Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007523

Physical Location & Seq

Genomic Coordinates Forward (+)

79343529 .. 79344571

Gene Structure 1043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG576900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGCACCCAGGGCCTTACAACCCGCCACCAGGTGCCTACCCGCCTCCTGGACCCTATGGCCGTAACGTTCCTCGCTATGGCCATCCTGGAGCAGGCAGTCGTAGAGGTGGCTGCAGTTGCTTAAAGGTGTATTGTTGTTGTTGCTGCTGCTTGTTCATAACCCTAGTTCTGATTATCGGTGGCATCGTTCTTGCCTACTTTATAATCAAGCCTCACACACCCAAATTCAGCATCGATAAGTTTGAAGTCAAATCCTTCAACATTAGCGACGATTTCAGCCTCAAGTCACACCTTGAGATCACTGCAAAAGCTGACAATCCCAACAAGTACATCGAAATCACATACGGAGAAGGAAAGGAGCCGAAGGACAACTCGGTCCAAGTCTTGTACTCAAATGTCACGCTTTGTTCCGGGACCATCCCAAATATCTTTCAACCCAAAAAGAACGTGACAATGATTAAAATCGATCTCAAAGGGGACTTGAAAAAAGAAGATTGGGCAGCAGGCTCCGGTGAATCACTTGCATCGAAATTGAAGAACAACGACAAGATCCCTTTGCTTGTTGCAATAAAAGCACCAGTTAAGGTAAAGCTTGGAAGTTGGTGGGTAGGGAAGGATGAGCCGTTGGTTGTTAGTATCAACGCCACCATGAACGTCAAGAATCTTGCTGAAGGCAAGAACCCAGAGATTTCAGACAAAAACTATTCTATAGGTCTTTTATTCGGCAAAACTTATACTAAGCTTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

249

Amino Acids

27.22

Weight (kDa)

9.14

Isoelectric Point (pI)

21.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45110 FvH4_6g45120 FvH4_6g45130
malus_domestica	MD09G1089400.v1.1 MD17G1078800.v1.1
prunus_persica	Prupe.3G236000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0162511 RchiOBHm_Chr2g0162531
rosa_laevigata	RLG00000021350 RLG00000021351
rosa_multiflora	Rmu_sc0004206.1_g000012
rosa_roxburghii	Rroxscaffold_2G00087840 Rroxscaffold_2G00087870
rosa_rugosa	Rorug02G0498200 Rorug02G0498400
rosa_samantha	Rh2AG564200 Rh2AG564300 Rh2BG576800 Rh2BG576900 Rh2CG546800 Rh2CG546900 Rh2DG586600 Rh2DG586700
rosa_wichuraiana	Rw2G046670 Rw2G046680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	203
AasI	GACNNNNNNGTC	1 cut(s)	374
AccB1I	GGYRCC	1 cut(s)	32
AciI	CCGC	2 cut(s)	23, 41
AclI	AACGTT	1 cut(s)	66
AclWI	GGATC	1 cut(s)	544
AcoI	YGGCCR	2 cut(s)	58, 79
AcsI	RAATTY	1 cut(s)	224
AcuI	CTGAAG	1 cut(s)	690
AdeI	CACNNNGTG	1 cut(s)	32
AfaI	GTAC	2 cut(s)	329, 389
AfiI	CCNNNNNNNGG	4 cut(s)	29, 47, 77, 92
AgsI	TTSAA	5 cut(s)	245, 259, 434, 484, 535
AjnI	CCWGG	4 cut(s)	7, 28, 46, 85
AluBI	AGCT	3 cut(s)	311, 592, 742
AluI	AGCT	3 cut(s)	311, 592, 742
AlwI	GGATC	1 cut(s)	544
AoxI	GGCC	3 cut(s)	11, 58, 79
ApeKI	GCWGC	4 cut(s)	111, 144, 147, 500
ApoI	RAATTY	1 cut(s)	224
AspS9I	GGNCC	4 cut(s)	11, 50, 376, 414
AsuC2I	CCSGG	1 cut(s)	412
AsuHPI	GGTGA	1 cut(s)	524
AvaII	GGWCC	3 cut(s)	50, 376, 414
BalI	TGGCCA	1 cut(s)	81
BanI	GGYRCC	1 cut(s)	32
BbvI	GCAGC	4 cut(s)	98, 131, 134, 512
BccI	CCATC	2 cut(s)	90, 425
BceAI	ACGGC	2 cut(s)	45, 607
BciT130I	CCWGG	4 cut(s)	9, 30, 48, 87
BcnI	CCSGG	1 cut(s)	412
BfaI	CTAG	1 cut(s)	164
BfmI	CTRYAG	2 cut(s)	112, 708
BisI	GCNGC	4 cut(s)	112, 145, 148, 501
BlsI	GCNGC	4 cut(s)	113, 146, 149, 502
Bme1390I	CCNGG	5 cut(s)	9, 30, 48, 87, 412
Bme18I	GGWCC	3 cut(s)	50, 376, 414
BmgT120I	GGNCC	4 cut(s)	11, 50, 376, 414
BmiI	GGNNCC	5 cut(s)	34, 52, 360, 415, 508
BmrFI	CCNGG	5 cut(s)	9, 30, 48, 87, 412
BmsI	GCATC	3 cut(s)	192, 240, 533
BpmI	CTGGAG	1 cut(s)	108
BpuEI	CTTGAG	2 cut(s)	266, 314
BpuMI	CCSGG	1 cut(s)	412
Bsa29I	ATCGAT	2 cut(s)	234, 465
BsaBI	GATNNNNATC	1 cut(s)	461
BsaJI	CCNNGG	2 cut(s)	7, 8
BsaWI	WCCGGW	1 cut(s)	509
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 47, 77, 92
Bse1I	ACTGG	1 cut(s)	578
Bse8I	GATNNNNATC	1 cut(s)	461
BseBI	CCWGG	4 cut(s)	9, 30, 48, 87
BseCI	ATCGAT	2 cut(s)	234, 465
BseDI	CCNNGG	2 cut(s)	7, 8
BseGI	GGATG	3 cut(s)	82, 417, 622
BseJI	GATNNNNATC	1 cut(s)	461
BseLI	CCNNNNNNNGG	4 cut(s)	29, 47, 77, 92
BseNI	ACTGG	1 cut(s)	578
BseXI	GCAGC	4 cut(s)	98, 131, 134, 512
BshFI	GGCC	3 cut(s)	13, 60, 81
BshNI	GGYRCC	1 cut(s)	32
BshVI	ATCGAT	2 cut(s)	234, 465
BsiSI	CCGG	2 cut(s)	411, 510
BslFI	GGGAC	2 cut(s)	427, 491
BslI	CCNNNNNNNGG	4 cut(s)	29, 47, 77, 92
BsmFI	GGGAC	2 cut(s)	427, 491
BsnI	GGCC	3 cut(s)	13, 60, 81
Bsp143I	GATC	3 cut(s)	297, 466, 549
BspACI	CCGC	2 cut(s)	23, 41
BspANI	GGCC	3 cut(s)	13, 60, 81
BspDI	ATCGAT	2 cut(s)	234, 465
BspLI	GGNNCC	5 cut(s)	34, 52, 360, 415, 508
BspMAI	CTGCAG	1 cut(s)	116
BspPI	GGATC	1 cut(s)	544
BspT107I	GGYRCC	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	578
BssECI	CCNNGG	2 cut(s)	7, 8
BssMI	GATC	3 cut(s)	297, 466, 549
Bst2UI	CCWGG	4 cut(s)	9, 30, 48, 87
BstC8I	GCNNGC	2 cut(s)	94, 505
BstDEI	CTNAG	1 cut(s)	738
BstENI	CCTNNNNNAGG	1 cut(s)	90
BstF5I	GGATG	3 cut(s)	82, 417, 622
BstKTI	GATC	3 cut(s)	300, 469, 552
BstMBI	GATC	3 cut(s)	297, 466, 549
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 117, 572
BstNI	CCWGG	4 cut(s)	9, 30, 48, 87
BstSCI	CCNGG	5 cut(s)	7, 28, 46, 85, 410
BstSFI	CTRYAG	2 cut(s)	112, 708
BstV1I	GCAGC	4 cut(s)	98, 131, 134, 512
BstX2I	RGATCY	1 cut(s)	549
BstYI	RGATCY	1 cut(s)	549
Bsu15I	ATCGAT	2 cut(s)	234, 465
BsuRI	GGCC	3 cut(s)	13, 60, 81
BsuTUI	ATCGAT	2 cut(s)	234, 465
BtsCI	GGATG	3 cut(s)	82, 417, 622
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	1 cut(s)	300
Cac8I	GCNNGC	2 cut(s)	94, 505
Cfr13I	GGNCC	4 cut(s)	11, 50, 376, 414
ClaI	ATCGAT	2 cut(s)	234, 465
CsiI	ACCWGGT	1 cut(s)	28
Csp6I	GTAC	2 cut(s)	328, 388
CviAII	CATG	1 cut(s)	649
CviQI	GTAC	2 cut(s)	328, 388
DdeI	CTNAG	1 cut(s)	738
DpnI	GATC	3 cut(s)	299, 468, 551
DpnII	GATC	3 cut(s)	297, 466, 549
DraIII	CACNNNGTG	1 cut(s)	32
DrdI	GACNNNNNNGTC	1 cut(s)	374
DseDI	GACNNNNNNGTC	1 cut(s)	374
EaeI	YGGCCR	2 cut(s)	58, 79
Eco47I	GGWCC	3 cut(s)	50, 376, 414
Eco57I	CTGAAG	1 cut(s)	690
EcoNI	CCTNNNNNAGG	1 cut(s)	90
EcoO109I	RGGNCCY	1 cut(s)	11
EcoRII	CCWGG	4 cut(s)	7, 28, 46, 85
FaeI	CATG	1 cut(s)	652
FaiI	YATR	8 cut(s)	57, 78, 158, 203, 343, 650, 710, 735
FaqI	GGGAC	2 cut(s)	427, 491
FatI	CATG	1 cut(s)	648
FauI	CCCGC	2 cut(s)	30, 48
Fnu4HI	GCNGC	4 cut(s)	112, 145, 148, 501
FokI	GGATG	3 cut(s)	69, 404, 629
Fsp4HI	GCNGC	4 cut(s)	112, 145, 148, 501
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	4 cut(s)	112, 145, 148, 501
GsuI	CTGGAG	1 cut(s)	108
HaeIII	GGCC	3 cut(s)	13, 60, 81
HapII	CCGG	2 cut(s)	411, 510
Hin1II	CATG	1 cut(s)	652
HindIII	AAGCTT	2 cut(s)	590, 740
HinfI	GANTC	2 cut(s)	515, 661
HpaII	CCGG	2 cut(s)	411, 510
HphI	GGTGA	1 cut(s)	524
Hpy188I	TCNGA	2 cut(s)	171, 694
Hpy188III	TCNNGA	1 cut(s)	658
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	5 cut(s)	265, 344, 358, 607, 665
HpyCH4IV	ACGT	3 cut(s)	66, 447, 654
HpyCH4V	TGCA	5 cut(s)	4, 114, 305, 524, 566
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 117, 572
HpyF3I	CTNAG	1 cut(s)	738
HpySE526I	ACGT	3 cut(s)	66, 447, 654
Hsp92II	CATG	1 cut(s)	652
Kzo9I	GATC	3 cut(s)	297, 466, 549
LmnI	GCTCC	3 cut(s)	89, 358, 512
Lsp1109I	GCAGC	4 cut(s)	98, 131, 134, 512
LweI	GCATC	3 cut(s)	192, 240, 533
MabI	ACCWGGT	1 cut(s)	28
MaeI	CTAG	1 cut(s)	164
MaeII	ACGT	3 cut(s)	66, 447, 654
MaeIII	GTNAC	4 cut(s)	62, 285, 397, 448
MalI	GATC	3 cut(s)	299, 468, 551
MboI	GATC	3 cut(s)	297, 466, 549
MboII	GAAGA	2 cut(s)	503, 547
MflI	RGATCY	1 cut(s)	549
MlsI	TGGCCA	1 cut(s)	81
MluCI	AATT	2 cut(s)	224, 530
MluNI	TGGCCA	1 cut(s)	81
MnlI	CCTC	5 cut(s)	54, 81, 98, 222, 290
Mox20I	TGGCCA	1 cut(s)	81
MscI	TGGCCA	1 cut(s)	81
MseI	TTAA	3 cut(s)	122, 459, 582
Msp20I	TGGCCA	1 cut(s)	81
MspI	CCGG	2 cut(s)	411, 510
MspR9I	CCNGG	5 cut(s)	9, 30, 48, 87, 412
MvaI	CCWGG	4 cut(s)	9, 30, 48, 87
MwoI	GCNNNNNNNGC	3 cut(s)	10, 117, 572
NciI	CCSGG	1 cut(s)	412
NdeII	GATC	3 cut(s)	297, 466, 549
NlaIII	CATG	1 cut(s)	652
NlaIV	GGNNCC	5 cut(s)	34, 52, 360, 415, 508
NmuCI	GTSAC	3 cut(s)	285, 397, 448
PasI	CCCWGGG	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PfeI	GAWTC	2 cut(s)	515, 661
PfoI	TCCNGGA	3 cut(s)	46, 85, 410
PkrI	GCNGC	4 cut(s)	113, 146, 149, 502
PsiI	TTATAA	1 cut(s)	203
Psp1406I	AACGTT	1 cut(s)	66
Psp6I	CCWGG	4 cut(s)	7, 28, 46, 85
PspGI	CCWGG	4 cut(s)	7, 28, 46, 85
PspN4I	GGNNCC	5 cut(s)	34, 52, 360, 415, 508
PspPI	GGNCC	4 cut(s)	11, 50, 376, 414
PstI	CTGCAG	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	549
RsaI	GTAC	2 cut(s)	329, 389
RsaNI	GTAC	2 cut(s)	328, 388
SaqAI	TTAA	3 cut(s)	122, 459, 582
SatI	GCNGC	4 cut(s)	112, 145, 148, 501
Sau3AI	GATC	3 cut(s)	297, 466, 549
Sau96I	GGNCC	4 cut(s)	11, 50, 376, 414
ScrFI	CCNGG	5 cut(s)	9, 30, 48, 87, 412
SexAI	ACCWGGT	1 cut(s)	28
SfaNI	GCATC	3 cut(s)	192, 240, 533
SfcI	CTRYAG	2 cut(s)	112, 708
SinI	GGWCC	3 cut(s)	50, 376, 414
SmlI	CTYRAG	2 cut(s)	281, 293
SmoI	CTYRAG	2 cut(s)	281, 293
Sse9I	AATT	2 cut(s)	224, 530
SsiI	CCGC	2 cut(s)	23, 41
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	5 cut(s)	7, 28, 46, 85, 410
TaiI	ACGT	3 cut(s)	69, 450, 657
TaqI	TCGA	4 cut(s)	234, 333, 465, 527
TaqII	GACCGA	1 cut(s)	364
TasI	AATT	2 cut(s)	224, 530
TatI	WGTACW	2 cut(s)	327, 387
TfiI	GAWTC	2 cut(s)	515, 661
Tru1I	TTAA	3 cut(s)	122, 459, 582
Tru9I	TTAA	3 cut(s)	122, 459, 582
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	3 cut(s)	285, 397, 448
TseI	GCWGC	4 cut(s)	111, 144, 147, 500
Tsp45I	GTSAC	3 cut(s)	285, 397, 448
TspDTI	ATGAA	2 cut(s)	145, 665
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	1 cut(s)	307
VpaK11BI	GGWCC	3 cut(s)	50, 376, 414
XagI	CCTNNNNNAGG	1 cut(s)	90
XapI	RAATTY	1 cut(s)	224
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.