Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0017350

Physical Location & Seq

Genomic Coordinates Forward (+)

34782030 .. 34783149

Gene Structure 1120 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g45270.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAATGCCGAGACAATCCTGCAGCAGCCAAAAGCGAGCCACGGTGATAATGATGTTGAGAAGCTGCGGAAATTTTTCGAAAAGTTCATGTTGGAGGAAGGGGTTGGTGTTGAGGATCTGAGAATTCTTTTCGAAAAACTCATGGTCGACAATGAAGGTGCGGGTGTTGACGAGTTGAGAAAAGGTTTAGAAGAATTCATGCTCAAGGAAGCAGCGGGTAAAGTTCAGGAGAAGAAGAGAGATGATGATGAGTCTGAAGAACAAGCCGAGGAGAATCAACTAAAACAAGAGAAAATAATTGGACCTAGACCGAAACGGAGGTGTGCATCAAGGCCTAATAAACTGCCGGTGCTTAATATGAGATCGAATCGGAAAATTATACCGGTACCAAAGCATTGGTGCGAGGAAGAGGAATATTTACAGGGTGAAAGTAGAATCGAGAAGCCACCTTATCAGCTTCCTTGTTACATTGCTGCAACTGGAATCGAGGAAATTAGACAGAATCAGAGAGAAGAAGATAGGAACAAGTTGGGGGCAGTATGTGGAAATTATCAGGTACTTTATGATGCGTTTTTCAAGTACCAAACTAAGCCAAAGCTCACTGCACTTGGTGATTTGTACTATGAAGGAAAAGAGGTTGATCAGGAGAGCTTGAGGGATCAGATGAAAAGCTGCGGCCTCCGAGAGACGGTTGATGTGACAAAGCATTGGGGTGATTTGGAGAAAGAGAAAGAATGTTCATATCATGACATGGTTGCAGAGCAAGAGAAGAAGAGGAAGCGCAAGATGAAGAACGCATATGATTTCATGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

272

Amino Acids

31.81

Weight (kDa)

5.57

Isoelectric Point (pI)

54.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF382	PF04037	117 - 212	6.3e-29	Domain of unknown function (DUF382)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017350)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45270 FvH4_6g45280
rosa_chinensis	RchiOBHm_Chr2g0163031
rosa_laevigata	RLG00000021366
rosa_multiflora	Rmu_sc0022169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087610
rosa_rugosa	Rorug02G0499900
rosa_samantha	Rh2AG566200 Rh2BG578500 Rh2CG548400 Rh2DG588800 Rh2DG588900
rosa_wichuraiana	Rw2G046860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	385
AccB1I	GGYRCC	1 cut(s)	385
AccI	GTMKAC	1 cut(s)	147
AciI	CCGC	4 cut(s)	67, 161, 215, 675
AclWI	GGATC	2 cut(s)	123, 666
AcsI	RAATTY	3 cut(s)	71, 123, 194
AcuI	CTGAAG	1 cut(s)	276
AdeI	CACNNNGTG	1 cut(s)	611
AfaI	GTAC	4 cut(s)	387, 558, 581, 620
AfiI	CCNNNNNNNGG	1 cut(s)	688
AgeI	ACCGGT	1 cut(s)	382
AgsI	TTSAA	1 cut(s)	577
AluBI	AGCT	5 cut(s)	64, 457, 598, 651, 672
AluI	AGCT	5 cut(s)	64, 457, 598, 651, 672
Alw26I	GTCTC	2 cut(s)	5, 680
AlwI	GGATC	2 cut(s)	123, 666
AoxI	GGCC	2 cut(s)	332, 676
ApeKI	GCWGC	6 cut(s)	22, 25, 64, 212, 473, 672
ApoI	RAATTY	3 cut(s)	71, 123, 194
AsiGI	ACCGGT	1 cut(s)	382
Asp700I	GAANNNNTTC	1 cut(s)	74
Asp718I	GGTACC	1 cut(s)	385
AspLEI	GCGC	1 cut(s)	783
AspS9I	GGNCC	1 cut(s)	302
AsuHPI	GGTGA	4 cut(s)	56, 437, 623, 725
AsuII	TTCGAA	2 cut(s)	78, 132
AvaII	GGWCC	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	385
BbvI	GCAGC	6 cut(s)	34, 37, 51, 224, 460, 659
BclI	TGATCA	1 cut(s)	640
BcoDI	GTCTC	2 cut(s)	5, 680
BfaI	CTAG	1 cut(s)	306
BfmI	CTRYAG	1 cut(s)	20
BisI	GCNGC	7 cut(s)	23, 26, 65, 213, 474, 673, 676
BlsI	GCNGC	7 cut(s)	24, 27, 66, 214, 475, 674, 677
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	1 cut(s)	387
BmsI	GCATC	2 cut(s)	335, 556
Bpu14I	TTCGAA	2 cut(s)	78, 132
BpuEI	CTTGAG	2 cut(s)	188, 673
BsaJI	CCNNGG	2 cut(s)	40, 267
BsaWI	WCCGGW	1 cut(s)	382
Bsc4I	CCNNNNNNNGG	1 cut(s)	688
Bse118I	RCCGGY	2 cut(s)	346, 382
Bse1I	ACTGG	1 cut(s)	484
Bse3DI	GCAATG	1 cut(s)	468
BseDI	CCNNGG	2 cut(s)	40, 267
BseLI	CCNNNNNNNGG	1 cut(s)	688
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	1 cut(s)	110
BseNI	ACTGG	1 cut(s)	484
BseRI	GAGGAG	1 cut(s)	284
BseXI	GCAGC	6 cut(s)	34, 37, 51, 224, 460, 659
BsgI	GTGCAG	1 cut(s)	588
BshFI	GGCC	2 cut(s)	334, 678
BshNI	GGYRCC	1 cut(s)	385
BshTI	ACCGGT	1 cut(s)	382
BsiSI	CCGG	2 cut(s)	347, 383
BslI	CCNNNNNNNGG	1 cut(s)	688
BsmAI	GTCTC	2 cut(s)	5, 680
BsmBI	CGTCTC	1 cut(s)	680
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	2 cut(s)	334, 678
Bsp119I	TTCGAA	2 cut(s)	78, 132
Bsp143I	GATC	4 cut(s)	115, 362, 640, 658
BspACI	CCGC	4 cut(s)	67, 161, 215, 675
BspANI	GGCC	2 cut(s)	334, 678
BspCNI	CTCAG	1 cut(s)	111
BspHI	TCATGA	1 cut(s)	745
BspLI	GGNNCC	1 cut(s)	387
BspMAI	CTGCAG	1 cut(s)	24
BspPI	GGATC	2 cut(s)	123, 666
BspT104I	TTCGAA	2 cut(s)	78, 132
BspT107I	GGYRCC	1 cut(s)	385
BsrDI	GCAATG	1 cut(s)	468
BsrFI	RCCGGY	2 cut(s)	346, 382
BsrI	ACTGG	1 cut(s)	484
BssAI	RCCGGY	2 cut(s)	346, 382
BssECI	CCNNGG	2 cut(s)	40, 267
BssMI	GATC	4 cut(s)	115, 362, 640, 658
Bst4CI	ACNGT	2 cut(s)	44, 691
Bst6I	CTCTTC	3 cut(s)	230, 402, 767
BstBI	TTCGAA	2 cut(s)	78, 132
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	2 cut(s)	119, 588
BstDSI	CCRYGG	1 cut(s)	40
BstHHI	GCGC	1 cut(s)	783
BstKTI	GATC	4 cut(s)	118, 365, 643, 661
BstMAI	GTCTC	2 cut(s)	5, 680
BstMBI	GATC	4 cut(s)	115, 362, 640, 658
BstSFI	CTRYAG	1 cut(s)	20
BstV1I	GCAGC	6 cut(s)	34, 37, 51, 224, 460, 659
BstX2I	RGATCY	1 cut(s)	115
BstXI	CCANNNNNNTGG	1 cut(s)	396
BstYI	RGATCY	1 cut(s)	115
BsuRI	GGCC	2 cut(s)	334, 678
BtgI	CCRYGG	1 cut(s)	40
BtsI	GCAGTG	1 cut(s)	600
BtsIMutI	CAGTG	1 cut(s)	600
Cac8I	GCNNGC	1 cut(s)	37
CciI	TCATGA	1 cut(s)	745
CfoI	GCGC	1 cut(s)	783
Cfr10I	RCCGGY	2 cut(s)	346, 382
Cfr13I	GGNCC	1 cut(s)	302
Csp6I	GTAC	4 cut(s)	386, 557, 580, 619
CspAI	ACCGGT	1 cut(s)	382
CviAII	CATG	6 cut(s)	88, 142, 199, 746, 751, 808
CviQI	GTAC	4 cut(s)	386, 557, 580, 619
DdeI	CTNAG	2 cut(s)	119, 588
DpnI	GATC	4 cut(s)	117, 364, 642, 660
DpnII	GATC	4 cut(s)	115, 362, 640, 658
DraIII	CACNNNGTG	1 cut(s)	611
Eam1104I	CTCTTC	3 cut(s)	230, 402, 767
EarI	CTCTTC	3 cut(s)	230, 402, 767
Eco147I	AGGCCT	1 cut(s)	334
Eco47I	GGWCC	1 cut(s)	302
Eco57I	CTGAAG	1 cut(s)	276
EcoRI	GAATTC	2 cut(s)	123, 194
Esp3I	CGTCTC	1 cut(s)	680
FaeI	CATG	6 cut(s)	91, 145, 202, 749, 754, 811
FatI	CATG	6 cut(s)	87, 141, 198, 745, 750, 807
FauI	CCCGC	2 cut(s)	154, 208
FauNDI	CATATG	1 cut(s)	799
FbaI	TGATCA	1 cut(s)	640
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	7 cut(s)	23, 26, 65, 213, 474, 673, 676
Fsp4HI	GCNGC	7 cut(s)	23, 26, 65, 213, 474, 673, 676
FspBI	CTAG	1 cut(s)	306
GlaI	GCGC	1 cut(s)	782
GluI	GCNGC	7 cut(s)	23, 26, 65, 213, 474, 673, 676
HaeIII	GGCC	2 cut(s)	334, 678
HapII	CCGG	2 cut(s)	347, 383
HhaI	GCGC	1 cut(s)	783
Hin1II	CATG	6 cut(s)	91, 145, 202, 749, 754, 811
Hin6I	GCGC	1 cut(s)	781
HinP1I	GCGC	1 cut(s)	781
HincII	GTYRAC	2 cut(s)	148, 169
HindII	GTYRAC	2 cut(s)	148, 169
HinfI	GANTC	6 cut(s)	251, 274, 367, 435, 483, 502
HpaII	CCGG	2 cut(s)	347, 383
HphI	GGTGA	4 cut(s)	56, 437, 623, 725
Hpy166II	GTNNAC	2 cut(s)	148, 169
Hpy188I	TCNGA	6 cut(s)	120, 256, 372, 507, 663, 683
Hpy188III	TCNNGA	4 cut(s)	227, 439, 644, 746
Hpy8I	GTNNAC	2 cut(s)	148, 169
HpyAV	CCTTC	3 cut(s)	92, 149, 620
HpyCH4III	ACNGT	2 cut(s)	44, 691
HpyCH4V	TGCA	5 cut(s)	22, 326, 476, 605, 758
HpyF3I	CTNAG	2 cut(s)	119, 588
Hsp92II	CATG	6 cut(s)	91, 145, 202, 749, 754, 811
HspAI	GCGC	1 cut(s)	781
KpnI	GGTACC	1 cut(s)	389
Ksp22I	TGATCA	1 cut(s)	640
Kzo9I	GATC	4 cut(s)	115, 362, 640, 658
LpnPI	CCDG	8 cut(s)	32, 212, 360, 396, 407, 465, 539, 629
Lsp1109I	GCAGC	6 cut(s)	34, 37, 51, 224, 460, 659
LweI	GCATC	2 cut(s)	335, 556
MaeI	CTAG	1 cut(s)	306
MaeIII	GTNAC	2 cut(s)	464, 697
MalI	GATC	4 cut(s)	117, 364, 642, 660
MboI	GATC	4 cut(s)	115, 362, 640, 658
MflI	RGATCY	1 cut(s)	115
MluCI	AATT	7 cut(s)	71, 123, 194, 297, 375, 492, 547
MlyI	GAGTC	1 cut(s)	260
MmeI	TCCRAC	1 cut(s)	72
MroXI	GAANNNNTTC	1 cut(s)	74
MseI	TTAA	1 cut(s)	354
MslI	CAYNNNNRTG	1 cut(s)	711
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	2 cut(s)	347, 383
Mva1269I	GAATGC	1 cut(s)	10
NdeI	CATATG	1 cut(s)	799
NdeII	GATC	4 cut(s)	115, 362, 640, 658
NlaIII	CATG	6 cut(s)	91, 145, 202, 749, 754, 811
NlaIV	GGNNCC	1 cut(s)	387
NmeAIII	GCCGAG	2 cut(s)	34, 292
NmuCI	GTSAC	1 cut(s)	697
NspV	TTCGAA	2 cut(s)	78, 132
PagI	TCATGA	1 cut(s)	745
PceI	AGGCCT	1 cut(s)	334
PctI	GAATGC	1 cut(s)	10
PdmI	GAANNNNTTC	1 cut(s)	74
PfeI	GAWTC	5 cut(s)	274, 367, 435, 483, 502
PinAI	ACCGGT	1 cut(s)	382
PkrI	GCNGC	7 cut(s)	24, 27, 66, 214, 475, 674, 677
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PspN4I	GGNNCC	1 cut(s)	387
PspPI	GGNCC	1 cut(s)	302
PstI	CTGCAG	1 cut(s)	24
PsuI	RGATCY	1 cut(s)	115
RsaI	GTAC	4 cut(s)	387, 558, 581, 620
RsaNI	GTAC	4 cut(s)	386, 557, 580, 619
RseI	CAYNNNNRTG	1 cut(s)	711
SalI	GTCGAC	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	7 cut(s)	23, 26, 65, 213, 474, 673, 676
Sau3AI	GATC	4 cut(s)	115, 362, 640, 658
Sau96I	GGNCC	1 cut(s)	302
SchI	GAGTC	1 cut(s)	260
SfaNI	GCATC	2 cut(s)	335, 556
SfcI	CTRYAG	1 cut(s)	20
SfuI	TTCGAA	2 cut(s)	78, 132
SinI	GGWCC	1 cut(s)	302
SmiMI	CAYNNNNRTG	1 cut(s)	711
SmlI	CTYRAG	2 cut(s)	203, 652
SmoI	CTYRAG	2 cut(s)	203, 652
Sse9I	AATT	7 cut(s)	71, 123, 194, 297, 375, 492, 547
SseBI	AGGCCT	1 cut(s)	334
SsiI	CCGC	4 cut(s)	67, 161, 215, 675
SspI	AATATT	1 cut(s)	416
SspMI	CTAG	1 cut(s)	306
StuI	AGGCCT	1 cut(s)	334
TaaI	ACNGT	2 cut(s)	44, 691
TaqI	TCGA	6 cut(s)	78, 132, 147, 365, 438, 486
TaqII	GACCGA	1 cut(s)	325
TasI	AATT	7 cut(s)	71, 123, 194, 297, 375, 492, 547
TatI	WGTACW	1 cut(s)	618
TauI	GCSGC	1 cut(s)	678
TfiI	GAWTC	5 cut(s)	274, 367, 435, 483, 502
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	1 cut(s)	607
TseFI	GTSAC	1 cut(s)	697
TseI	GCWGC	6 cut(s)	22, 25, 64, 212, 473, 672
Tsp45I	GTSAC	1 cut(s)	697
TspDTI	ATGAA	9 cut(s)	17, 76, 168, 187, 639, 680, 729, 796, 803
TspGWI	ACGGA	1 cut(s)	331
TspRI	CASTG	1 cut(s)	607
VpaK11BI	GGWCC	1 cut(s)	302
XapI	RAATTY	3 cut(s)	71, 123, 194
XmiI	GTMKAC	1 cut(s)	147
XmnI	GAANNNNTTC	1 cut(s)	74
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.