Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000364.1

Orthogroup ID

OG0014406

Physical Location & Seq

Genomic Coordinates Forward (+)

1135 .. 2273

Gene Structure 1139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000364.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atgcggatgagctgtaatggatgccgaatactacgcaaggggtgcagtgagaattgtagcatcagaccctgtttgcagtggataaagagccccgaatctcaagccaacgccaccgttttcctcgccaagttttacggccgcgccgggctcatgaacctcatcaacgccggacccgaacacctccgacctgcgattttccggtcactgctctacgaggcatgcgggaggattgtgaacccgatttacgggtcggtcgggttgttgtggtccgggtcatggcagctatgccaagccgccgtggagaacgtgctgaagggccagccgatcacgccgatcacctctgaggccgcggccagcgggcatggcccacctctcaaggcgtacgacattcgacacgtgtccaaggacgagaactccgccgcgtccaatgacccccagaaggcaaagacgcgctaccggttcaagaggtccgtcgcgaagcccaagcagcccaacaagaccgggtcgggatccggagttgaggacgcggcggctcgctttgaagccaagccgaactggaccagcgacgagttcaaccggtcgacgagtcacgagtcgtcgctgagtcaccagtccgaggctgccaacgtggacggcgacagcaaggaaaccgagagcatggtttcctcggagacggccgaggcttcgctgttgttccgagccgagccggagtcatcggctcacaagcgaaccgcgccggttcaggaaaacgagttaggtctggagctgactctgggattcgaatcgtcatcacgtgctccccacgtggttccagtcaagaagagaagggtagacgcctcagaattctgcggtgggtcgtcgtcgggcgacggcgcgtgtaaaatggagctgggccttgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

300

Amino Acids

32.37

Weight (kDa)

8.53

Isoelectric Point (pI)

54.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02550
fragaria_vesca	FvH4_6g45150
malus_domestica	MD09G1088700.v1.1 MD17G1078600.v1.1
prunus_persica	Prupe.3G236200_v2.0.a1
pyrus_communis	pycom09g01450 pycom17g07790
rosa_chinensis	RchiOBHm_Chr2g0162621
rosa_laevigata	RLG00000021353
rosa_multiflora	Rmu_ssc0000364.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087820
rosa_rugosa	Rorug02G0498400
rosa_samantha	Rh2AG564500 Rh2BG577400 Rh2CG547100 Rh2DG587000
rosa_wichuraiana	Rw2G046700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	196
AccI	GTMKAC	2 cut(s)	581, 831
AccII	CGCG	8 cut(s)	141, 350, 422, 451, 476, 527, 734, 875
AccIII	TCCGGA	1 cut(s)	512
AclWI	GGATC	2 cut(s)	504, 517
AcoI	YGGCCR	3 cut(s)	136, 351, 675
AcsI	RAATTY	1 cut(s)	842
AcuI	CTGAAG	1 cut(s)	332
AcvI	CACGTG	3 cut(s)	397, 794, 805
AcyI	GRCGYC	1 cut(s)	834
AfaI	GTAC	1 cut(s)	383
AfiI	CCNNNNNNNGG	4 cut(s)	245, 276, 439, 616
AflIII	ACRYGT	2 cut(s)	394, 396
AgeI	ACCGGT	2 cut(s)	456, 576
AgsI	TTSAA	3 cut(s)	463, 542, 574
AluBI	AGCT	4 cut(s)	12, 283, 766, 889
AluI	AGCT	4 cut(s)	12, 283, 766, 889
Alw21I	GWGCWC	1 cut(s)	799
Alw26I	GTCTC	1 cut(s)	665
AlwI	GGATC	2 cut(s)	504, 517
AlwNI	CAGNNNCTG	1 cut(s)	69
Aor13HI	TCCGGA	1 cut(s)	512
AoxI	GGCC	7 cut(s)	136, 316, 345, 351, 364, 675, 892
ApeKI	GCWGC	3 cut(s)	280, 487, 620
ApoI	RAATTY	1 cut(s)	842
AsiGI	ACCGGT	2 cut(s)	456, 576
AspLEI	GCGC	4 cut(s)	143, 453, 736, 875
AspS9I	GGNCC	7 cut(s)	170, 267, 316, 365, 468, 558, 892
AsuC2I	CCSGG	3 cut(s)	145, 271, 502
AsuHPI	GGTGA	2 cut(s)	328, 599
AsuII	TTCGAA	1 cut(s)	780
AvaII	GGWCC	4 cut(s)	170, 267, 468, 558
BamHI	GGATCC	1 cut(s)	509
BanII	GRGCYC	2 cut(s)	92, 150
BauI	CACGAG	1 cut(s)	590
BbrPI	CACGTG	3 cut(s)	397, 794, 805
Bbv12I	GWGCWC	1 cut(s)	799
BbvI	GCAGC	3 cut(s)	292, 499, 607
BceAI	ACGGC	5 cut(s)	151, 281, 649, 690, 886
BcnI	CCSGG	3 cut(s)	145, 271, 502
BcoDI	GTCTC	1 cut(s)	665
BfuAI	ACCTGC	1 cut(s)	196
Bme1390I	CCNGG	3 cut(s)	145, 271, 502
Bme18I	GGWCC	4 cut(s)	170, 267, 468, 558
BmgT120I	GGNCC	7 cut(s)	170, 267, 316, 365, 468, 558, 892
BmiI	GGNNCC	3 cut(s)	172, 511, 810
BmrFI	CCNGG	3 cut(s)	145, 271, 502
BmsI	GCATC	2 cut(s)	11, 69
BoxI	GACNNNNGTC	1 cut(s)	397
BpmI	CTGGAG	1 cut(s)	782
Bpu14I	TTCGAA	1 cut(s)	780
BpuEI	CTTGAG	2 cut(s)	84, 359
BpuMI	CCSGG	3 cut(s)	145, 271, 502
BsaAI	YACGTR	3 cut(s)	397, 794, 805
BsaBI	GATNNNNATC	1 cut(s)	781
BsaHI	GRCGYC	1 cut(s)	834
BsaJI	CCNNGG	6 cut(s)	297, 348, 402, 615, 666, 678
BsaWI	WCCGGW	4 cut(s)	198, 456, 512, 576
BsaXI	ACNNNNNCTCC	2 cut(s)	398, 428
Bsc4I	CCNNNNNNNGG	4 cut(s)	245, 276, 439, 616
Bse118I	RCCGGY	3 cut(s)	456, 576, 736
Bse1I	ACTGG	3 cut(s)	560, 610, 812
Bse8I	GATNNNNATC	1 cut(s)	781
BseAI	TCCGGA	1 cut(s)	512
BseDI	CCNNGG	6 cut(s)	297, 348, 402, 615, 666, 678
BseGI	GGATG	2 cut(s)	12, 26
BseJI	GATNNNNATC	1 cut(s)	781
BseLI	CCNNNNNNNGG	4 cut(s)	245, 276, 439, 616
BseMII	CTCAG	3 cut(s)	333, 593, 852
BseNI	ACTGG	3 cut(s)	560, 610, 812
BseX3I	CGGCCG	2 cut(s)	136, 675
BseXI	GCAGC	3 cut(s)	292, 499, 607
BseYI	CCCAGC	1 cut(s)	889
BsgI	GTGCAG	1 cut(s)	64
Bsh1236I	CGCG	8 cut(s)	141, 350, 422, 451, 476, 527, 734, 875
Bsh1285I	CGRYCG	4 cut(s)	139, 255, 581, 678
BshFI	GGCC	7 cut(s)	138, 318, 347, 353, 366, 677, 894
BshTI	ACCGGT	2 cut(s)	456, 576
BsiEI	CGRYCG	4 cut(s)	139, 255, 581, 678
BsiHKAI	GWGCWC	1 cut(s)	799
BsiWI	CGTACG	1 cut(s)	381
BslI	CCNNNNNNNGG	4 cut(s)	245, 276, 439, 616
BsmAI	GTCTC	1 cut(s)	665
BsmBI	CGTCTC	1 cut(s)	665
BsnI	GGCC	7 cut(s)	138, 318, 347, 353, 366, 677, 894
Bsp119I	TTCGAA	1 cut(s)	780
Bsp1286I	GDGCHC	3 cut(s)	92, 150, 799
Bsp13I	TCCGGA	1 cut(s)	512
Bsp143I	GATC	3 cut(s)	324, 333, 509
Bsp68I	TCGCGA	1 cut(s)	476
BspANI	GGCC	7 cut(s)	138, 318, 347, 353, 366, 677, 894
BspCNI	CTCAG	3 cut(s)	334, 594, 851
BspEI	TCCGGA	1 cut(s)	512
BspFNI	CGCG	8 cut(s)	141, 350, 422, 451, 476, 527, 734, 875
BspHI	TCATGA	1 cut(s)	150
BspLI	GGNNCC	3 cut(s)	172, 511, 810
BspMI	ACCTGC	1 cut(s)	196
BspPI	GGATC	2 cut(s)	504, 517
BspT104I	TTCGAA	1 cut(s)	780
BsrFI	RCCGGY	3 cut(s)	456, 576, 736
BsrI	ACTGG	3 cut(s)	560, 610, 812
BssAI	RCCGGY	3 cut(s)	456, 576, 736
BssECI	CCNNGG	6 cut(s)	297, 348, 402, 615, 666, 678
BssMI	GATC	3 cut(s)	324, 333, 509
BssNI	GRCGYC	1 cut(s)	834
BssSI	CACGAG	1 cut(s)	590
BssT1I	CCWWGG	1 cut(s)	402
Bst2BI	CACGAG	1 cut(s)	590
Bst4CI	ACNGT	1 cut(s)	115
Bst6I	CTCTTC	1 cut(s)	815
BstACI	GRCGYC	1 cut(s)	834
BstAPI	GCANNNNNTGC	1 cut(s)	42
BstBAI	YACGTR	3 cut(s)	397, 794, 805
BstBI	TTCGAA	1 cut(s)	780
BstC8I	GCNNGC	5 cut(s)	220, 320, 355, 359, 535
BstDEI	CTNAG	3 cut(s)	342, 602, 838
BstDSI	CCRYGG	2 cut(s)	297, 348
BstF5I	GGATG	2 cut(s)	12, 26
BstFNI	CGCG	8 cut(s)	141, 350, 422, 451, 476, 527, 734, 875
BstHHI	GCGC	4 cut(s)	143, 453, 736, 875
BstKTI	GATC	3 cut(s)	327, 336, 512
BstMAI	GTCTC	1 cut(s)	665
BstMBI	GATC	3 cut(s)	324, 333, 509
BstMCI	CGRYCG	4 cut(s)	139, 255, 581, 678
BstMWI	GCNNNNNNNGC	5 cut(s)	42, 328, 363, 487, 733
BstNSI	RCATGY	1 cut(s)	222
BstPAI	GACNNNNGTC	1 cut(s)	397
BstSCI	CCNGG	3 cut(s)	143, 269, 500
BstUI	CGCG	8 cut(s)	141, 350, 422, 451, 476, 527, 734, 875
BstV1I	GCAGC	3 cut(s)	292, 499, 607
BstX2I	RGATCY	1 cut(s)	509
BstYI	RGATCY	1 cut(s)	509
BstZI	CGGCCG	2 cut(s)	136, 675
BsuRI	GGCC	7 cut(s)	138, 318, 347, 353, 366, 677, 894
BtgI	CCRYGG	2 cut(s)	297, 348
BtsCI	GGATG	2 cut(s)	12, 26
BtsI	GCAGTG	3 cut(s)	52, 83, 203
BtsIMutI	CAGTG	3 cut(s)	52, 83, 203
BtuMI	TCGCGA	1 cut(s)	476
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	5 cut(s)	220, 320, 355, 359, 535
CaiI	CAGNNNCTG	1 cut(s)	69
CciI	TCATGA	1 cut(s)	150
CfoI	GCGC	4 cut(s)	143, 453, 736, 875
Cfr10I	RCCGGY	3 cut(s)	456, 576, 736
Cfr13I	GGNCC	7 cut(s)	170, 267, 316, 365, 468, 558, 892
Cfr42I	CCGCGG	1 cut(s)	351
CseI	GACGC	4 cut(s)	411, 457, 533, 842
Csp6I	GTAC	1 cut(s)	382
CspAI	ACCGGT	2 cut(s)	456, 576
CviAII	CATG	5 cut(s)	151, 219, 276, 362, 658
CviQI	GTAC	1 cut(s)	382
DdeI	CTNAG	3 cut(s)	342, 602, 838
DpnI	GATC	3 cut(s)	326, 335, 511
DpnII	GATC	3 cut(s)	324, 333, 509
EaeI	YGGCCR	3 cut(s)	136, 351, 675
EagI	CGGCCG	2 cut(s)	136, 675
Eam1104I	CTCTTC	1 cut(s)	815
EarI	CTCTTC	1 cut(s)	815
EciI	GGCGGA	1 cut(s)	406
EclXI	CGGCCG	2 cut(s)	136, 675
Eco130I	CCWWGG	1 cut(s)	402
Eco24I	GRGCYC	2 cut(s)	92, 150
Eco47I	GGWCC	4 cut(s)	170, 267, 468, 558
Eco52I	CGGCCG	2 cut(s)	136, 675
Eco57I	CTGAAG	1 cut(s)	332
Eco72I	CACGTG	3 cut(s)	397, 794, 805
EcoRI	GAATTC	1 cut(s)	842
EcoT14I	CCWWGG	1 cut(s)	402
EcoT38I	GRGCYC	2 cut(s)	92, 150
ErhI	CCWWGG	1 cut(s)	402
Esp3I	CGTCTC	1 cut(s)	665
FaeI	CATG	5 cut(s)	154, 222, 279, 365, 661
FaiI	YATR	6 cut(s)	152, 220, 277, 286, 363, 659
FatI	CATG	5 cut(s)	150, 218, 275, 361, 657
FauI	CCCGC	2 cut(s)	215, 350
FblI	GTMKAC	2 cut(s)	581, 831
FokI	GGATG	2 cut(s)	19, 33
FriOI	GRGCYC	2 cut(s)	92, 150
GlaI	GCGC	4 cut(s)	142, 452, 735, 874
GsaI	CCCAGC	1 cut(s)	893
GsuI	CTGGAG	1 cut(s)	782
HaeIII	GGCC	7 cut(s)	138, 318, 347, 353, 366, 677, 894
HgaI	GACGC	4 cut(s)	411, 457, 533, 842
HhaI	GCGC	4 cut(s)	143, 453, 736, 875
Hin1I	GRCGYC	1 cut(s)	834
Hin1II	CATG	5 cut(s)	154, 222, 279, 365, 661
Hin6I	GCGC	4 cut(s)	141, 451, 734, 873
HinP1I	GCGC	4 cut(s)	141, 451, 734, 873
HincII	GTYRAC	1 cut(s)	582
HindII	GTYRAC	1 cut(s)	582
HinfI	GANTC	8 cut(s)	95, 586, 593, 604, 710, 769, 777, 782
HphI	GGTGA	2 cut(s)	328, 599
Hpy166II	GTNNAC	4 cut(s)	235, 582, 631, 832
Hpy188I	TCNGA	7 cut(s)	65, 185, 343, 616, 670, 698, 841
Hpy188III	TCNNGA	9 cut(s)	151, 463, 475, 507, 513, 590, 743, 761, 817
Hpy8I	GTNNAC	4 cut(s)	235, 582, 631, 832
Hpy99I	CGWCG	7 cut(s)	476, 569, 586, 601, 862, 865, 872
HpyAV	CCTTC	3 cut(s)	307, 433, 819
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4IV	ACGT	5 cut(s)	306, 396, 627, 793, 804
HpyCH4V	TGCA	2 cut(s)	45, 76
HpyF10VI	GCNNNNNNNGC	5 cut(s)	42, 328, 363, 487, 733
HpyF3I	CTNAG	3 cut(s)	342, 602, 838
HpySE526I	ACGT	5 cut(s)	306, 396, 627, 793, 804
Hsp92I	GRCGYC	1 cut(s)	834
Hsp92II	CATG	5 cut(s)	154, 222, 279, 365, 661
HspAI	GCGC	4 cut(s)	141, 451, 734, 873
Kpn2I	TCCGGA	1 cut(s)	512
KspI	CCGCGG	1 cut(s)	351
Kzo9I	GATC	3 cut(s)	324, 333, 509
LmnI	GCTCC	3 cut(s)	763, 802, 886
Lsp1109I	GCAGC	3 cut(s)	292, 499, 607
LweI	GCATC	2 cut(s)	11, 69
MaeII	ACGT	5 cut(s)	306, 396, 627, 793, 804
MaeIII	GTNAC	3 cut(s)	201, 587, 605
MalI	GATC	3 cut(s)	326, 335, 511
MboI	GATC	3 cut(s)	324, 333, 509
MboII	GAAGA	1 cut(s)	832
MflI	RGATCY	1 cut(s)	509
MhlI	GDGCHC	3 cut(s)	92, 150, 799
MluCI	AATT	2 cut(s)	52, 842
MlyI	GAGTC	5 cut(s)	595, 602, 613, 719, 763
MmeI	TCCRAC	1 cut(s)	208
MroI	TCCGGA	1 cut(s)	512
MspA1I	CMGCKG	2 cut(s)	350, 357
MspR9I	CCNGG	3 cut(s)	145, 271, 502
MvnI	CGCG	8 cut(s)	141, 350, 422, 451, 476, 527, 734, 875
MwoI	GCNNNNNNNGC	5 cut(s)	42, 328, 363, 487, 733
NciI	CCSGG	3 cut(s)	145, 271, 502
NdeII	GATC	3 cut(s)	324, 333, 509
NlaIII	CATG	5 cut(s)	154, 222, 279, 365, 661
NlaIV	GGNNCC	3 cut(s)	172, 511, 810
NmeAIII	GCCGAG	2 cut(s)	703, 727
NmuCI	GTSAC	3 cut(s)	201, 587, 605
NruI	TCGCGA	1 cut(s)	476
NspI	RCATGY	1 cut(s)	222
NspV	TTCGAA	1 cut(s)	780
PaeI	GCATGC	1 cut(s)	222
PagI	TCATGA	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	2 cut(s)	171, 633
PfeI	GAWTC	3 cut(s)	95, 777, 782
Pfl23II	CGTACG	1 cut(s)	381
PflFI	GACNNNGTC	1 cut(s)	502
PinAI	ACCGGT	2 cut(s)	456, 576
PleI	GAGTC	5 cut(s)	594, 601, 612, 718, 763
PmaCI	CACGTG	3 cut(s)	397, 794, 805
PmlI	CACGTG	3 cut(s)	397, 794, 805
PpsI	GAGTC	5 cut(s)	594, 601, 612, 718, 763
Ppu21I	YACGTR	3 cut(s)	397, 794, 805
PshAI	GACNNNNGTC	1 cut(s)	397
PspCI	CACGTG	3 cut(s)	397, 794, 805
PspFI	CCCAGC	1 cut(s)	889
PspLI	CGTACG	1 cut(s)	381
PspN4I	GGNNCC	3 cut(s)	172, 511, 810
PspPI	GGNCC	7 cut(s)	170, 267, 316, 365, 468, 558, 892
PsrI	GAACNNNNNNTAC	2 cut(s)	227, 259
PstNI	CAGNNNCTG	1 cut(s)	69
PsuI	RGATCY	1 cut(s)	509
PsyI	GACNNNGTC	1 cut(s)	502
RruI	TCGCGA	1 cut(s)	476
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
SacII	CCGCGG	1 cut(s)	351
SalI	GTCGAC	1 cut(s)	580
Sau3AI	GATC	3 cut(s)	324, 333, 509
Sau96I	GGNCC	7 cut(s)	170, 267, 316, 365, 468, 558, 892
SchI	GAGTC	5 cut(s)	595, 602, 613, 719, 763
ScrFI	CCNGG	3 cut(s)	145, 271, 502
SduI	GDGCHC	3 cut(s)	92, 150, 799
SfaNI	GCATC	2 cut(s)	11, 69
Sfr303I	CCGCGG	1 cut(s)	351
SfuI	TTCGAA	1 cut(s)	780
SgrBI	CCGCGG	1 cut(s)	351
SinI	GGWCC	4 cut(s)	170, 267, 468, 558
SmlI	CTYRAG	2 cut(s)	99, 374
SmoI	CTYRAG	2 cut(s)	99, 374
SphI	GCATGC	1 cut(s)	222
Sse9I	AATT	2 cut(s)	52, 842
StyD4I	CCNGG	3 cut(s)	143, 269, 500
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	1 cut(s)	115
TaiI	ACGT	5 cut(s)	309, 399, 630, 796, 807
TaqI	TCGA	3 cut(s)	391, 581, 780
TaqII	GACCGA	1 cut(s)	241
TasI	AATT	2 cut(s)	52, 842
TauI	GCSGC	7 cut(s)	141, 296, 350, 353, 422, 530, 533
TfiI	GAWTC	3 cut(s)	95, 777, 782
TscAI	CASTG	3 cut(s)	52, 83, 210
TseFI	GTSAC	3 cut(s)	201, 587, 605
TseI	GCWGC	3 cut(s)	280, 487, 620
Tsp45I	GTSAC	3 cut(s)	201, 587, 605
TspDTI	ATGAA	1 cut(s)	167
TspGWI	ACGGA	1 cut(s)	460
TspRI	CASTG	3 cut(s)	52, 83, 210
Tth111I	GACNNNGTC	1 cut(s)	502
VpaK11BI	GGWCC	4 cut(s)	170, 267, 468, 558
XapI	RAATTY	1 cut(s)	842
XceI	RCATGY	1 cut(s)	222
XmiI	GTMKAC	2 cut(s)	581, 831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.