Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0014406

Physical Location & Seq

Genomic Coordinates Reverse (-)

73989516 .. 73990503

Gene Structure 988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G046700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGCGGATGAGCTGTAATGGATGCCGAATACTACGCAAGGGGTGCAGTGAGAATTGTAGCATCAGACCCTGTTTGCAGTGGATAAAGAGCCCCGAATCTCAAGCCAACGCCACCGTTTTCCTCGCCAAGTTTTACGGCCGCGCCGGGCTCATGAACCTCATCAACGCCGGACCCGAACACCTCCGACCTGCGATTTTCCGGTCACTGCTCTACGAGGCATGCGGGAGGATTGTGAACCCGATTTACGGGTCGGTCGGGTTGTTGTGGTCCGGGTCATGGCAGCTATGCCAAGCCGCCGTGGAGAACGTGCTGAAGGGCCAGCCGATCACGCCGATCACCTCTGAGGCCGCGGCCAGCGGGCATGGCCCACCTCTCAAGGCGTACGACATTCGACACGTGTCCAAGGACGAGAACTCCGCCGCGTCCAATGACCCCCAGAAGGCAAGACGCGCTACCGGTTCAAGAGTTGAAGACGCGGCGGCTCGCTTTGAAGCCAAGCCGAACTGGACCAGCGACGAGTTCAACCGGTCGACGAGTCACGAGTCGTCGCTGAGTCACCAGTCCGAGGCTGCCAACGTGGACGGCGACAGCAAGGAAACCGAGAGCATGGTTTCCTCGGAGACGGCCGAGGCTTCGCTGTTGTTCCGAGCCGAGCCGGAGTCATCGGCTCACAAGCGAACCGCGCCGGTTCAGGAAAACGAGTTAGGTCTGGAGCTGACTCTCGGATTCGAATCGTCATCACGTGCTCCCCACGTGGTTCCGGTCAAGAAGAGAAGGGTAGACGCCTCAGGATTCTGCGGTGGGTCGTCGTCGGGCGACGGCGCGTGTAAAATGGAGCTGGGCCTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

283

Amino Acids

30.43

Weight (kDa)

7.04

Isoelectric Point (pI)

55.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	4 - 102	1.4e-23	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02550
fragaria_vesca	FvH4_6g45150
malus_domestica	MD09G1088700.v1.1 MD17G1078600.v1.1
prunus_persica	Prupe.3G236200_v2.0.a1
pyrus_communis	pycom09g01450 pycom17g07790
rosa_chinensis	RchiOBHm_Chr2g0162621
rosa_laevigata	RLG00000021353
rosa_multiflora	Rmu_ssc0000364.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087820
rosa_rugosa	Rorug02G0498400
rosa_samantha	Rh2AG564500 Rh2BG577400 Rh2CG547100 Rh2DG587000
rosa_wichuraiana	Rw2G046700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	196
AccI	GTMKAC	2 cut(s)	530, 780
AccII	CGCG	7 cut(s)	141, 350, 422, 450, 476, 683, 824
AcoI	YGGCCR	3 cut(s)	136, 351, 624
AcuI	CTGAAG	1 cut(s)	332
AcvI	CACGTG	3 cut(s)	397, 743, 754
AcyI	GRCGYC	1 cut(s)	783
AfaI	GTAC	1 cut(s)	383
AfiI	CCNNNNNNNGG	4 cut(s)	245, 276, 439, 565
AflIII	ACRYGT	2 cut(s)	394, 396
AgeI	ACCGGT	2 cut(s)	455, 525
AgsI	TTSAA	4 cut(s)	462, 470, 491, 523
AluBI	AGCT	4 cut(s)	12, 283, 715, 838
AluI	AGCT	4 cut(s)	12, 283, 715, 838
Alw21I	GWGCWC	1 cut(s)	748
Alw26I	GTCTC	1 cut(s)	614
AlwNI	CAGNNNCTG	1 cut(s)	69
AoxI	GGCC	7 cut(s)	136, 316, 345, 351, 364, 624, 841
ApeKI	GCWGC	2 cut(s)	280, 569
AsiGI	ACCGGT	2 cut(s)	455, 525
AspLEI	GCGC	4 cut(s)	143, 452, 685, 824
AspS9I	GGNCC	6 cut(s)	170, 267, 316, 365, 507, 841
AsuC2I	CCSGG	2 cut(s)	145, 271
AsuHPI	GGTGA	2 cut(s)	328, 548
AsuII	TTCGAA	1 cut(s)	729
AvaII	GGWCC	3 cut(s)	170, 267, 507
AxyI	CCTNAGG	1 cut(s)	787
BanII	GRGCYC	2 cut(s)	92, 150
BauI	CACGAG	1 cut(s)	539
BbrPI	CACGTG	3 cut(s)	397, 743, 754
BbsI	GAAGAC	1 cut(s)	477
Bbv12I	GWGCWC	1 cut(s)	748
BbvI	GCAGC	2 cut(s)	292, 556
BceAI	ACGGC	5 cut(s)	151, 281, 598, 639, 835
BcnI	CCSGG	2 cut(s)	145, 271
BcoDI	GTCTC	1 cut(s)	614
BfuAI	ACCTGC	1 cut(s)	196
BisI	GCNGC	9 cut(s)	139, 281, 294, 348, 351, 420, 477, 480, 570
BlsI	GCNGC	9 cut(s)	140, 282, 295, 349, 352, 421, 478, 481, 571
Bme1390I	CCNGG	2 cut(s)	145, 271
Bme18I	GGWCC	3 cut(s)	170, 267, 507
BmgT120I	GGNCC	6 cut(s)	170, 267, 316, 365, 507, 841
BmiI	GGNNCC	2 cut(s)	172, 759
BmrFI	CCNGG	2 cut(s)	145, 271
BmsI	GCATC	2 cut(s)	11, 69
BoxI	GACNNNNGTC	1 cut(s)	397
BpiI	GAAGAC	1 cut(s)	477
BpmI	CTGGAG	1 cut(s)	731
Bpu14I	TTCGAA	1 cut(s)	729
BpuEI	CTTGAG	2 cut(s)	84, 359
BpuMI	CCSGG	2 cut(s)	145, 271
BsaAI	YACGTR	3 cut(s)	397, 743, 754
BsaBI	GATNNNNATC	1 cut(s)	730
BsaHI	GRCGYC	1 cut(s)	783
BsaJI	CCNNGG	6 cut(s)	297, 348, 402, 564, 615, 627
BsaWI	WCCGGW	4 cut(s)	198, 455, 525, 760
BsaXI	ACNNNNNCTCC	2 cut(s)	398, 428
Bsc4I	CCNNNNNNNGG	4 cut(s)	245, 276, 439, 565
Bse118I	RCCGGY	3 cut(s)	455, 525, 685
Bse1I	ACTGG	2 cut(s)	509, 559
Bse21I	CCTNAGG	1 cut(s)	787
Bse8I	GATNNNNATC	1 cut(s)	730
BseDI	CCNNGG	6 cut(s)	297, 348, 402, 564, 615, 627
BseGI	GGATG	2 cut(s)	12, 26
BseJI	GATNNNNATC	1 cut(s)	730
BseLI	CCNNNNNNNGG	4 cut(s)	245, 276, 439, 565
BseMII	CTCAG	3 cut(s)	333, 542, 801
BseNI	ACTGG	2 cut(s)	509, 559
BseX3I	CGGCCG	2 cut(s)	136, 624
BseXI	GCAGC	2 cut(s)	292, 556
BseYI	CCCAGC	1 cut(s)	838
BsgI	GTGCAG	1 cut(s)	64
Bsh1236I	CGCG	7 cut(s)	141, 350, 422, 450, 476, 683, 824
Bsh1285I	CGRYCG	4 cut(s)	139, 255, 530, 627
BshFI	GGCC	7 cut(s)	138, 318, 347, 353, 366, 626, 843
BshTI	ACCGGT	2 cut(s)	455, 525
BsiEI	CGRYCG	4 cut(s)	139, 255, 530, 627
BsiHKAI	GWGCWC	1 cut(s)	748
BsiSI	CCGG	9 cut(s)	144, 168, 199, 270, 456, 526, 656, 686, 761
BsiWI	CGTACG	1 cut(s)	381
BslI	CCNNNNNNNGG	4 cut(s)	245, 276, 439, 565
BsmAI	GTCTC	1 cut(s)	614
BsmBI	CGTCTC	1 cut(s)	614
BsnI	GGCC	7 cut(s)	138, 318, 347, 353, 366, 626, 843
Bsp119I	TTCGAA	1 cut(s)	729
Bsp1286I	GDGCHC	3 cut(s)	92, 150, 748
Bsp143I	GATC	2 cut(s)	324, 333
BspANI	GGCC	7 cut(s)	138, 318, 347, 353, 366, 626, 843
BspCNI	CTCAG	3 cut(s)	334, 543, 800
BspFNI	CGCG	7 cut(s)	141, 350, 422, 450, 476, 683, 824
BspHI	TCATGA	1 cut(s)	150
BspLI	GGNNCC	2 cut(s)	172, 759
BspMI	ACCTGC	1 cut(s)	196
BspT104I	TTCGAA	1 cut(s)	729
BsrFI	RCCGGY	3 cut(s)	455, 525, 685
BsrI	ACTGG	2 cut(s)	509, 559
BssAI	RCCGGY	3 cut(s)	455, 525, 685
BssECI	CCNNGG	6 cut(s)	297, 348, 402, 564, 615, 627
BssMI	GATC	2 cut(s)	324, 333
BssNI	GRCGYC	1 cut(s)	783
BssSI	CACGAG	1 cut(s)	539
BssT1I	CCWWGG	1 cut(s)	402
Bst2BI	CACGAG	1 cut(s)	539
Bst4CI	ACNGT	1 cut(s)	115
Bst6I	CTCTTC	1 cut(s)	764
BstACI	GRCGYC	1 cut(s)	783
BstAPI	GCANNNNNTGC	1 cut(s)	42
BstBAI	YACGTR	3 cut(s)	397, 743, 754
BstBI	TTCGAA	1 cut(s)	729
BstC8I	GCNNGC	5 cut(s)	220, 320, 355, 359, 484
BstDEI	CTNAG	3 cut(s)	342, 551, 787
BstDSI	CCRYGG	2 cut(s)	297, 348
BstF5I	GGATG	2 cut(s)	12, 26
BstFNI	CGCG	7 cut(s)	141, 350, 422, 450, 476, 683, 824
BstHHI	GCGC	4 cut(s)	143, 452, 685, 824
BstKTI	GATC	2 cut(s)	327, 336
BstMAI	GTCTC	1 cut(s)	614
BstMBI	GATC	2 cut(s)	324, 333
BstMCI	CGRYCG	4 cut(s)	139, 255, 530, 627
BstMWI	GCNNNNNNNGC	5 cut(s)	42, 328, 363, 449, 682
BstNSI	RCATGY	1 cut(s)	222
BstPAI	GACNNNNGTC	1 cut(s)	397
BstSCI	CCNGG	2 cut(s)	143, 269
BstUI	CGCG	7 cut(s)	141, 350, 422, 450, 476, 683, 824
BstV1I	GCAGC	2 cut(s)	292, 556
BstV2I	GAAGAC	1 cut(s)	477
BstZI	CGGCCG	2 cut(s)	136, 624
Bsu36I	CCTNAGG	1 cut(s)	787
BsuRI	GGCC	7 cut(s)	138, 318, 347, 353, 366, 626, 843
BtgI	CCRYGG	2 cut(s)	297, 348
BtsCI	GGATG	2 cut(s)	12, 26
BtsI	GCAGTG	3 cut(s)	52, 83, 203
BtsIMutI	CAGTG	3 cut(s)	52, 83, 203
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	5 cut(s)	220, 320, 355, 359, 484
CaiI	CAGNNNCTG	1 cut(s)	69
CciI	TCATGA	1 cut(s)	150
CfoI	GCGC	4 cut(s)	143, 452, 685, 824
Cfr10I	RCCGGY	3 cut(s)	455, 525, 685
Cfr13I	GGNCC	6 cut(s)	170, 267, 316, 365, 507, 841
Cfr42I	CCGCGG	1 cut(s)	351
CseI	GACGC	4 cut(s)	411, 456, 482, 791
Csp6I	GTAC	1 cut(s)	382
CspAI	ACCGGT	2 cut(s)	455, 525
CviAII	CATG	5 cut(s)	151, 219, 276, 362, 607
CviQI	GTAC	1 cut(s)	382
DdeI	CTNAG	3 cut(s)	342, 551, 787
DpnI	GATC	2 cut(s)	326, 335
DpnII	GATC	2 cut(s)	324, 333
EaeI	YGGCCR	3 cut(s)	136, 351, 624
EagI	CGGCCG	2 cut(s)	136, 624
Eam1104I	CTCTTC	1 cut(s)	764
EarI	CTCTTC	1 cut(s)	764
EciI	GGCGGA	1 cut(s)	406
EclXI	CGGCCG	2 cut(s)	136, 624
Eco130I	CCWWGG	1 cut(s)	402
Eco24I	GRGCYC	2 cut(s)	92, 150
Eco47I	GGWCC	3 cut(s)	170, 267, 507
Eco52I	CGGCCG	2 cut(s)	136, 624
Eco57I	CTGAAG	1 cut(s)	332
Eco72I	CACGTG	3 cut(s)	397, 743, 754
Eco81I	CCTNAGG	1 cut(s)	787
EcoT14I	CCWWGG	1 cut(s)	402
EcoT38I	GRGCYC	2 cut(s)	92, 150
ErhI	CCWWGG	1 cut(s)	402
Esp3I	CGTCTC	1 cut(s)	614
FaeI	CATG	5 cut(s)	154, 222, 279, 365, 610
FaiI	YATR	6 cut(s)	152, 220, 277, 286, 363, 608
FatI	CATG	5 cut(s)	150, 218, 275, 361, 606
FauI	CCCGC	2 cut(s)	215, 350
FblI	GTMKAC	2 cut(s)	530, 780
Fnu4HI	GCNGC	9 cut(s)	139, 281, 294, 348, 351, 420, 477, 480, 570
FokI	GGATG	2 cut(s)	19, 33
FriOI	GRGCYC	2 cut(s)	92, 150
Fsp4HI	GCNGC	9 cut(s)	139, 281, 294, 348, 351, 420, 477, 480, 570
GlaI	GCGC	4 cut(s)	142, 451, 684, 823
GluI	GCNGC	9 cut(s)	139, 281, 294, 348, 351, 420, 477, 480, 570
GsaI	CCCAGC	1 cut(s)	842
GsuI	CTGGAG	1 cut(s)	731
HaeIII	GGCC	7 cut(s)	138, 318, 347, 353, 366, 626, 843
HapII	CCGG	9 cut(s)	144, 168, 199, 270, 456, 526, 656, 686, 761
HgaI	GACGC	4 cut(s)	411, 456, 482, 791
HhaI	GCGC	4 cut(s)	143, 452, 685, 824
Hin1I	GRCGYC	1 cut(s)	783
Hin1II	CATG	5 cut(s)	154, 222, 279, 365, 610
Hin6I	GCGC	4 cut(s)	141, 450, 683, 822
HinP1I	GCGC	4 cut(s)	141, 450, 683, 822
HincII	GTYRAC	1 cut(s)	531
HindII	GTYRAC	1 cut(s)	531
HinfI	GANTC	9 cut(s)	95, 535, 542, 553, 659, 718, 726, 731, 792
HpaII	CCGG	9 cut(s)	144, 168, 199, 270, 456, 526, 656, 686, 761
HphI	GGTGA	2 cut(s)	328, 548
Hpy166II	GTNNAC	4 cut(s)	235, 531, 580, 781
Hpy188I	TCNGA	7 cut(s)	65, 185, 343, 565, 619, 647, 725
Hpy188III	TCNNGA	7 cut(s)	151, 462, 539, 692, 710, 766, 789
Hpy8I	GTNNAC	4 cut(s)	235, 531, 580, 781
Hpy99I	CGWCG	6 cut(s)	518, 535, 550, 811, 814, 821
HpyAV	CCTTC	3 cut(s)	307, 433, 768
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4IV	ACGT	5 cut(s)	306, 396, 576, 742, 753
HpyCH4V	TGCA	2 cut(s)	45, 76
HpyF10VI	GCNNNNNNNGC	5 cut(s)	42, 328, 363, 449, 682
HpyF3I	CTNAG	3 cut(s)	342, 551, 787
HpySE526I	ACGT	5 cut(s)	306, 396, 576, 742, 753
Hsp92I	GRCGYC	1 cut(s)	783
Hsp92II	CATG	5 cut(s)	154, 222, 279, 365, 610
HspAI	GCGC	4 cut(s)	141, 450, 683, 822
KspI	CCGCGG	1 cut(s)	351
Kzo9I	GATC	2 cut(s)	324, 333
LmnI	GCTCC	3 cut(s)	712, 751, 835
Lsp1109I	GCAGC	2 cut(s)	292, 556
LweI	GCATC	2 cut(s)	11, 69
MaeII	ACGT	5 cut(s)	306, 396, 576, 742, 753
MaeIII	GTNAC	3 cut(s)	201, 536, 554
MalI	GATC	2 cut(s)	326, 335
MboI	GATC	2 cut(s)	324, 333
MboII	GAAGA	2 cut(s)	482, 781
MhlI	GDGCHC	3 cut(s)	92, 150, 748
MluCI	AATT	1 cut(s)	52
MlyI	GAGTC	5 cut(s)	544, 551, 562, 668, 712
MmeI	TCCRAC	1 cut(s)	208
MspA1I	CMGCKG	2 cut(s)	350, 357
MspI	CCGG	9 cut(s)	144, 168, 199, 270, 456, 526, 656, 686, 761
MspR9I	CCNGG	2 cut(s)	145, 271
MvnI	CGCG	7 cut(s)	141, 350, 422, 450, 476, 683, 824
MwoI	GCNNNNNNNGC	5 cut(s)	42, 328, 363, 449, 682
NciI	CCSGG	2 cut(s)	145, 271
NdeII	GATC	2 cut(s)	324, 333
NlaIII	CATG	5 cut(s)	154, 222, 279, 365, 610
NlaIV	GGNNCC	2 cut(s)	172, 759
NmeAIII	GCCGAG	2 cut(s)	652, 676
NmuCI	GTSAC	3 cut(s)	201, 536, 554
NspI	RCATGY	1 cut(s)	222
NspV	TTCGAA	1 cut(s)	729
PaeI	GCATGC	1 cut(s)	222
PagI	TCATGA	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	2 cut(s)	171, 582
PfeI	GAWTC	4 cut(s)	95, 726, 731, 792
Pfl23II	CGTACG	1 cut(s)	381
PinAI	ACCGGT	2 cut(s)	455, 525
PkrI	GCNGC	9 cut(s)	140, 282, 295, 349, 352, 421, 478, 481, 571
PleI	GAGTC	5 cut(s)	543, 550, 561, 667, 712
PmaCI	CACGTG	3 cut(s)	397, 743, 754
PmlI	CACGTG	3 cut(s)	397, 743, 754
PpsI	GAGTC	5 cut(s)	543, 550, 561, 667, 712
Ppu21I	YACGTR	3 cut(s)	397, 743, 754
PshAI	GACNNNNGTC	1 cut(s)	397
PspCI	CACGTG	3 cut(s)	397, 743, 754
PspFI	CCCAGC	1 cut(s)	838
PspLI	CGTACG	1 cut(s)	381
PspN4I	GGNNCC	2 cut(s)	172, 759
PspPI	GGNCC	6 cut(s)	170, 267, 316, 365, 507, 841
PsrI	GAACNNNNNNTAC	2 cut(s)	227, 259
PstNI	CAGNNNCTG	1 cut(s)	69
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
SacII	CCGCGG	1 cut(s)	351
SalI	GTCGAC	1 cut(s)	529
SatI	GCNGC	9 cut(s)	139, 281, 294, 348, 351, 420, 477, 480, 570
Sau3AI	GATC	2 cut(s)	324, 333
Sau96I	GGNCC	6 cut(s)	170, 267, 316, 365, 507, 841
SchI	GAGTC	5 cut(s)	544, 551, 562, 668, 712
ScrFI	CCNGG	2 cut(s)	145, 271
SduI	GDGCHC	3 cut(s)	92, 150, 748
SfaNI	GCATC	2 cut(s)	11, 69
Sfr303I	CCGCGG	1 cut(s)	351
SfuI	TTCGAA	1 cut(s)	729
SgrBI	CCGCGG	1 cut(s)	351
SinI	GGWCC	3 cut(s)	170, 267, 507
SmlI	CTYRAG	2 cut(s)	99, 374
SmoI	CTYRAG	2 cut(s)	99, 374
SphI	GCATGC	1 cut(s)	222
Sse9I	AATT	1 cut(s)	52
StyD4I	CCNGG	2 cut(s)	143, 269
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	1 cut(s)	115
TaiI	ACGT	5 cut(s)	309, 399, 579, 745, 756
TaqI	TCGA	3 cut(s)	391, 530, 729
TaqII	GACCGA	1 cut(s)	241
TasI	AATT	1 cut(s)	52
TauI	GCSGC	7 cut(s)	141, 296, 350, 353, 422, 479, 482
TfiI	GAWTC	4 cut(s)	95, 726, 731, 792
TscAI	CASTG	3 cut(s)	52, 83, 210
TseFI	GTSAC	3 cut(s)	201, 536, 554
TseI	GCWGC	2 cut(s)	280, 569
Tsp45I	GTSAC	3 cut(s)	201, 536, 554
TspDTI	ATGAA	1 cut(s)	167
TspRI	CASTG	3 cut(s)	52, 83, 210
VpaK11BI	GGWCC	3 cut(s)	170, 267, 507
XceI	RCATGY	1 cut(s)	222
XmiI	GTMKAC	2 cut(s)	530, 780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.