWGG	4 cut(s)	7, 28, 46, 100
AloI	GAACNNNNNNTCC	2 cut(s)	374, 406
AluBI	AGCT	5 cut(s)	255, 307, 326, 728, 757
AluI	AGCT	5 cut(s)	255, 307, 326, 728, 757
AlwI	GGATC	1 cut(s)	489
Ama87I	CYCGRG	1 cut(s)	413
AoxI	GGCC	6 cut(s)	11, 51, 73, 94, 292, 312
ApeKI	GCWGC	2 cut(s)	203, 206
ApoI	RAATTY	4 cut(s)	239, 621, 702, 767
Asp718I	GGTACC	1 cut(s)	589
AspLEI	GCGC	2 cut(s)	35, 137
AspS9I	GGNCC	5 cut(s)	11, 51, 65, 292, 565
AsuHPI	GGTGA	1 cut(s)	539
AvaI	CYCGRG	1 cut(s)	413
AvaII	GGWCC	2 cut(s)	65, 565
BanI	GGYRCC	3 cut(s)	32, 197, 589
BbvI	GCAGC	2 cut(s)	190, 193
BccI	CCATC	1 cut(s)	105
BceAI	ACGGC	2 cut(s)	60, 109
BcgI	CGANNNNNNTGC	2 cut(s)	679, 713
BciT130I	CCWGG	4 cut(s)	9, 30, 48, 102
BfoI	RGCGCY	1 cut(s)	36
BglI	GCCNNNNNGGC	1 cut(s)	102
BisI	GCNGC	5 cut(s)	106, 109, 201, 204, 207
BlsI	GCNGC	5 cut(s)	107, 110, 202, 205, 208
Bme1390I	CCNGG	4 cut(s)	9, 30, 48, 102
Bme18I	GGWCC	2 cut(s)	65, 565
BmeT110I	CYCGRG	1 cut(s)	413
BmgT120I	GGNCC	5 cut(s)	11, 51, 65, 292, 565
BmiI	GGNNCC	8 cut(s)	34, 52, 67, 199, 293, 523, 567, 591
BmrFI	CCNGG	4 cut(s)	9, 30, 48, 102
BpuEI	CTTGAG	3 cut(s)	281, 368, 669
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	4 cut(s)	7, 8, 28, 47
BsaWI	WCCGGW	1 cut(s)	524
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 47, 92, 107
Bse3DI	GCAATG	1 cut(s)	591
BseBI	CCWGG	4 cut(s)	9, 30, 48, 102
BseDI	CCNNGG	4 cut(s)	7, 8, 28, 47
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	4 cut(s)	29, 47, 92, 107
BseMI	GCAATG	1 cut(s)	591
BseMII	CTCAG	1 cut(s)	318
BseRI	GAGGAG	2 cut(s)	33, 135
BseXI	GCAGC	2 cut(s)	190, 193
BshFI	GGCC	6 cut(s)	13, 53, 75, 96, 294, 314
BshNI	GGYRCC	3 cut(s)	32, 197, 589
BsiHKCI	CYCGRG	1 cut(s)	413
BsiSI	CCGG	1 cut(s)	525
BslFI	GGGAC	2 cut(s)	442, 551
BslI	CCNNNNNNNGG	4 cut(s)	29, 47, 92, 107
BsmFI	GGGAC	2 cut(s)	442, 551
BsnI	GGCC	6 cut(s)	13, 53, 75, 96, 294, 314
BsoBI	CYCGRG	1 cut(s)	413
Bsp143I	GATC	1 cut(s)	481
BspACI	CCGC	3 cut(s)	105, 108, 201
BspANI	GGCC	6 cut(s)	13, 53, 75, 96, 294, 314
BspCNI	CTCAG	1 cut(s)	319
BspLI	GGNNCC	8 cut(s)	34, 52, 67, 199, 293, 523, 567, 591
BspPI	GGATC	1 cut(s)	489
BspT107I	GGYRCC	3 cut(s)	32, 197, 589
BsrDI	GCAATG	1 cut(s)	591
BssECI	CCNNGG	4 cut(s)	7, 8, 28, 47
BssMI	GATC	1 cut(s)	481
BssNI	GRCGYC	1 cut(s)	33
Bst2UI	CCWGG	4 cut(s)	9, 30, 48, 102
Bst4CI	ACNGT	3 cut(s)	178, 580, 639
BstACI	GRCGYC	1 cut(s)	33
BstDEI	CTNAG	2 cut(s)	327, 627
BstF5I	GGATG	1 cut(s)	97
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	2 cut(s)	35, 137
BstKTI	GATC	1 cut(s)	484
BstMBI	GATC	1 cut(s)	481
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 102, 206, 252
BstNI	CCWGG	4 cut(s)	9, 30, 48, 102
BstSCI	CCNGG	4 cut(s)	7, 28, 46, 100
BstV1I	GCAGC	2 cut(s)	190, 193
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
BsuRI	GGCC	6 cut(s)	13, 53, 75, 96, 294, 314
BtsCI	GGATG	1 cut(s)	97
CfoI	GCGC	2 cut(s)	35, 137
Cfr13I	GGNCC	5 cut(s)	11, 51, 65, 292, 565
Csp6I	GTAC	3 cut(s)	343, 590, 635
CviAII	CATG	1 cut(s)	664
CviQI	GTAC	3 cut(s)	343, 590, 635
DdeI	CTNAG	2 cut(s)	327, 627
DinI	GGCGCC	1 cut(s)	34
DpnI	GATC	1 cut(s)	483
DpnII	GATC	1 cut(s)	481
EaeI	YGGCCR	2 cut(s)	73, 94
Eco47I	GGWCC	2 cut(s)	65, 565
Eco57I	CTGAAG	1 cut(s)	293
Eco88I	CYCGRG	1 cut(s)	413
EcoO109I	RGGNCCY	4 cut(s)	11, 51, 292, 565
EcoRII	CCWGG	4 cut(s)	7, 28, 46, 100
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
FaeI	CATG	1 cut(s)	667
FaqI	GGGAC	2 cut(s)	442, 551
FatI	CATG	1 cut(s)	663
Fnu4HI	GCNGC	5 cut(s)	106, 109, 201, 204, 207
FokI	GGATG	1 cut(s)	84
Fsp4HI	GCNGC	5 cut(s)	106, 109, 201, 204, 207
FspI	TGCGCA	1 cut(s)	136
GlaI	GCGC	2 cut(s)	34, 136
GluI	GCNGC	5 cut(s)	106, 109, 201, 204, 207
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	6 cut(s)	13, 53, 75, 96, 294, 314
HapII	CCGG	1 cut(s)	525
HhaI	GCGC	2 cut(s)	35, 137
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	1 cut(s)	667
Hin6I	GCGC	2 cut(s)	33, 135
HinP1I	GCGC	2 cut(s)	33, 135
HincII	GTYRAC	1 cut(s)	655
HindII	GTYRAC	1 cut(s)	655
HindIII	AAGCTT	1 cut(s)	755
HinfI	GANTC	5 cut(s)	260, 331, 530, 676, 694
HpaII	CCGG	1 cut(s)	525
HphI	GGTGA	1 cut(s)	539
Hpy166II	GTNNAC	2 cut(s)	635, 655
Hpy188I	TCNGA	3 cut(s)	304, 362, 709
Hpy188III	TCNNGA	6 cut(s)	63, 413, 415, 617, 673, 698
Hpy8I	GTNNAC	2 cut(s)	635, 655
Hpy99I	CGWCG	2 cut(s)	287, 290
HpyAV	CCTTC	2 cut(s)	280, 512
HpyCH4III	ACNGT	3 cut(s)	178, 580, 639
HpyCH4IV	ACGT	2 cut(s)	81, 669
HpyCH4V	TGCA	4 cut(s)	4, 129, 515, 539
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 102, 206, 252
HpyF3I	CTNAG	2 cut(s)	327, 627
HpySE526I	ACGT	2 cut(s)	81, 669
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	667
HspAI	GCGC	2 cut(s)	33, 135
KasI	GGCGCC	1 cut(s)	32
KpnI	GGTACC	1 cut(s)	593
Kzo9I	GATC	1 cut(s)	481
LmnI	GCTCC	1 cut(s)	527
Lsp1109I	GCAGC	2 cut(s)	190, 193
MaeII	ACGT	2 cut(s)	81, 669
MaeIII	GTNAC	2 cut(s)	77, 89
MalI	GATC	1 cut(s)	483
MboI	GATC	1 cut(s)	481
MboII	GAAGA	1 cut(s)	562
MflI	RGATCY	1 cut(s)	481
MluCI	AATT	7 cut(s)	239, 438, 545, 594, 621, 702, 767
Mly113I	GGCGCC	1 cut(s)	33
MnlI	CCTC	7 cut(s)	51, 54, 96, 113, 116, 305, 579
MseI	TTAA	3 cut(s)	597, 648, 759
MslI	CAYNNNNRTG	1 cut(s)	662
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	1 cut(s)	525
MspR9I	CCNGG	4 cut(s)	9, 30, 48, 102
MvaI	CCWGG	4 cut(s)	9, 30, 48, 102
MwoI	GCNNNNNNNGC	4 cut(s)	10, 102, 206, 252
NarI	GGCGCC	1 cut(s)	33
NdeII	GATC	1 cut(s)	481
NlaIII	CATG	1 cut(s)	667
NlaIV	GGNNCC	8 cut(s)	34, 52, 67, 199, 293, 523, 567, 591
NsbI	TGCGCA	1 cut(s)	136
PaeR7I	CTCGAG	1 cut(s)	413
PasI	CCCWGGG	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PfeI	GAWTC	5 cut(s)	260, 331, 530, 676, 694
PflFI	GACNNNGTC	1 cut(s)	563
PkrI	GCNGC	5 cut(s)	107, 110, 202, 205, 208
PluTI	GGCGCC	1 cut(s)	36
PpuMI	RGGWCCY	1 cut(s)	565
PsiI	TTATAA	1 cut(s)	218
Psp1406I	AACGTT	1 cut(s)	81
Psp5II	RGGWCCY	1 cut(s)	565
Psp6I	CCWGG	4 cut(s)	7, 28, 46, 100
PspGI	CCWGG	4 cut(s)	7, 28, 46, 100
PspN4I	GGNNCC	8 cut(s)	34, 52, 67, 199, 293, 523, 567, 591
PspPI	GGNCC	5 cut(s)	11, 51, 65, 292, 565
PspPPI	RGGWCCY	1 cut(s)	565
PsrI	GAACNNNNNNTAC	2 cut(s)	335, 367
PsuI	RGATCY	1 cut(s)	481
PsyI	GACNNNGTC	1 cut(s)	563
RsaI	GTAC	3 cut(s)	344, 591, 636
RsaNI	GTAC	3 cut(s)	343, 590, 635
RseI	CAYNNNNRTG	1 cut(s)	662
SaqAI	TTAA	3 cut(s)	597, 648, 759
SatI	GCNGC	5 cut(s)	106, 109, 201, 204, 207
Sau3AI	GATC	1 cut(s)	481
Sau96I	GGNCC	5 cut(s)	11, 51, 65, 292, 565
ScrFI	CCNGG	4 cut(s)	9, 30, 48, 102
SfoI	GGCGCC	1 cut(s)	34
Sfr274I	CTCGAG	1 cut(s)	413
SinI	GGWCC	2 cut(s)	65, 565
SlaI	CTCGAG	1 cut(s)	413
SmiMI	CAYNNNNRTG	1 cut(s)	662
SmlI	CTYRAG	4 cut(s)	296, 347, 413, 684
SmoI	CTYRAG	4 cut(s)	296, 347, 413, 684
Sse9I	AATT	7 cut(s)	239, 438, 545, 594, 621, 702, 767
SsiI	CCGC	3 cut(s)	105, 108, 201
SspDI	GGCGCC	1 cut(s)	32
StyD4I	CCNGG	4 cut(s)	7, 28, 46, 100
TaaI	ACNGT	3 cut(s)	178, 580, 639
TaiI	ACGT	2 cut(s)	84, 672
TaqI	TCGA	4 cut(s)	222, 414, 699, 771
TasI	AATT	7 cut(s)	239, 438, 545, 594, 621, 702, 767
TauI	GCSGC	3 cut(s)	108, 111, 203
TfiI	GAWTC	5 cut(s)	260, 331, 530, 676, 694
Tru1I	TTAA	3 cut(s)	597, 648, 759
Tru9I	TTAA	3 cut(s)	597, 648, 759
TseI	GCWGC	2 cut(s)	203, 206
TspDTI	ATGAA	3 cut(s)	160, 343, 680
Tth111I	GACNNNGTC	1 cut(s)	563
VpaK11BI	GGWCC	2 cut(s)	65, 565
XapI	RAATTY	4 cut(s)	239, 621, 702, 767
XhoI	CTCGAG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.