Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0017350

Physical Location & Seq

Genomic Coordinates Forward (+)

34785840 .. 34786989

Gene Structure 1150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g45280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTTGGAGGAAGGGGTTGGCGTTGAGGATTTGAGAATTCTTTTCGAAAAACTCATGGTCAACAATAATGAAGGTGTTGACGAGTTGAGAAAAGGTTTAGAAGAATTCATGCTCAAGGAGAAAAAGGAAGCAGATGATGATGAGTCTAAAGAACAAAGCAAGGAGAATCAACAAAAACAAGAGAAAACAATTTGTGCTAGATCGAAACGGAGGTGTGCGTCAAGACCTAACAAACTGCCGGTGCTTAATCTGAGACCGAATCGGAAATATATTCCGGGACTAAGGCACTACTGGTTAGTGAAAGATGAATTTTTGGAGGGTGAAAGTGGAATAGAGAAGCCACCTTATCAGCTTCCTAGTTACATTGCTGCAACTGGAATCGAGGAAATTAGACAGAATCAGAGACAAGATAATCTGAGACCGAATCGGATATATATTCCGGTACCAAGGCACTGGTTAGTGAAAGATGAATCTTTGGAGGGTGCAACTGGAATCGAGGAAACTATACAGAATCAGAGAGAAGATAATAACAAGTTGGAGGCAGTACGTGGAAATTATCAGGAACTTTATGATGCGTTTTTCAAGTACCAAACTAAGCCAAAGCTCACGGCAGTTGGTGATTTGTACTATGAAGGAAAAGAGTTTGATCAGATTCAGGTGAGCTTAAGGGATCAGAATCATCAGATGAAAAACTGTTGGGTCCGAGGGGCGGTTGAATTGACAAAGCATTATCGTGATTTGGAGAAAGAGGAAGAACGTTTATATCATGACATGGTTGCAGAGCTTGAGAAGAAGAAGAAGCGCAAGATGAAGAAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

274

Amino Acids

32.43

Weight (kDa)

6.59

Isoelectric Point (pI)

52.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF382	PF04037	83 - 137	3.8e-10	Domain of unknown function (DUF382)
DUF382	PF04037	172 - 214	1.1e-10	Domain of unknown function (DUF382)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017350)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45270 FvH4_6g45280
rosa_chinensis	RchiOBHm_Chr2g0163031
rosa_laevigata	RLG00000021366
rosa_multiflora	Rmu_sc0022169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087610
rosa_rugosa	Rorug02G0499900
rosa_samantha	Rh2AG566200 Rh2BG578500 Rh2CG548400 Rh2DG588800 Rh2DG588900
rosa_wichuraiana	Rw2G046860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	442
AccB1I	GGYRCC	1 cut(s)	442
AciI	CCGC	1 cut(s)	710
AclI	AACGTT	1 cut(s)	757
AclWI	GGATC	1 cut(s)	678
AcsI	RAATTY	3 cut(s)	36, 104, 308
AfaI	GTAC	4 cut(s)	444, 546, 587, 626
AfiI	CCNNNNNNNGG	1 cut(s)	709
AflII	CTTAAG	1 cut(s)	664
AgsI	TTSAA	2 cut(s)	583, 716
AluBI	AGCT	4 cut(s)	352, 604, 663, 784
AluI	AGCT	4 cut(s)	352, 604, 663, 784
Alw26I	GTCTC	3 cut(s)	247, 397, 412
AlwI	GGATC	1 cut(s)	678
ApeKI	GCWGC	1 cut(s)	368
ApoI	RAATTY	3 cut(s)	36, 104, 308
Asp718I	GGTACC	1 cut(s)	442
AspLEI	GCGC	1 cut(s)	804
AspS9I	GGNCC	1 cut(s)	700
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	3 cut(s)	332, 629, 670
AsuII	TTCGAA	1 cut(s)	45
AvaII	GGWCC	1 cut(s)	700
BanI	GGYRCC	1 cut(s)	442
BbvI	GCAGC	1 cut(s)	355
BceAI	ACGGC	1 cut(s)	624
BclI	TGATCA	1 cut(s)	646
BcnI	CCSGG	1 cut(s)	276
BcoDI	GTCTC	3 cut(s)	247, 397, 412
BfaI	CTAG	2 cut(s)	198, 357
BfrI	CTTAAG	1 cut(s)	664
BisI	GCNGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	370
Bme1390I	CCNGG	1 cut(s)	276
Bme18I	GGWCC	1 cut(s)	700
BmgT120I	GGNCC	1 cut(s)	700
BmiI	GGNNCC	2 cut(s)	444, 701
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	1 cut(s)	562
Bpu14I	TTCGAA	1 cut(s)	45
BpuEI	CTTGAG	2 cut(s)	98, 806
BpuMI	CCSGG	1 cut(s)	276
BsaAI	YACGTR	1 cut(s)	548
BsaBI	GATNNNNATC	1 cut(s)	675
BsaI	GGTCTC	2 cut(s)	247, 412
BsaJI	CCNNGG	2 cut(s)	446, 703
BsaWI	WCCGGW	1 cut(s)	439
Bsc4I	CCNNNNNNNGG	1 cut(s)	709
Bse118I	RCCGGY	1 cut(s)	238
Bse1I	ACTGG	4 cut(s)	296, 379, 458, 493
Bse3DI	GCAATG	1 cut(s)	363
Bse8I	GATNNNNATC	1 cut(s)	675
BseDI	CCNNGG	2 cut(s)	446, 703
BseJI	GATNNNNATC	1 cut(s)	675
BseLI	CCNNNNNNNGG	1 cut(s)	709
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	2 cut(s)	242, 407
BseNI	ACTGG	4 cut(s)	296, 379, 458, 493
BseXI	GCAGC	1 cut(s)	355
BshNI	GGYRCC	1 cut(s)	442
BsiSI	CCGG	3 cut(s)	239, 275, 440
BslFI	GGGAC	1 cut(s)	291
BslI	CCNNNNNNNGG	1 cut(s)	709
BsmAI	GTCTC	3 cut(s)	247, 397, 412
BsmFI	GGGAC	1 cut(s)	291
Bso31I	GGTCTC	2 cut(s)	247, 412
Bsp119I	TTCGAA	1 cut(s)	45
Bsp143I	GATC	3 cut(s)	200, 646, 670
BspACI	CCGC	1 cut(s)	710
BspCNI	CTCAG	2 cut(s)	243, 408
BspHI	TCATGA	1 cut(s)	766
BspLI	GGNNCC	2 cut(s)	444, 701
BspPI	GGATC	1 cut(s)	678
BspT104I	TTCGAA	1 cut(s)	45
BspT107I	GGYRCC	1 cut(s)	442
BspTI	CTTAAG	1 cut(s)	664
BspTNI	GGTCTC	2 cut(s)	247, 412
BsrDI	GCAATG	1 cut(s)	363
BsrFI	RCCGGY	1 cut(s)	238
BsrI	ACTGG	4 cut(s)	296, 379, 458, 493
BssAI	RCCGGY	1 cut(s)	238
BssECI	CCNNGG	2 cut(s)	446, 703
BssMI	GATC	3 cut(s)	200, 646, 670
BssT1I	CCWWGG	1 cut(s)	446
Bst4CI	ACNGT	1 cut(s)	695
BstAFI	CTTAAG	1 cut(s)	664
BstBAI	YACGTR	1 cut(s)	548
BstBI	TTCGAA	1 cut(s)	45
BstDEI	CTNAG	4 cut(s)	251, 281, 416, 594
BstHHI	GCGC	1 cut(s)	804
BstKTI	GATC	3 cut(s)	203, 649, 673
BstMAI	GTCTC	3 cut(s)	247, 397, 412
BstMBI	GATC	3 cut(s)	200, 646, 670
BstSCI	CCNGG	1 cut(s)	274
BstV1I	GCAGC	1 cut(s)	355
BstXI	CCANNNNNNTGG	1 cut(s)	453
BtsIMutI	CAGTG	1 cut(s)	451
CciI	TCATGA	1 cut(s)	766
CfoI	GCGC	1 cut(s)	804
Cfr10I	RCCGGY	1 cut(s)	238
Cfr13I	GGNCC	1 cut(s)	700
CseI	GACGC	1 cut(s)	207
Csp6I	GTAC	4 cut(s)	443, 545, 586, 625
CviAII	CATG	4 cut(s)	55, 109, 767, 772
CviJI	RGCY	6 cut(s)	340, 352, 598, 604, 663, 784
CviKI_1	RGCY	6 cut(s)	340, 352, 598, 604, 663, 784
CviQI	GTAC	4 cut(s)	443, 545, 586, 625
DdeI	CTNAG	4 cut(s)	251, 281, 416, 594
DpnI	GATC	3 cut(s)	202, 648, 672
DpnII	GATC	3 cut(s)	200, 646, 670
Eco130I	CCWWGG	1 cut(s)	446
Eco31I	GGTCTC	2 cut(s)	247, 412
Eco47I	GGWCC	1 cut(s)	700
EcoRI	GAATTC	2 cut(s)	36, 104
EcoT14I	CCWWGG	1 cut(s)	446
ErhI	CCWWGG	1 cut(s)	446
FaeI	CATG	4 cut(s)	58, 112, 770, 775
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	4 cut(s)	54, 108, 766, 771
FbaI	TGATCA	1 cut(s)	646
Fnu4HI	GCNGC	1 cut(s)	369
Fsp4HI	GCNGC	1 cut(s)	369
FspBI	CTAG	2 cut(s)	198, 357
GlaI	GCGC	1 cut(s)	803
GluI	GCNGC	1 cut(s)	369
HapII	CCGG	3 cut(s)	239, 275, 440
HgaI	GACGC	1 cut(s)	207
HhaI	GCGC	1 cut(s)	804
Hin1II	CATG	4 cut(s)	58, 112, 770, 775
Hin6I	GCGC	1 cut(s)	802
HinP1I	GCGC	1 cut(s)	802
HincII	GTYRAC	2 cut(s)	61, 79
HindII	GTYRAC	2 cut(s)	61, 79
HpaII	CCGG	3 cut(s)	239, 275, 440
HphI	GGTGA	3 cut(s)	332, 629, 670
Hpy166II	GTNNAC	2 cut(s)	61, 79
Hpy188III	TCNNGA	4 cut(s)	222, 560, 734, 767
Hpy8I	GTNNAC	2 cut(s)	61, 79
HpyAV	CCTTC	3 cut(s)	5, 65, 626
HpyCH4III	ACNGT	1 cut(s)	695
HpyCH4IV	ACGT	2 cut(s)	547, 757
HpyCH4V	TGCA	3 cut(s)	371, 485, 779
HpyF3I	CTNAG	4 cut(s)	251, 281, 416, 594
HpySE526I	ACGT	2 cut(s)	547, 757
Hsp92II	CATG	4 cut(s)	58, 112, 770, 775
HspAI	GCGC	1 cut(s)	802
KpnI	GGTACC	1 cut(s)	446
Ksp22I	TGATCA	1 cut(s)	646
Kzo9I	GATC	3 cut(s)	200, 646, 670
LpnPI	CCDG	9 cut(s)	252, 277, 288, 360, 439, 453, 474, 545, 641
Lsp1109I	GCAGC	1 cut(s)	355
LweI	GCATC	1 cut(s)	562
MaeI	CTAG	2 cut(s)	198, 357
MaeII	ACGT	2 cut(s)	547, 757
MaeIII	GTNAC	1 cut(s)	359
MalI	GATC	3 cut(s)	202, 648, 672
MboI	GATC	3 cut(s)	200, 646, 670
MboII	GAAGA	6 cut(s)	113, 533, 764, 802, 805, 808
MluCI	AATT	7 cut(s)	36, 104, 189, 308, 387, 553, 716
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	516
MnlI	CCTC	9 cut(s)	19, 204, 310, 376, 472, 490, 532, 698, 742
MseI	TTAA	2 cut(s)	246, 665
MslI	CAYNNNNRTG	1 cut(s)	732
MspCI	CTTAAG	1 cut(s)	664
MspI	CCGG	3 cut(s)	239, 275, 440
MspR9I	CCNGG	1 cut(s)	276
NciI	CCSGG	1 cut(s)	276
NdeII	GATC	3 cut(s)	200, 646, 670
NlaIII	CATG	4 cut(s)	58, 112, 770, 775
NlaIV	GGNNCC	2 cut(s)	444, 701
NspV	TTCGAA	1 cut(s)	45
PagI	TCATGA	1 cut(s)	766
PfoI	TCCNGGA	1 cut(s)	274
PkrI	GCNGC	1 cut(s)	370
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
Ppu21I	YACGTR	1 cut(s)	548
Psp1406I	AACGTT	1 cut(s)	757
PspN4I	GGNNCC	2 cut(s)	444, 701
PspPI	GGNCC	1 cut(s)	700
RsaI	GTAC	4 cut(s)	444, 546, 587, 626
RsaNI	GTAC	4 cut(s)	443, 545, 586, 625
RseI	CAYNNNNRTG	1 cut(s)	732
SaqAI	TTAA	2 cut(s)	246, 665
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	3 cut(s)	200, 646, 670
Sau96I	GGNCC	1 cut(s)	700
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	1 cut(s)	276
SfaNI	GCATC	1 cut(s)	562
SfuI	TTCGAA	1 cut(s)	45
SinI	GGWCC	1 cut(s)	700
SmiMI	CAYNNNNRTG	1 cut(s)	732
SmlI	CTYRAG	3 cut(s)	113, 664, 785
SmoI	CTYRAG	3 cut(s)	113, 664, 785
Sse9I	AATT	7 cut(s)	36, 104, 189, 308, 387, 553, 716
SsiI	CCGC	1 cut(s)	710
SspMI	CTAG	2 cut(s)	198, 357
StyD4I	CCNGG	1 cut(s)	274
StyI	CCWWGG	1 cut(s)	446
TaaI	ACNGT	1 cut(s)	695
TaiI	ACGT	2 cut(s)	550, 760
TaqI	TCGA	4 cut(s)	45, 203, 381, 495
TaqII	GACCGA	2 cut(s)	271, 436
TasI	AATT	7 cut(s)	36, 104, 189, 308, 387, 553, 716
TatI	WGTACW	1 cut(s)	624
Tru1I	TTAA	2 cut(s)	246, 665
Tru9I	TTAA	2 cut(s)	246, 665
TscAI	CASTG	1 cut(s)	458
TseI	GCWGC	1 cut(s)	368
TspDTI	ATGAA	6 cut(s)	84, 97, 321, 483, 645, 701
TspGWI	ACGGA	1 cut(s)	223
TspRI	CASTG	1 cut(s)	458
Vha464I	CTTAAG	1 cut(s)	664
VpaK11BI	GGWCC	1 cut(s)	700
XapI	RAATTY	3 cut(s)	36, 104, 308
XspI	CTAG	2 cut(s)	198, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.